Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt valS and purT are separated by 81 nucleotides purT and Synpcc7942_0589 are separated by 70 nucleotides Synpcc7942_0589 and Synpcc7942_0590 are separated by 46 nucleotides
Synpcc7942_0587: valS - valyl-tRNA synthetase, at 573,854 to 576,583
valS
Synpcc7942_0588: purT - phosphoribosylglycinamide formyltransferase 2, at 576,665 to 577,840
purT
Synpcc7942_0589: Synpcc7942_0589 - Fe-S-cluster oxidoreductase-like, at 577,911 to 578,573
_0589
Synpcc7942_0590: Synpcc7942_0590 - membrane protein-like, at 578,620 to 578,967
_0590
Position (kb) 576
577
578 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 576.578 kb on + strand at 576.578 kb on + strand at 576.585 kb on - strand at 576.604 kb on + strand at 576.622 kb on - strand at 576.622 kb on - strand at 576.624 kb on - strand at 576.637 kb on - strand at 576.686 kb on - strand at 576.713 kb on - strand at 576.737 kb on - strand at 576.754 kb on - strand at 576.804 kb on + strand, within purT at 576.833 kb on - strand, within purT at 576.855 kb on + strand, within purT at 576.863 kb on - strand, within purT at 576.948 kb on - strand, within purT at 577.071 kb on - strand, within purT at 577.086 kb on - strand, within purT at 577.136 kb on - strand, within purT at 577.235 kb on - strand, within purT at 577.299 kb on + strand, within purT at 577.316 kb on + strand, within purT at 577.316 kb on + strand, within purT at 577.324 kb on - strand, within purT at 577.326 kb on + strand, within purT at 577.384 kb on - strand, within purT at 577.496 kb on - strand, within purT at 577.599 kb on + strand, within purT at 577.624 kb on - strand, within purT at 577.688 kb on + strand, within purT at 577.789 kb on + strand at 577.789 kb on + strand at 577.797 kb on - strand at 577.797 kb on - strand at 577.797 kb on - strand at 577.862 kb on - strand at 577.881 kb on + strand at 577.934 kb on + strand at 577.936 kb on + strand at 577.938 kb on + strand at 577.939 kb on + strand at 577.939 kb on + strand at 577.944 kb on + strand at 577.944 kb on + strand at 577.947 kb on - strand at 577.951 kb on + strand at 578.063 kb on - strand, within Synpcc7942_0589 at 578.090 kb on - strand, within Synpcc7942_0589 at 578.165 kb on + strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.204 kb on - strand, within Synpcc7942_0589 at 578.555 kb on + strand at 578.555 kb on + strand at 578.555 kb on + strand at 578.575 kb on + strand at 578.575 kb on + strand at 578.575 kb on - strand at 578.666 kb on - strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.693 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.763 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.795 kb on - strand, within Synpcc7942_0590 at 578.797 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 576,578 + -1.8 576,578 + -1.1 576,585 - +3.6 576,604 + -0.9 576,622 - +2.1 576,622 - +0.6 576,624 - -0.5 576,637 - +0.6 576,686 - +0.5 576,713 - -1.1 576,737 - -0.2 576,754 - -1.1 576,804 + purT Synpcc7942_0588 0.12 -0.5 576,833 - purT Synpcc7942_0588 0.14 -1.5 576,855 + purT Synpcc7942_0588 0.16 -2.8 576,863 - purT Synpcc7942_0588 0.17 -0.5 576,948 - purT Synpcc7942_0588 0.24 -0.2 577,071 - purT Synpcc7942_0588 0.35 -3.0 577,086 - purT Synpcc7942_0588 0.36 -1.1 577,136 - purT Synpcc7942_0588 0.40 -1.8 577,235 - purT Synpcc7942_0588 0.48 -1.1 577,299 + purT Synpcc7942_0588 0.54 -1.1 577,316 + purT Synpcc7942_0588 0.55 -3.1 577,316 + purT Synpcc7942_0588 0.55 +0.8 577,324 - purT Synpcc7942_0588 0.56 -0.5 577,326 + purT Synpcc7942_0588 0.56 -1.5 577,384 - purT Synpcc7942_0588 0.61 -2.3 577,496 - purT Synpcc7942_0588 0.71 -0.5 577,599 + purT Synpcc7942_0588 0.79 -0.5 577,624 - purT Synpcc7942_0588 0.82 -1.1 577,688 + purT Synpcc7942_0588 0.87 -1.1 577,789 + -4.3 577,789 + -3.4 577,797 - +0.5 577,797 - -2.1 577,797 - -2.1 577,862 - -1.1 577,881 + +0.5 577,934 + -0.7 577,936 + -0.0 577,938 + -1.5 577,939 + +3.2 577,939 + -2.3 577,944 + -2.1 577,944 + +0.5 577,947 - +0.5 577,951 + +2.1 578,063 - Synpcc7942_0589 0.23 -1.5 578,090 - Synpcc7942_0589 0.27 -0.8 578,165 + Synpcc7942_0589 0.38 -0.5 578,173 - Synpcc7942_0589 0.40 -2.1 578,173 - Synpcc7942_0589 0.40 +1.3 578,181 + Synpcc7942_0589 0.41 -1.5 578,181 + Synpcc7942_0589 0.41 +2.7 578,204 - Synpcc7942_0589 0.44 +2.3 578,555 + +1.5 578,555 + -1.0 578,555 + +0.3 578,575 + +1.9 578,575 + -2.8 578,575 - -0.6 578,666 - Synpcc7942_0590 0.13 -1.3 578,679 + Synpcc7942_0590 0.17 -2.7 578,679 + Synpcc7942_0590 0.17 +0.6 578,693 - Synpcc7942_0590 0.21 -1.8 578,759 - Synpcc7942_0590 0.40 +1.9 578,759 - Synpcc7942_0590 0.40 -0.5 578,763 + Synpcc7942_0590 0.41 -1.8 578,787 + Synpcc7942_0590 0.48 -0.8 578,787 + Synpcc7942_0590 0.48 -0.5 578,795 - Synpcc7942_0590 0.50 +2.8 578,797 + Synpcc7942_0590 0.51 +2.1 578,818 + Synpcc7942_0590 0.57 -4.6 578,818 + Synpcc7942_0590 0.57 -0.5 578,826 - Synpcc7942_0590 0.59 -2.7 578,826 - Synpcc7942_0590 0.59 -1.8
Or see this region's nucleotide sequence