Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoD1 and nat are separated by 207 nucleotides nat and priA are separated by 81 nucleotides
Synpcc7942_0649: rpoD1 - RNA polymerase sigma factor RpoD, at 642,767 to 643,966
rpoD1
Synpcc7942_0650: nat - hypothetical protein, at 644,174 to 644,659
nat
Synpcc7942_0651: priA - primosome assembly protein PriA, at 644,741 to 647,161
priA
Position (kb) 644
645 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 644.169 kb on - strand at 644.247 kb on + strand, within nat at 644.307 kb on + strand, within nat at 644.319 kb on + strand, within nat at 644.353 kb on + strand, within nat at 644.353 kb on + strand, within nat at 644.355 kb on + strand, within nat at 644.355 kb on + strand, within nat at 644.361 kb on - strand, within nat at 644.369 kb on - strand, within nat at 644.383 kb on - strand, within nat at 644.412 kb on + strand, within nat at 644.450 kb on + strand, within nat at 644.450 kb on + strand, within nat at 644.458 kb on - strand, within nat at 644.489 kb on + strand, within nat at 644.489 kb on + strand, within nat at 644.489 kb on + strand, within nat at 644.494 kb on + strand, within nat at 644.497 kb on - strand, within nat at 644.502 kb on + strand, within nat at 644.507 kb on + strand, within nat at 644.507 kb on + strand at 644.515 kb on - strand, within nat at 644.548 kb on - strand, within nat at 644.569 kb on - strand, within nat at 644.577 kb on + strand, within nat at 644.580 kb on - strand, within nat at 644.632 kb on - strand at 644.637 kb on - strand at 644.639 kb on + strand at 644.647 kb on - strand at 644.656 kb on + strand at 644.664 kb on - strand at 644.664 kb on - strand at 644.718 kb on - strand at 644.719 kb on + strand at 644.720 kb on + strand at 644.759 kb on + strand at 644.764 kb on + strand at 644.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 644,169 - -0.6 644,247 + nat Synpcc7942_0650 0.15 +3.0 644,307 + nat Synpcc7942_0650 0.27 +1.3 644,319 + nat Synpcc7942_0650 0.30 +2.7 644,353 + nat Synpcc7942_0650 0.37 +0.4 644,353 + nat Synpcc7942_0650 0.37 +1.1 644,355 + nat Synpcc7942_0650 0.37 +0.2 644,355 + nat Synpcc7942_0650 0.37 +3.2 644,361 - nat Synpcc7942_0650 0.38 +2.6 644,369 - nat Synpcc7942_0650 0.40 +1.7 644,383 - nat Synpcc7942_0650 0.43 +1.6 644,412 + nat Synpcc7942_0650 0.49 +3.1 644,450 + nat Synpcc7942_0650 0.57 +3.1 644,450 + nat Synpcc7942_0650 0.57 -1.3 644,458 - nat Synpcc7942_0650 0.58 +1.2 644,489 + nat Synpcc7942_0650 0.65 -1.6 644,489 + nat Synpcc7942_0650 0.65 +2.3 644,489 + nat Synpcc7942_0650 0.65 -0.4 644,494 + nat Synpcc7942_0650 0.66 -2.2 644,497 - nat Synpcc7942_0650 0.66 +2.2 644,502 + nat Synpcc7942_0650 0.67 +1.8 644,507 + nat Synpcc7942_0650 0.69 -1.6 644,507 + +3.6 644,515 - nat Synpcc7942_0650 0.70 +2.9 644,548 - nat Synpcc7942_0650 0.77 +0.4 644,569 - nat Synpcc7942_0650 0.81 +2.8 644,577 + nat Synpcc7942_0650 0.83 -2.6 644,580 - nat Synpcc7942_0650 0.84 -0.6 644,632 - -0.8 644,637 - +1.8 644,639 + -1.2 644,647 - -1.2 644,656 + +2.3 644,664 - +0.4 644,664 - +1.3 644,718 - -1.3 644,719 + +1.4 644,720 + -1.2 644,759 + -2.6 644,764 + +2.0 644,772 - +0.8
Or see this region's nucleotide sequence