Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chlI and rpiA are separated by 136 nucleotides rpiA and Synpcc7942_0585 are separated by 88 nucleotides Synpcc7942_0585 and Synpcc7942_0586 are separated by 150 nucleotides
Synpcc7942_0583: chlI - protoporphyrin IX magnesium-chelatase, at 564,123 to 565,217
chlI
Synpcc7942_0584: rpiA - ribose-5-phosphate isomerase A, at 565,354 to 566,079
rpiA
Synpcc7942_0585: Synpcc7942_0585 - PDZ/DHR/GLGF, at 566,168 to 567,388
_0585
Synpcc7942_0586: Synpcc7942_0586 - hypothetical protein, at 567,539 to 568,279
_0586
Position (kb) 566
567
568 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 565.190 kb on + strand at 565.193 kb on - strand at 565.233 kb on + strand at 565.242 kb on - strand at 565.258 kb on - strand at 565.265 kb on + strand at 565.296 kb on - strand at 565.310 kb on + strand at 565.345 kb on + strand at 565.352 kb on - strand at 566.095 kb on - strand at 566.095 kb on - strand at 566.145 kb on + strand at 566.183 kb on - strand at 566.242 kb on - strand at 566.271 kb on - strand at 566.271 kb on - strand at 566.299 kb on + strand, within Synpcc7942_0585 at 566.314 kb on - strand, within Synpcc7942_0585 at 566.321 kb on + strand, within Synpcc7942_0585 at 566.329 kb on - strand, within Synpcc7942_0585 at 566.353 kb on - strand, within Synpcc7942_0585 at 566.366 kb on + strand, within Synpcc7942_0585 at 566.389 kb on - strand, within Synpcc7942_0585 at 566.406 kb on - strand, within Synpcc7942_0585 at 566.421 kb on - strand, within Synpcc7942_0585 at 566.430 kb on + strand, within Synpcc7942_0585 at 566.463 kb on - strand, within Synpcc7942_0585 at 566.470 kb on + strand, within Synpcc7942_0585 at 566.484 kb on - strand, within Synpcc7942_0585 at 566.489 kb on + strand, within Synpcc7942_0585 at 566.489 kb on + strand, within Synpcc7942_0585 at 566.489 kb on - strand, within Synpcc7942_0585 at 566.489 kb on - strand, within Synpcc7942_0585 at 566.497 kb on - strand, within Synpcc7942_0585 at 566.497 kb on - strand, within Synpcc7942_0585 at 566.497 kb on - strand, within Synpcc7942_0585 at 566.619 kb on + strand, within Synpcc7942_0585 at 566.627 kb on - strand, within Synpcc7942_0585 at 566.671 kb on + strand, within Synpcc7942_0585 at 566.671 kb on + strand, within Synpcc7942_0585 at 566.671 kb on + strand, within Synpcc7942_0585 at 566.679 kb on - strand, within Synpcc7942_0585 at 566.679 kb on - strand, within Synpcc7942_0585 at 566.719 kb on + strand, within Synpcc7942_0585 at 566.727 kb on - strand, within Synpcc7942_0585 at 566.753 kb on + strand, within Synpcc7942_0585 at 566.753 kb on + strand, within Synpcc7942_0585 at 566.753 kb on + strand, within Synpcc7942_0585 at 566.755 kb on + strand, within Synpcc7942_0585 at 566.759 kb on - strand, within Synpcc7942_0585 at 566.801 kb on - strand, within Synpcc7942_0585 at 566.801 kb on - strand, within Synpcc7942_0585 at 566.840 kb on - strand, within Synpcc7942_0585 at 566.855 kb on - strand, within Synpcc7942_0585 at 566.870 kb on + strand, within Synpcc7942_0585 at 566.878 kb on - strand, within Synpcc7942_0585 at 566.878 kb on - strand, within Synpcc7942_0585 at 566.887 kb on + strand, within Synpcc7942_0585 at 566.887 kb on + strand, within Synpcc7942_0585 at 566.887 kb on + strand, within Synpcc7942_0585 at 566.887 kb on + strand, within Synpcc7942_0585 at 566.887 kb on + strand, within Synpcc7942_0585 at 566.973 kb on - strand, within Synpcc7942_0585 at 567.124 kb on + strand, within Synpcc7942_0585 at 567.165 kb on - strand, within Synpcc7942_0585 at 567.227 kb on - strand, within Synpcc7942_0585 at 567.231 kb on + strand, within Synpcc7942_0585 at 567.248 kb on + strand, within Synpcc7942_0585 at 567.256 kb on - strand, within Synpcc7942_0585 at 567.256 kb on - strand, within Synpcc7942_0585 at 567.291 kb on - strand at 567.367 kb on + strand at 567.375 kb on - strand at 567.383 kb on + strand at 567.393 kb on + strand at 567.401 kb on - strand at 567.420 kb on + strand at 567.428 kb on - strand at 567.435 kb on - strand at 567.445 kb on - strand at 567.457 kb on + strand at 567.471 kb on + strand at 567.477 kb on - strand at 567.479 kb on - strand at 567.486 kb on - strand at 567.498 kb on - strand at 567.504 kb on - strand at 567.517 kb on - strand at 567.519 kb on + strand at 567.527 kb on - strand at 567.527 kb on - strand at 567.533 kb on - strand at 567.574 kb on + strand at 567.612 kb on + strand at 567.615 kb on - strand at 567.634 kb on + strand, within Synpcc7942_0586 at 567.651 kb on - strand, within Synpcc7942_0586 at 567.651 kb on - strand, within Synpcc7942_0586 at 567.671 kb on + strand at 567.763 kb on + strand, within Synpcc7942_0586 at 567.772 kb on + strand, within Synpcc7942_0586 at 567.772 kb on + strand, within Synpcc7942_0586 at 567.792 kb on - strand, within Synpcc7942_0586 at 567.826 kb on - strand, within Synpcc7942_0586 at 567.859 kb on - strand, within Synpcc7942_0586 at 567.859 kb on - strand, within Synpcc7942_0586 at 567.863 kb on + strand, within Synpcc7942_0586 at 567.870 kb on + strand, within Synpcc7942_0586 at 567.878 kb on - strand, within Synpcc7942_0586 at 567.878 kb on - strand, within Synpcc7942_0586 at 567.880 kb on + strand, within Synpcc7942_0586 at 567.935 kb on + strand, within Synpcc7942_0586 at 567.962 kb on + strand, within Synpcc7942_0586 at 567.962 kb on + strand, within Synpcc7942_0586 at 567.967 kb on + strand, within Synpcc7942_0586 at 567.967 kb on + strand, within Synpcc7942_0586 at 567.970 kb on - strand, within Synpcc7942_0586 at 567.979 kb on - strand, within Synpcc7942_0586 at 567.980 kb on - strand, within Synpcc7942_0586 at 568.023 kb on + strand, within Synpcc7942_0586 at 568.023 kb on + strand, within Synpcc7942_0586 at 568.031 kb on - strand, within Synpcc7942_0586 at 568.031 kb on - strand, within Synpcc7942_0586 at 568.041 kb on - strand, within Synpcc7942_0586 at 568.057 kb on + strand, within Synpcc7942_0586 at 568.067 kb on + strand, within Synpcc7942_0586 at 568.067 kb on + strand, within Synpcc7942_0586 at 568.067 kb on + strand, within Synpcc7942_0586 at 568.075 kb on - strand, within Synpcc7942_0586 at 568.075 kb on - strand, within Synpcc7942_0586 at 568.147 kb on - strand, within Synpcc7942_0586 at 568.200 kb on - strand, within Synpcc7942_0586 at 568.219 kb on - strand at 568.282 kb on - strand at 568.303 kb on - strand at 568.303 kb on - strand at 568.303 kb on - strand at 568.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 565,190 + -1.8 565,193 - -0.2 565,233 + -0.6 565,242 - +0.8 565,258 - +3.8 565,265 + -0.0 565,296 - -2.7 565,310 + -1.5 565,345 + -1.2 565,352 - +1.8 566,095 - +0.5 566,095 - -0.1 566,145 + -2.8 566,183 - +0.5 566,242 - -2.7 566,271 - -2.5 566,271 - -2.5 566,299 + Synpcc7942_0585 0.11 -2.5 566,314 - Synpcc7942_0585 0.12 -1.1 566,321 + Synpcc7942_0585 0.13 -2.5 566,329 - Synpcc7942_0585 0.13 -2.3 566,353 - Synpcc7942_0585 0.15 -1.5 566,366 + Synpcc7942_0585 0.16 -1.5 566,389 - Synpcc7942_0585 0.18 -2.9 566,406 - Synpcc7942_0585 0.19 -1.8 566,421 - Synpcc7942_0585 0.21 -2.7 566,430 + Synpcc7942_0585 0.21 -0.5 566,463 - Synpcc7942_0585 0.24 -1.5 566,470 + Synpcc7942_0585 0.25 -1.9 566,484 - Synpcc7942_0585 0.26 -4.1 566,489 + Synpcc7942_0585 0.26 -0.4 566,489 + Synpcc7942_0585 0.26 -1.1 566,489 - Synpcc7942_0585 0.26 -1.8 566,489 - Synpcc7942_0585 0.26 -2.3 566,497 - Synpcc7942_0585 0.27 -1.1 566,497 - Synpcc7942_0585 0.27 -2.1 566,497 - Synpcc7942_0585 0.27 -2.9 566,619 + Synpcc7942_0585 0.37 -0.5 566,627 - Synpcc7942_0585 0.38 -0.5 566,671 + Synpcc7942_0585 0.41 -0.1 566,671 + Synpcc7942_0585 0.41 -3.2 566,671 + Synpcc7942_0585 0.41 -0.5 566,679 - Synpcc7942_0585 0.42 +0.7 566,679 - Synpcc7942_0585 0.42 -0.5 566,719 + Synpcc7942_0585 0.45 -2.3 566,727 - Synpcc7942_0585 0.46 -2.9 566,753 + Synpcc7942_0585 0.48 -2.7 566,753 + Synpcc7942_0585 0.48 -1.1 566,753 + Synpcc7942_0585 0.48 -2.9 566,755 + Synpcc7942_0585 0.48 -2.7 566,759 - Synpcc7942_0585 0.48 -2.3 566,801 - Synpcc7942_0585 0.52 -1.1 566,801 - Synpcc7942_0585 0.52 -0.5 566,840 - Synpcc7942_0585 0.55 -1.5 566,855 - Synpcc7942_0585 0.56 +0.9 566,870 + Synpcc7942_0585 0.57 -0.5 566,878 - Synpcc7942_0585 0.58 -1.1 566,878 - Synpcc7942_0585 0.58 -1.9 566,887 + Synpcc7942_0585 0.59 -3.4 566,887 + Synpcc7942_0585 0.59 -1.5 566,887 + Synpcc7942_0585 0.59 -3.1 566,887 + Synpcc7942_0585 0.59 -0.5 566,887 + Synpcc7942_0585 0.59 +2.3 566,973 - Synpcc7942_0585 0.66 -1.1 567,124 + Synpcc7942_0585 0.78 -1.8 567,165 - Synpcc7942_0585 0.82 -3.6 567,227 - Synpcc7942_0585 0.87 +1.3 567,231 + Synpcc7942_0585 0.87 -2.3 567,248 + Synpcc7942_0585 0.88 +0.3 567,256 - Synpcc7942_0585 0.89 -3.7 567,256 - Synpcc7942_0585 0.89 -1.5 567,291 - -1.8 567,367 + -2.1 567,375 - -1.0 567,383 + -0.9 567,393 + -1.0 567,401 - -1.8 567,420 + +2.1 567,428 - -1.8 567,435 - -3.5 567,445 - +0.5 567,457 + -0.5 567,471 + -2.7 567,477 - -1.8 567,479 - +2.3 567,486 - -0.5 567,498 - -2.3 567,504 - -1.8 567,517 - -1.5 567,519 + -1.8 567,527 - +0.7 567,527 - -1.8 567,533 - +0.4 567,574 + +1.1 567,612 + -0.1 567,615 - +0.5 567,634 + Synpcc7942_0586 0.13 +0.4 567,651 - Synpcc7942_0586 0.15 -0.5 567,651 - Synpcc7942_0586 0.15 +2.0 567,671 + +0.5 567,763 + Synpcc7942_0586 0.30 -0.5 567,772 + Synpcc7942_0586 0.31 +0.5 567,772 + Synpcc7942_0586 0.31 -2.2 567,792 - Synpcc7942_0586 0.34 +2.4 567,826 - Synpcc7942_0586 0.39 +1.9 567,859 - Synpcc7942_0586 0.43 +0.1 567,859 - Synpcc7942_0586 0.43 -0.7 567,863 + Synpcc7942_0586 0.44 +1.7 567,870 + Synpcc7942_0586 0.45 +1.7 567,878 - Synpcc7942_0586 0.46 +1.5 567,878 - Synpcc7942_0586 0.46 +1.2 567,880 + Synpcc7942_0586 0.46 -0.3 567,935 + Synpcc7942_0586 0.53 -1.5 567,962 + Synpcc7942_0586 0.57 +0.5 567,962 + Synpcc7942_0586 0.57 +1.0 567,967 + Synpcc7942_0586 0.58 -1.0 567,967 + Synpcc7942_0586 0.58 -1.1 567,970 - Synpcc7942_0586 0.58 -0.9 567,979 - Synpcc7942_0586 0.59 +0.8 567,980 - Synpcc7942_0586 0.60 +0.3 568,023 + Synpcc7942_0586 0.65 +1.5 568,023 + Synpcc7942_0586 0.65 +4.5 568,031 - Synpcc7942_0586 0.66 -0.5 568,031 - Synpcc7942_0586 0.66 +2.0 568,041 - Synpcc7942_0586 0.68 -4.4 568,057 + Synpcc7942_0586 0.70 +0.2 568,067 + Synpcc7942_0586 0.71 +0.4 568,067 + Synpcc7942_0586 0.71 +1.6 568,067 + Synpcc7942_0586 0.71 +1.5 568,075 - Synpcc7942_0586 0.72 +0.5 568,075 - Synpcc7942_0586 0.72 +1.5 568,147 - Synpcc7942_0586 0.82 +3.0 568,200 - Synpcc7942_0586 0.89 -0.5 568,219 - +1.0 568,282 - -0.3 568,303 - -1.8 568,303 - +0.4 568,303 - +1.9 568,306 + +3.3
Or see this region's nucleotide sequence