Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0657 and Synpcc7942_0658 are separated by 169 nucleotides Synpcc7942_0658 and Synpcc7942_0659 are separated by 83 nucleotides Synpcc7942_0659 and tyrA are separated by 6 nucleotides tyrA and Synpcc7942_0661 are separated by 16 nucleotides
Synpcc7942_0657: Synpcc7942_0657 - hypothetical protein, at 653,047 to 653,388
_0657
Synpcc7942_0658: Synpcc7942_0658 - hypothetical protein, at 653,558 to 653,770
_0658
Synpcc7942_0659: Synpcc7942_0659 - Rad3-related DNA helicases-like, at 653,854 to 655,275
_0659
Synpcc7942_0660: tyrA - arogenate dehydrogenase, at 655,282 to 656,253
tyrA
Synpcc7942_0661: Synpcc7942_0661 - hypothetical protein, at 656,270 to 657,874
_0661
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 652.876 kb on - strand at 652.892 kb on - strand at 652.980 kb on - strand at 652.989 kb on - strand at 652.997 kb on + strand at 653.060 kb on - strand at 653.127 kb on - strand, within Synpcc7942_0657 at 653.362 kb on + strand at 653.404 kb on - strand at 653.520 kb on + strand at 653.520 kb on + strand at 653.523 kb on - strand at 653.542 kb on + strand at 653.557 kb on - strand at 653.579 kb on + strand at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand at 653.589 kb on + strand, within Synpcc7942_0658 at 653.794 kb on + strand at 653.807 kb on + strand at 653.821 kb on + strand at 653.859 kb on - strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.887 kb on - strand at 653.898 kb on + strand at 653.898 kb on + strand at 653.914 kb on + strand at 653.916 kb on - strand at 654.002 kb on - strand, within Synpcc7942_0659 at 654.043 kb on + strand, within Synpcc7942_0659 at 654.129 kb on + strand, within Synpcc7942_0659 at 654.134 kb on + strand, within Synpcc7942_0659 at 654.137 kb on - strand, within Synpcc7942_0659 at 654.147 kb on - strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.195 kb on + strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.212 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.243 kb on + strand, within Synpcc7942_0659 at 654.251 kb on - strand, within Synpcc7942_0659 at 654.315 kb on - strand, within Synpcc7942_0659 at 654.317 kb on - strand, within Synpcc7942_0659 at 654.334 kb on + strand, within Synpcc7942_0659 at 654.336 kb on + strand, within Synpcc7942_0659 at 654.356 kb on + strand, within Synpcc7942_0659 at 654.364 kb on - strand, within Synpcc7942_0659 at 654.369 kb on - strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.415 kb on + strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.478 kb on - strand, within Synpcc7942_0659 at 654.491 kb on + strand, within Synpcc7942_0659 at 654.515 kb on + strand, within Synpcc7942_0659 at 654.534 kb on - strand, within Synpcc7942_0659 at 654.547 kb on - strand, within Synpcc7942_0659 at 654.548 kb on - strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.615 kb on - strand, within Synpcc7942_0659 at 654.615 kb on - strand at 654.626 kb on + strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.639 kb on - strand, within Synpcc7942_0659 at 654.671 kb on - strand, within Synpcc7942_0659 at 654.672 kb on - strand, within Synpcc7942_0659 at 654.687 kb on + strand, within Synpcc7942_0659 at 654.754 kb on - strand, within Synpcc7942_0659 at 654.755 kb on - strand, within Synpcc7942_0659 at 654.762 kb on + strand, within Synpcc7942_0659 at 654.780 kb on + strand, within Synpcc7942_0659 at 654.785 kb on + strand, within Synpcc7942_0659 at 654.825 kb on - strand, within Synpcc7942_0659 at 654.832 kb on + strand, within Synpcc7942_0659 at 654.840 kb on - strand, within Synpcc7942_0659 at 654.844 kb on + strand, within Synpcc7942_0659 at 654.846 kb on - strand at 654.868 kb on + strand, within Synpcc7942_0659 at 654.876 kb on - strand, within Synpcc7942_0659 at 654.878 kb on + strand, within Synpcc7942_0659 at 654.886 kb on - strand, within Synpcc7942_0659 at 654.886 kb on - strand, within Synpcc7942_0659 at 654.891 kb on - strand, within Synpcc7942_0659 at 654.898 kb on - strand, within Synpcc7942_0659 at 654.997 kb on + strand, within Synpcc7942_0659 at 654.997 kb on + strand, within Synpcc7942_0659 at 655.011 kb on + strand, within Synpcc7942_0659 at 655.011 kb on + strand, within Synpcc7942_0659 at 655.011 kb on + strand, within Synpcc7942_0659 at 655.019 kb on + strand, within Synpcc7942_0659 at 655.019 kb on - strand, within Synpcc7942_0659 at 655.019 kb on - strand, within Synpcc7942_0659 at 655.070 kb on + strand, within Synpcc7942_0659 at 655.120 kb on + strand, within Synpcc7942_0659 at 655.125 kb on + strand, within Synpcc7942_0659 at 655.125 kb on + strand, within Synpcc7942_0659 at 655.125 kb on + strand, within Synpcc7942_0659 at 655.133 kb on - strand at 655.133 kb on - strand at 655.133 kb on - strand at 655.134 kb on - strand at 655.154 kb on - strand at 655.157 kb on + strand at 655.174 kb on + strand at 655.184 kb on + strand at 655.186 kb on + strand at 655.186 kb on + strand at 655.186 kb on + strand at 655.191 kb on + strand at 655.194 kb on - strand at 655.194 kb on - strand at 655.194 kb on - strand at 655.194 kb on - strand at 655.222 kb on + strand at 655.238 kb on - strand at 655.238 kb on - strand at 655.269 kb on + strand at 655.282 kb on - strand at 655.290 kb on + strand at 655.299 kb on + strand at 655.299 kb on + strand at 655.357 kb on - strand at 655.412 kb on + strand, within tyrA at 655.417 kb on - strand, within tyrA at 656.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 652,876 - -0.6 652,892 - +0.2 652,980 - +2.0 652,989 - -0.4 652,997 + -0.9 653,060 - +0.0 653,127 - Synpcc7942_0657 0.23 -0.2 653,362 + -1.9 653,404 - -1.6 653,520 + -2.7 653,520 + +0.4 653,523 - -0.2 653,542 + -0.3 653,557 - +1.4 653,579 + -1.2 653,587 - Synpcc7942_0658 0.14 +0.9 653,587 - Synpcc7942_0658 0.14 +1.4 653,587 - +0.8 653,589 + Synpcc7942_0658 0.15 -1.2 653,794 + +1.2 653,807 + +1.7 653,821 + -1.0 653,859 - +0.6 653,879 + -1.7 653,879 + -2.8 653,879 + -1.6 653,879 + -0.4 653,879 + -0.6 653,887 - -1.1 653,898 + -2.0 653,898 + +1.0 653,914 + -1.3 653,916 - -1.6 654,002 - Synpcc7942_0659 0.10 -1.4 654,043 + Synpcc7942_0659 0.13 -0.1 654,129 + Synpcc7942_0659 0.19 +0.4 654,134 + Synpcc7942_0659 0.20 -0.8 654,137 - Synpcc7942_0659 0.20 -2.6 654,147 - Synpcc7942_0659 0.21 -2.4 654,174 + Synpcc7942_0659 0.23 -1.6 654,174 + Synpcc7942_0659 0.23 -2.4 654,174 + Synpcc7942_0659 0.23 -2.4 654,182 - Synpcc7942_0659 0.23 -1.9 654,182 - Synpcc7942_0659 0.23 -3.5 654,182 - Synpcc7942_0659 0.23 -1.9 654,195 + Synpcc7942_0659 0.24 -0.8 654,203 - Synpcc7942_0659 0.25 -3.7 654,203 - Synpcc7942_0659 0.25 -1.6 654,212 + Synpcc7942_0659 0.25 -2.6 654,222 + Synpcc7942_0659 0.26 -2.4 654,222 + Synpcc7942_0659 0.26 -3.0 654,222 + Synpcc7942_0659 0.26 -3.7 654,243 + Synpcc7942_0659 0.27 +0.4 654,251 - Synpcc7942_0659 0.28 -2.2 654,315 - Synpcc7942_0659 0.32 +1.4 654,317 - Synpcc7942_0659 0.33 -2.7 654,334 + Synpcc7942_0659 0.34 -2.3 654,336 + Synpcc7942_0659 0.34 -3.0 654,356 + Synpcc7942_0659 0.35 +0.2 654,364 - Synpcc7942_0659 0.36 -2.2 654,369 - Synpcc7942_0659 0.36 -1.6 654,410 + Synpcc7942_0659 0.39 -3.0 654,410 + Synpcc7942_0659 0.39 -2.7 654,410 + Synpcc7942_0659 0.39 -1.9 654,410 + Synpcc7942_0659 0.39 -3.7 654,410 + Synpcc7942_0659 0.39 -2.9 654,410 + Synpcc7942_0659 0.39 -0.7 654,410 + Synpcc7942_0659 0.39 -1.9 654,410 + Synpcc7942_0659 0.39 -1.2 654,415 + Synpcc7942_0659 0.39 -3.3 654,418 - Synpcc7942_0659 0.40 -3.2 654,418 - +3.3 654,418 - Synpcc7942_0659 0.40 -0.6 654,418 - Synpcc7942_0659 0.40 -1.6 654,418 - Synpcc7942_0659 0.40 -1.2 654,418 - Synpcc7942_0659 0.40 -1.6 654,418 - Synpcc7942_0659 0.40 -3.6 654,478 - Synpcc7942_0659 0.44 -4.6 654,491 + Synpcc7942_0659 0.45 -2.6 654,515 + Synpcc7942_0659 0.46 -2.9 654,534 - Synpcc7942_0659 0.48 -0.2 654,547 - Synpcc7942_0659 0.49 -2.4 654,548 - Synpcc7942_0659 0.49 -2.9 654,562 + Synpcc7942_0659 0.50 -1.2 654,562 + Synpcc7942_0659 0.50 -1.9 654,615 - Synpcc7942_0659 0.54 -1.8 654,615 - -0.6 654,626 + Synpcc7942_0659 0.54 -0.3 654,634 - Synpcc7942_0659 0.55 -3.4 654,634 - Synpcc7942_0659 0.55 -2.6 654,639 - Synpcc7942_0659 0.55 -2.2 654,671 - Synpcc7942_0659 0.57 -2.2 654,672 - Synpcc7942_0659 0.58 -3.9 654,687 + Synpcc7942_0659 0.59 -1.7 654,754 - Synpcc7942_0659 0.63 -1.2 654,755 - Synpcc7942_0659 0.63 -3.2 654,762 + Synpcc7942_0659 0.64 -0.6 654,780 + Synpcc7942_0659 0.65 -1.2 654,785 + Synpcc7942_0659 0.65 -0.6 654,825 - Synpcc7942_0659 0.68 -1.9 654,832 + Synpcc7942_0659 0.69 -4.4 654,840 - Synpcc7942_0659 0.69 -1.7 654,844 + Synpcc7942_0659 0.70 -4.4 654,846 - +0.4 654,868 + Synpcc7942_0659 0.71 +0.4 654,876 - Synpcc7942_0659 0.72 -0.1 654,878 + Synpcc7942_0659 0.72 -2.5 654,886 - Synpcc7942_0659 0.73 -2.2 654,886 - Synpcc7942_0659 0.73 -3.5 654,891 - Synpcc7942_0659 0.73 -0.6 654,898 - Synpcc7942_0659 0.73 -2.3 654,997 + Synpcc7942_0659 0.80 -4.0 654,997 + Synpcc7942_0659 0.80 -1.7 655,011 + Synpcc7942_0659 0.81 -2.5 655,011 + Synpcc7942_0659 0.81 -3.8 655,011 + Synpcc7942_0659 0.81 -2.6 655,019 + Synpcc7942_0659 0.82 -2.7 655,019 - Synpcc7942_0659 0.82 -2.6 655,019 - Synpcc7942_0659 0.82 -2.4 655,070 + Synpcc7942_0659 0.86 -2.9 655,120 + Synpcc7942_0659 0.89 -3.4 655,125 + Synpcc7942_0659 0.89 -3.0 655,125 + Synpcc7942_0659 0.89 -2.6 655,125 + Synpcc7942_0659 0.89 -4.2 655,133 - -1.9 655,133 - -2.8 655,133 - -2.9 655,134 - -0.6 655,154 - -2.4 655,157 + -0.6 655,174 + -2.6 655,184 + -3.3 655,186 + -1.6 655,186 + +0.0 655,186 + -2.9 655,191 + -1.6 655,194 - -2.2 655,194 - -0.6 655,194 - -0.6 655,194 - -2.2 655,222 + +0.4 655,238 - -3.5 655,238 - -4.2 655,269 + -2.6 655,282 - -1.0 655,290 + -1.3 655,299 + -2.2 655,299 + -1.6 655,357 - -1.4 655,412 + tyrA Synpcc7942_0660 0.13 +0.3 655,417 - tyrA Synpcc7942_0660 0.14 +1.0 656,248 + +0.4
Or see this region's nucleotide sequence