Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0676 and pex overlap by 38 nucleotides pex and rnd are separated by 304 nucleotides rnd and tRNA-Val are separated by 38 nucleotides tRNA-Val and rbp1 are separated by 272 nucleotides rbp1 and Synpcc7942_0680 are separated by 225 nucleotides
Synpcc7942_0676: Synpcc7942_0676 - hypothetical protein, at 670,914 to 672,119
_0676
Synpcc7942_0677: pex - transcriptional regulator, PadR family, at 672,082 to 672,462
pex
Synpcc7942_0678: rnd - 3'-5' exonuclease, at 672,767 to 673,402
rnd
Synpcc7942_R0038: tRNA-Val - tRNA-Val, at 673,441 to 673,512
tRNA-Val
Synpcc7942_0679: rbp1 - RNA-binding region RNP-1, at 673,785 to 674,108
rbp1
Synpcc7942_0680: Synpcc7942_0680 - C-5 sterol desaturase, at 674,334 to 675,149
_0680
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 672.181 kb on + strand, within pex at 672.214 kb on + strand, within pex at 672.223 kb on + strand, within pex at 672.245 kb on + strand, within pex at 672.255 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.283 kb on + strand, within pex at 672.284 kb on - strand, within pex at 672.284 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.291 kb on - strand, within pex at 672.301 kb on - strand, within pex at 672.303 kb on + strand, within pex at 672.309 kb on + strand, within pex at 672.319 kb on + strand, within pex at 672.322 kb on - strand, within pex at 672.331 kb on + strand, within pex at 672.331 kb on + strand, within pex at 672.345 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.355 kb on - strand, within pex at 672.385 kb on + strand, within pex at 672.402 kb on - strand, within pex at 672.409 kb on - strand, within pex at 672.411 kb on + strand, within pex at 672.415 kb on + strand, within pex at 672.464 kb on - strand at 672.510 kb on + strand at 672.518 kb on - strand at 672.536 kb on + strand at 672.558 kb on + strand at 672.558 kb on + strand at 672.558 kb on + strand at 672.563 kb on + strand at 672.566 kb on - strand at 672.566 kb on - strand at 672.566 kb on - strand at 672.591 kb on + strand at 672.622 kb on + strand at 672.631 kb on - strand at 672.641 kb on - strand at 672.675 kb on - strand at 672.725 kb on - strand at 672.747 kb on + strand at 672.747 kb on + strand at 672.747 kb on + strand at 672.760 kb on + strand at 672.836 kb on + strand, within rnd at 672.898 kb on + strand, within rnd at 672.898 kb on + strand, within rnd at 672.911 kb on - strand, within rnd at 672.953 kb on + strand, within rnd at 672.967 kb on - strand at 672.999 kb on - strand, within rnd at 673.038 kb on + strand, within rnd at 673.046 kb on + strand, within rnd at 673.066 kb on - strand, within rnd at 673.067 kb on - strand, within rnd at 673.067 kb on - strand, within rnd at 673.117 kb on + strand, within rnd at 673.126 kb on - strand, within rnd at 673.138 kb on - strand, within rnd at 673.157 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.167 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.185 kb on - strand, within rnd at 673.202 kb on - strand, within rnd at 673.204 kb on + strand, within rnd at 673.212 kb on - strand, within rnd at 673.224 kb on + strand, within rnd at 673.224 kb on + strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.237 kb on - strand, within rnd at 673.242 kb on - strand, within rnd at 673.275 kb on - strand, within rnd at 673.303 kb on + strand, within rnd at 673.361 kb on - strand at 673.378 kb on + strand at 673.394 kb on - strand at 673.396 kb on + strand at 673.399 kb on + strand at 673.410 kb on - strand at 673.443 kb on - strand at 673.581 kb on + strand at 673.633 kb on - strand at 673.651 kb on + strand at 673.811 kb on - strand at 673.861 kb on - strand, within rbp1 at 673.862 kb on + strand, within rbp1 at 673.870 kb on - strand, within rbp1 at 673.875 kb on - strand, within rbp1 at 673.952 kb on - strand, within rbp1 at 673.975 kb on + strand, within rbp1 at 673.978 kb on - strand, within rbp1 at 674.020 kb on + strand, within rbp1 at 674.041 kb on - strand, within rbp1 at 674.116 kb on + strand at 674.124 kb on - strand at 674.125 kb on - strand at 674.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 672,181 + pex Synpcc7942_0677 0.26 -0.8 672,214 + pex Synpcc7942_0677 0.35 -2.9 672,223 + pex Synpcc7942_0677 0.37 -2.2 672,245 + pex Synpcc7942_0677 0.43 -1.2 672,255 + pex Synpcc7942_0677 0.45 -1.4 672,281 + pex Synpcc7942_0677 0.52 -1.7 672,281 + pex Synpcc7942_0677 0.52 +1.9 672,281 + pex Synpcc7942_0677 0.52 -0.6 672,281 + pex Synpcc7942_0677 0.52 -2.2 672,281 + pex Synpcc7942_0677 0.52 +0.0 672,281 + pex Synpcc7942_0677 0.52 -2.4 672,281 + pex Synpcc7942_0677 0.52 +2.9 672,281 + pex Synpcc7942_0677 0.52 -0.6 672,283 + pex Synpcc7942_0677 0.53 -0.5 672,284 - pex Synpcc7942_0677 0.53 -1.9 672,284 - pex Synpcc7942_0677 0.53 +0.4 672,289 - pex Synpcc7942_0677 0.54 -1.4 672,289 - pex Synpcc7942_0677 0.54 -2.7 672,289 - pex Synpcc7942_0677 0.54 -3.2 672,289 - pex Synpcc7942_0677 0.54 +2.2 672,289 - pex Synpcc7942_0677 0.54 -0.6 672,289 - pex Synpcc7942_0677 0.54 -0.3 672,289 - pex Synpcc7942_0677 0.54 -0.6 672,291 - pex Synpcc7942_0677 0.55 +0.5 672,301 - pex Synpcc7942_0677 0.57 +0.2 672,303 + pex Synpcc7942_0677 0.58 +0.0 672,309 + pex Synpcc7942_0677 0.60 -0.7 672,319 + pex Synpcc7942_0677 0.62 -0.6 672,322 - pex Synpcc7942_0677 0.63 +2.4 672,331 + pex Synpcc7942_0677 0.65 -0.9 672,331 + pex Synpcc7942_0677 0.65 +2.7 672,345 - pex Synpcc7942_0677 0.69 -3.0 672,350 - pex Synpcc7942_0677 0.70 -0.3 672,350 - pex Synpcc7942_0677 0.70 +2.0 672,350 - pex Synpcc7942_0677 0.70 +1.0 672,355 - pex Synpcc7942_0677 0.72 +0.0 672,385 + pex Synpcc7942_0677 0.80 -3.7 672,402 - pex Synpcc7942_0677 0.84 +0.2 672,409 - pex Synpcc7942_0677 0.86 -1.9 672,411 + pex Synpcc7942_0677 0.86 -0.6 672,415 + pex Synpcc7942_0677 0.87 -0.3 672,464 - +1.5 672,510 + -1.2 672,518 - -0.4 672,536 + +0.7 672,558 + +1.4 672,558 + -2.2 672,558 + +0.0 672,563 + +0.4 672,566 - -1.7 672,566 - -0.8 672,566 - +0.4 672,591 + -0.6 672,622 + -1.7 672,631 - +0.1 672,641 - -0.0 672,675 - +1.0 672,725 - +1.4 672,747 + -0.9 672,747 + +3.4 672,747 + -1.6 672,760 + -1.7 672,836 + rnd Synpcc7942_0678 0.11 -2.7 672,898 + rnd Synpcc7942_0678 0.21 -0.5 672,898 + rnd Synpcc7942_0678 0.21 -2.9 672,911 - rnd Synpcc7942_0678 0.23 -0.2 672,953 + rnd Synpcc7942_0678 0.29 -1.9 672,967 - +2.0 672,999 - rnd Synpcc7942_0678 0.36 -1.0 673,038 + rnd Synpcc7942_0678 0.43 -2.6 673,046 + rnd Synpcc7942_0678 0.44 +0.4 673,066 - rnd Synpcc7942_0678 0.47 -0.6 673,067 - rnd Synpcc7942_0678 0.47 -0.2 673,067 - rnd Synpcc7942_0678 0.47 -2.2 673,117 + rnd Synpcc7942_0678 0.55 -1.2 673,126 - rnd Synpcc7942_0678 0.56 -2.4 673,138 - rnd Synpcc7942_0678 0.58 -0.7 673,157 - rnd Synpcc7942_0678 0.61 -0.6 673,159 - rnd Synpcc7942_0678 0.62 -3.0 673,159 - rnd Synpcc7942_0678 0.62 -1.2 673,159 - rnd Synpcc7942_0678 0.62 -1.7 673,167 + rnd Synpcc7942_0678 0.63 -2.7 673,177 + rnd Synpcc7942_0678 0.64 -1.6 673,177 + rnd Synpcc7942_0678 0.64 -1.9 673,177 + rnd Synpcc7942_0678 0.64 +0.0 673,185 - rnd Synpcc7942_0678 0.66 -2.7 673,202 - rnd Synpcc7942_0678 0.68 -2.4 673,204 + rnd Synpcc7942_0678 0.69 -2.4 673,212 - rnd Synpcc7942_0678 0.70 -3.2 673,224 + rnd Synpcc7942_0678 0.72 -2.4 673,224 + rnd Synpcc7942_0678 0.72 -1.9 673,232 - rnd Synpcc7942_0678 0.73 -3.5 673,232 - rnd Synpcc7942_0678 0.73 -2.7 673,232 - rnd Synpcc7942_0678 0.73 -3.3 673,232 - rnd Synpcc7942_0678 0.73 -2.9 673,237 - rnd Synpcc7942_0678 0.74 -0.6 673,242 - rnd Synpcc7942_0678 0.75 -2.6 673,275 - rnd Synpcc7942_0678 0.80 -0.7 673,303 + rnd Synpcc7942_0678 0.84 -1.7 673,361 - -2.4 673,378 + -2.2 673,394 - -2.2 673,396 + +1.5 673,399 + +1.8 673,410 - -1.6 673,443 - -1.2 673,581 + +1.4 673,633 - +0.9 673,651 + -0.0 673,811 - +0.4 673,861 - rbp1 Synpcc7942_0679 0.23 -1.0 673,862 + rbp1 Synpcc7942_0679 0.24 -0.2 673,870 - rbp1 Synpcc7942_0679 0.26 -2.2 673,875 - rbp1 Synpcc7942_0679 0.28 -1.2 673,952 - rbp1 Synpcc7942_0679 0.52 -2.2 673,975 + rbp1 Synpcc7942_0679 0.59 -2.4 673,978 - rbp1 Synpcc7942_0679 0.60 -1.9 674,020 + rbp1 Synpcc7942_0679 0.73 -3.0 674,041 - rbp1 Synpcc7942_0679 0.79 -3.0 674,116 + -1.6 674,124 - +3.8 674,125 - -0.6 674,184 + -3.0
Or see this region's nucleotide sequence