Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sdhA and prxQ are separated by 128 nucleotides prxQ and Synpcc7942_0643 are separated by 91 nucleotides Synpcc7942_0643 and cikA are separated by 109 nucleotides
Synpcc7942_0641: sdhA - succinate dehydrogenase flavoprotein subunit, at 634,089 to 635,996
sdhA
Synpcc7942_0642: prxQ - bacterioferritin comigratory protein, at 636,125 to 636,670
prxQ
Synpcc7942_0643: Synpcc7942_0643 - hypothetical protein, at 636,762 to 636,965
_0643
Synpcc7942_0644: cikA - GAF sensor hybrid histidine kinase, at 637,075 to 639,339
cikA
Position (kb) 636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.771 kb on - strand, within sdhA at 635.808 kb on + strand at 635.865 kb on + strand at 635.865 kb on + strand at 635.870 kb on + strand at 635.872 kb on + strand at 635.873 kb on - strand at 635.878 kb on - strand at 635.878 kb on - strand at 635.880 kb on - strand at 635.909 kb on + strand at 635.919 kb on + strand at 635.920 kb on - strand at 635.940 kb on - strand at 635.946 kb on - strand at 635.953 kb on + strand at 636.005 kb on + strand at 636.013 kb on + strand at 636.023 kb on + strand at 636.097 kb on - strand at 636.103 kb on - strand at 636.106 kb on - strand at 636.122 kb on + strand at 636.122 kb on + strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.132 kb on + strand at 636.140 kb on - strand at 636.168 kb on - strand at 636.168 kb on - strand at 636.191 kb on + strand, within prxQ at 636.197 kb on - strand, within prxQ at 636.228 kb on + strand, within prxQ at 636.264 kb on + strand, within prxQ at 636.266 kb on + strand, within prxQ at 636.274 kb on - strand, within prxQ at 636.288 kb on + strand, within prxQ at 636.288 kb on + strand, within prxQ at 636.296 kb on - strand, within prxQ at 636.302 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.350 kb on + strand, within prxQ at 636.358 kb on + strand, within prxQ at 636.358 kb on + strand, within prxQ at 636.363 kb on + strand, within prxQ at 636.366 kb on - strand, within prxQ at 636.457 kb on - strand, within prxQ at 636.489 kb on + strand, within prxQ at 636.505 kb on + strand, within prxQ at 636.505 kb on + strand, within prxQ at 636.506 kb on + strand, within prxQ at 636.514 kb on - strand, within prxQ at 636.514 kb on - strand, within prxQ at 636.515 kb on + strand, within prxQ at 636.528 kb on + strand, within prxQ at 636.568 kb on - strand, within prxQ at 636.571 kb on + strand, within prxQ at 636.581 kb on + strand, within prxQ at 636.581 kb on + strand, within prxQ at 636.582 kb on + strand, within prxQ at 636.587 kb on + strand, within prxQ at 636.587 kb on + strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.646 kb on - strand at 636.652 kb on + strand at 636.673 kb on + strand at 636.673 kb on + strand at 636.691 kb on - strand at 636.691 kb on - strand at 636.692 kb on + strand at 636.709 kb on - strand at 636.710 kb on - strand at 636.717 kb on + strand at 636.722 kb on + strand at 636.722 kb on + strand at 636.722 kb on + strand at 636.730 kb on - strand at 636.730 kb on - strand at 636.730 kb on - strand at 636.730 kb on - strand at 636.766 kb on - strand at 636.787 kb on - strand, within Synpcc7942_0643 at 636.792 kb on - strand, within Synpcc7942_0643 at 636.794 kb on + strand, within Synpcc7942_0643 at 636.802 kb on - strand, within Synpcc7942_0643 at 636.802 kb on - strand, within Synpcc7942_0643 at 636.802 kb on - strand, within Synpcc7942_0643 at 636.831 kb on + strand, within Synpcc7942_0643 at 636.857 kb on + strand, within Synpcc7942_0643 at 636.857 kb on + strand, within Synpcc7942_0643 at 636.867 kb on + strand, within Synpcc7942_0643 at 636.915 kb on + strand, within Synpcc7942_0643 at 636.921 kb on - strand, within Synpcc7942_0643 at 636.944 kb on + strand, within Synpcc7942_0643 at 636.944 kb on + strand, within Synpcc7942_0643 at 636.949 kb on + strand at 636.949 kb on + strand at 636.954 kb on + strand at 636.957 kb on - strand at 636.988 kb on + strand at 637.111 kb on - strand at 637.121 kb on + strand at 637.131 kb on - strand at 637.146 kb on - strand at 637.165 kb on + strand at 637.171 kb on + strand at 637.305 kb on - strand, within cikA at 637.305 kb on - strand at 637.306 kb on - strand at 637.308 kb on + strand at 637.325 kb on - strand, within cikA at 637.338 kb on - strand, within cikA at 637.338 kb on - strand, within cikA at 637.373 kb on + strand at 637.419 kb on - strand, within cikA at 637.420 kb on - strand, within cikA at 637.431 kb on + strand, within cikA at 637.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 635,771 - sdhA Synpcc7942_0641 0.88 +0.8 635,808 + +1.4 635,865 + +1.2 635,865 + +0.8 635,870 + -1.2 635,872 + -2.2 635,873 - +0.4 635,878 - +1.3 635,878 - -0.6 635,880 - -2.4 635,909 + +1.6 635,919 + +0.4 635,920 - +2.6 635,940 - +0.5 635,946 - +0.8 635,953 + +0.9 636,005 + -1.6 636,013 + +0.6 636,023 + -1.0 636,097 - +0.7 636,103 - +2.0 636,106 - -0.6 636,122 + -0.2 636,122 + +1.0 636,130 - +2.5 636,130 - -0.6 636,130 - +3.5 636,130 - +0.8 636,130 - +2.5 636,132 + -0.3 636,140 - +0.3 636,168 - -0.6 636,168 - -0.6 636,191 + prxQ Synpcc7942_0642 0.12 +0.4 636,197 - prxQ Synpcc7942_0642 0.13 -1.6 636,228 + prxQ Synpcc7942_0642 0.19 +0.1 636,264 + prxQ Synpcc7942_0642 0.25 +1.4 636,266 + prxQ Synpcc7942_0642 0.26 +0.4 636,274 - prxQ Synpcc7942_0642 0.27 +1.6 636,288 + prxQ Synpcc7942_0642 0.30 +0.0 636,288 + prxQ Synpcc7942_0642 0.30 +1.6 636,296 - prxQ Synpcc7942_0642 0.31 -0.3 636,302 + prxQ Synpcc7942_0642 0.32 +0.8 636,309 + prxQ Synpcc7942_0642 0.34 -1.8 636,309 + prxQ Synpcc7942_0642 0.34 +0.1 636,309 + prxQ Synpcc7942_0642 0.34 +1.8 636,309 + prxQ Synpcc7942_0642 0.34 -1.4 636,309 + prxQ Synpcc7942_0642 0.34 -1.3 636,309 + prxQ Synpcc7942_0642 0.34 +0.0 636,309 + prxQ Synpcc7942_0642 0.34 +1.0 636,309 + prxQ Synpcc7942_0642 0.34 +0.0 636,309 + prxQ Synpcc7942_0642 0.34 -2.4 636,317 - prxQ Synpcc7942_0642 0.35 +0.4 636,317 - prxQ Synpcc7942_0642 0.35 +0.4 636,317 - prxQ Synpcc7942_0642 0.35 +0.3 636,317 - prxQ Synpcc7942_0642 0.35 -0.6 636,317 - prxQ Synpcc7942_0642 0.35 -2.4 636,317 - prxQ Synpcc7942_0642 0.35 +0.4 636,350 + prxQ Synpcc7942_0642 0.41 -0.3 636,358 + prxQ Synpcc7942_0642 0.43 -1.2 636,358 + prxQ Synpcc7942_0642 0.43 -0.8 636,363 + prxQ Synpcc7942_0642 0.44 +1.7 636,366 - prxQ Synpcc7942_0642 0.44 -1.3 636,457 - prxQ Synpcc7942_0642 0.61 +1.8 636,489 + prxQ Synpcc7942_0642 0.67 -0.6 636,505 + prxQ Synpcc7942_0642 0.70 -0.6 636,505 + prxQ Synpcc7942_0642 0.70 +0.1 636,506 + prxQ Synpcc7942_0642 0.70 -2.2 636,514 - prxQ Synpcc7942_0642 0.71 -2.5 636,514 - prxQ Synpcc7942_0642 0.71 -1.9 636,515 + prxQ Synpcc7942_0642 0.71 -2.0 636,528 + prxQ Synpcc7942_0642 0.74 +0.6 636,568 - prxQ Synpcc7942_0642 0.81 +0.0 636,571 + prxQ Synpcc7942_0642 0.82 -0.9 636,581 + prxQ Synpcc7942_0642 0.84 +0.7 636,581 + prxQ Synpcc7942_0642 0.84 +1.5 636,582 + prxQ Synpcc7942_0642 0.84 -2.2 636,587 + prxQ Synpcc7942_0642 0.85 -1.0 636,587 + prxQ Synpcc7942_0642 0.85 +1.1 636,589 - prxQ Synpcc7942_0642 0.85 +0.7 636,589 - prxQ Synpcc7942_0642 0.85 +0.8 636,589 - prxQ Synpcc7942_0642 0.85 +0.9 636,589 - prxQ Synpcc7942_0642 0.85 -2.4 636,646 - -1.6 636,652 + -0.6 636,673 + -1.2 636,673 + +1.8 636,691 - -3.5 636,691 - +0.7 636,692 + -1.3 636,709 - +0.0 636,710 - -2.4 636,717 + -0.3 636,722 + +1.6 636,722 + +0.4 636,722 + +1.7 636,730 - +1.1 636,730 - +0.4 636,730 - -1.0 636,730 - +0.6 636,766 - -2.4 636,787 - Synpcc7942_0643 0.12 +0.8 636,792 - Synpcc7942_0643 0.15 +0.6 636,794 + Synpcc7942_0643 0.16 +0.1 636,802 - Synpcc7942_0643 0.20 +0.4 636,802 - Synpcc7942_0643 0.20 +0.4 636,802 - Synpcc7942_0643 0.20 -3.5 636,831 + Synpcc7942_0643 0.34 -0.7 636,857 + Synpcc7942_0643 0.47 -0.6 636,857 + Synpcc7942_0643 0.47 +0.8 636,867 + Synpcc7942_0643 0.51 +0.7 636,915 + Synpcc7942_0643 0.75 -0.8 636,921 - Synpcc7942_0643 0.78 -2.4 636,944 + Synpcc7942_0643 0.89 -1.6 636,944 + Synpcc7942_0643 0.89 -2.5 636,949 + -1.6 636,949 + +3.5 636,954 + -0.6 636,957 - -0.6 636,988 + -2.4 637,111 - -1.2 637,121 + -1.9 637,131 - +0.4 637,146 - -1.9 637,165 + -3.0 637,171 + -1.6 637,305 - cikA Synpcc7942_0644 0.10 +0.2 637,305 - -1.2 637,306 - -1.2 637,308 + +0.4 637,325 - cikA Synpcc7942_0644 0.11 -2.4 637,338 - cikA Synpcc7942_0644 0.12 -2.7 637,338 - cikA Synpcc7942_0644 0.12 -1.9 637,373 + -1.9 637,419 - cikA Synpcc7942_0644 0.15 -3.4 637,420 - cikA Synpcc7942_0644 0.15 -1.9 637,431 + cikA Synpcc7942_0644 0.16 -3.7 637,619 + -1.9
Or see this region's nucleotide sequence