Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslO and Synpcc7942_0560 are separated by 32 nucleotides Synpcc7942_0560 and Synpcc7942_0561 are separated by 74 nucleotides Synpcc7942_0561 and Synpcc7942_0562 are separated by 91 nucleotides Synpcc7942_0562 and uvrB are separated by 57 nucleotides
Synpcc7942_0559: hslO - Hsp33-like chaperonin, at 540,349 to 541,242
hslO
Synpcc7942_0560: Synpcc7942_0560 - ATPase, at 541,275 to 541,979
_0560
Synpcc7942_0561: Synpcc7942_0561 - hypothetical protein, at 542,054 to 543,049
_0561
Synpcc7942_0562: Synpcc7942_0562 - hypothetical protein, at 543,141 to 543,596
_0562
Synpcc7942_0563: uvrB - excinuclease ABC subunit B, at 543,654 to 545,654
uvrB
Position (kb) 542
543
544 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 541.084 kb on - strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.135 kb on + strand, within hslO at 541.145 kb on + strand, within hslO at 541.153 kb on - strand at 541.153 kb on - strand at 541.171 kb on - strand at 541.207 kb on + strand at 541.225 kb on + strand at 541.228 kb on + strand at 541.233 kb on + strand at 541.234 kb on - strand at 541.238 kb on + strand at 541.238 kb on + strand at 541.258 kb on - strand at 541.290 kb on + strand at 541.295 kb on + strand at 541.324 kb on + strand at 541.332 kb on - strand at 541.341 kb on + strand at 541.948 kb on + strand at 541.948 kb on + strand at 541.948 kb on + strand at 541.994 kb on + strand at 542.002 kb on - strand at 542.002 kb on - strand at 542.015 kb on + strand at 542.099 kb on + strand at 542.107 kb on + strand at 542.110 kb on - strand at 542.115 kb on - strand at 542.171 kb on - strand, within Synpcc7942_0561 at 542.173 kb on + strand, within Synpcc7942_0561 at 542.203 kb on - strand, within Synpcc7942_0561 at 542.216 kb on - strand, within Synpcc7942_0561 at 542.216 kb on - strand, within Synpcc7942_0561 at 542.216 kb on - strand, within Synpcc7942_0561 at 542.243 kb on + strand, within Synpcc7942_0561 at 542.285 kb on + strand, within Synpcc7942_0561 at 542.304 kb on + strand, within Synpcc7942_0561 at 542.304 kb on + strand, within Synpcc7942_0561 at 542.312 kb on - strand, within Synpcc7942_0561 at 542.312 kb on - strand, within Synpcc7942_0561 at 542.333 kb on + strand, within Synpcc7942_0561 at 542.369 kb on + strand, within Synpcc7942_0561 at 542.374 kb on + strand, within Synpcc7942_0561 at 542.377 kb on - strand, within Synpcc7942_0561 at 542.390 kb on - strand, within Synpcc7942_0561 at 542.418 kb on - strand, within Synpcc7942_0561 at 542.504 kb on + strand, within Synpcc7942_0561 at 542.504 kb on + strand, within Synpcc7942_0561 at 542.504 kb on + strand, within Synpcc7942_0561 at 542.512 kb on - strand, within Synpcc7942_0561 at 542.515 kb on + strand, within Synpcc7942_0561 at 542.525 kb on + strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.549 kb on + strand, within Synpcc7942_0561 at 542.557 kb on - strand, within Synpcc7942_0561 at 542.563 kb on + strand, within Synpcc7942_0561 at 542.592 kb on + strand, within Synpcc7942_0561 at 542.623 kb on + strand, within Synpcc7942_0561 at 542.623 kb on + strand, within Synpcc7942_0561 at 542.631 kb on - strand, within Synpcc7942_0561 at 542.632 kb on - strand, within Synpcc7942_0561 at 542.708 kb on - strand, within Synpcc7942_0561 at 542.786 kb on - strand, within Synpcc7942_0561 at 542.796 kb on - strand, within Synpcc7942_0561 at 542.809 kb on - strand, within Synpcc7942_0561 at 542.816 kb on + strand, within Synpcc7942_0561 at 542.824 kb on - strand, within Synpcc7942_0561 at 542.892 kb on - strand, within Synpcc7942_0561 at 543.009 kb on + strand at 543.016 kb on + strand at 543.018 kb on + strand at 543.018 kb on + strand at 543.027 kb on + strand at 543.049 kb on - strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.064 kb on - strand at 543.064 kb on - strand at 543.071 kb on - strand at 543.071 kb on - strand at 543.131 kb on + strand at 543.194 kb on + strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.313 kb on + strand, within Synpcc7942_0562 at 543.318 kb on + strand, within Synpcc7942_0562 at 543.319 kb on - strand, within Synpcc7942_0562 at 543.323 kb on + strand, within Synpcc7942_0562 at 543.345 kb on + strand, within Synpcc7942_0562 at 543.363 kb on - strand, within Synpcc7942_0562 at 543.363 kb on - strand, within Synpcc7942_0562 at 543.375 kb on + strand, within Synpcc7942_0562 at 543.382 kb on + strand, within Synpcc7942_0562 at 543.401 kb on - strand, within Synpcc7942_0562 at 543.432 kb on - strand, within Synpcc7942_0562 at 543.442 kb on - strand, within Synpcc7942_0562 at 543.454 kb on + strand, within Synpcc7942_0562 at 543.462 kb on - strand, within Synpcc7942_0562 at 543.483 kb on - strand, within Synpcc7942_0562 at 543.505 kb on + strand, within Synpcc7942_0562 at 543.513 kb on - strand, within Synpcc7942_0562 at 543.518 kb on - strand, within Synpcc7942_0562 at 543.552 kb on + strand at 543.553 kb on - strand at 543.554 kb on - strand at 543.564 kb on + strand at 543.565 kb on + strand at 543.572 kb on - strand at 543.572 kb on - strand at 543.572 kb on - strand at 543.590 kb on + strand at 543.710 kb on - strand at 543.710 kb on - strand at 543.821 kb on + strand at 543.840 kb on - strand at 543.861 kb on - strand, within uvrB
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 541,084 - hslO Synpcc7942_0559 0.82 +0.4 541,111 + hslO Synpcc7942_0559 0.85 -4.4 541,111 + hslO Synpcc7942_0559 0.85 +1.0 541,111 + hslO Synpcc7942_0559 0.85 -4.1 541,111 + hslO Synpcc7942_0559 0.85 +2.0 541,111 + hslO Synpcc7942_0559 0.85 +0.3 541,119 - hslO Synpcc7942_0559 0.86 -0.3 541,119 - hslO Synpcc7942_0559 0.86 +1.4 541,119 - hslO Synpcc7942_0559 0.86 +0.6 541,119 - hslO Synpcc7942_0559 0.86 +2.0 541,135 + hslO Synpcc7942_0559 0.88 +0.8 541,145 + hslO Synpcc7942_0559 0.89 +0.9 541,153 - +2.1 541,153 - -0.0 541,171 - +2.4 541,207 + +3.8 541,225 + +0.6 541,228 + +0.8 541,233 + -0.3 541,234 - -0.2 541,238 + +0.9 541,238 + -3.1 541,258 - +1.7 541,290 + -0.7 541,295 + -2.0 541,324 + +0.6 541,332 - -1.4 541,341 + +1.9 541,948 + -1.7 541,948 + -2.6 541,948 + -0.3 541,994 + -2.4 542,002 - -1.0 542,002 - +0.8 542,015 + -0.4 542,099 + -1.7 542,107 + -1.7 542,110 - -2.4 542,115 - -2.4 542,171 - Synpcc7942_0561 0.12 -4.1 542,173 + Synpcc7942_0561 0.12 -1.0 542,203 - Synpcc7942_0561 0.15 -2.2 542,216 - Synpcc7942_0561 0.16 -2.4 542,216 - Synpcc7942_0561 0.16 -2.7 542,216 - Synpcc7942_0561 0.16 +0.2 542,243 + Synpcc7942_0561 0.19 -2.4 542,285 + Synpcc7942_0561 0.23 +0.9 542,304 + Synpcc7942_0561 0.25 -2.6 542,304 + Synpcc7942_0561 0.25 -3.6 542,312 - Synpcc7942_0561 0.26 -2.7 542,312 - Synpcc7942_0561 0.26 -3.8 542,333 + Synpcc7942_0561 0.28 -4.5 542,369 + Synpcc7942_0561 0.32 -3.2 542,374 + Synpcc7942_0561 0.32 -2.6 542,377 - Synpcc7942_0561 0.32 +3.4 542,390 - Synpcc7942_0561 0.34 -2.9 542,418 - Synpcc7942_0561 0.37 -2.4 542,504 + Synpcc7942_0561 0.45 -1.0 542,504 + Synpcc7942_0561 0.45 -3.2 542,504 + Synpcc7942_0561 0.45 -2.2 542,512 - Synpcc7942_0561 0.46 -4.8 542,515 + Synpcc7942_0561 0.46 -1.8 542,525 + Synpcc7942_0561 0.47 -1.0 542,533 - Synpcc7942_0561 0.48 -2.1 542,533 - Synpcc7942_0561 0.48 -1.4 542,533 - Synpcc7942_0561 0.48 -0.4 542,533 - Synpcc7942_0561 0.48 -1.4 542,549 + Synpcc7942_0561 0.50 -1.0 542,557 - Synpcc7942_0561 0.51 -1.0 542,563 + Synpcc7942_0561 0.51 -1.0 542,592 + Synpcc7942_0561 0.54 -2.2 542,623 + Synpcc7942_0561 0.57 -1.4 542,623 + Synpcc7942_0561 0.57 -3.3 542,631 - Synpcc7942_0561 0.58 -2.9 542,632 - Synpcc7942_0561 0.58 -3.6 542,708 - Synpcc7942_0561 0.66 -2.7 542,786 - Synpcc7942_0561 0.73 -1.4 542,796 - Synpcc7942_0561 0.74 -1.7 542,809 - Synpcc7942_0561 0.76 -1.7 542,816 + Synpcc7942_0561 0.77 -1.4 542,824 - Synpcc7942_0561 0.77 -0.4 542,892 - Synpcc7942_0561 0.84 -1.0 543,009 + -1.0 543,016 + -3.4 543,018 + -2.1 543,018 + -2.7 543,027 + -1.7 543,049 - -3.7 543,056 + -0.4 543,056 + +0.2 543,056 + +2.2 543,056 + +1.0 543,056 + +2.0 543,064 - -1.0 543,064 - -2.6 543,071 - -0.4 543,071 - -1.7 543,131 + +0.6 543,194 + Synpcc7942_0562 0.12 -0.2 543,202 - Synpcc7942_0562 0.13 -1.4 543,202 - Synpcc7942_0562 0.13 -1.0 543,202 - Synpcc7942_0562 0.13 -2.5 543,202 - Synpcc7942_0562 0.13 -2.0 543,313 + Synpcc7942_0562 0.38 -2.9 543,318 + Synpcc7942_0562 0.39 +0.8 543,319 - Synpcc7942_0562 0.39 -0.4 543,323 + Synpcc7942_0562 0.40 -0.0 543,345 + Synpcc7942_0562 0.45 +1.9 543,363 - Synpcc7942_0562 0.49 -1.2 543,363 - Synpcc7942_0562 0.49 +0.6 543,375 + Synpcc7942_0562 0.51 +2.6 543,382 + Synpcc7942_0562 0.53 -1.4 543,401 - Synpcc7942_0562 0.57 +2.6 543,432 - Synpcc7942_0562 0.64 -0.4 543,442 - Synpcc7942_0562 0.66 -0.4 543,454 + Synpcc7942_0562 0.69 +1.8 543,462 - Synpcc7942_0562 0.70 +0.6 543,483 - Synpcc7942_0562 0.75 -1.7 543,505 + Synpcc7942_0562 0.80 +1.6 543,513 - Synpcc7942_0562 0.82 +1.2 543,518 - Synpcc7942_0562 0.83 -1.0 543,552 + -0.2 543,553 - -0.4 543,554 - -0.4 543,564 + -1.2 543,565 + -0.7 543,572 - +0.0 543,572 - -1.4 543,572 - +0.2 543,590 + -1.0 543,710 - -1.7 543,710 - +1.6 543,821 + +0.8 543,840 - +0.6 543,861 - uvrB Synpcc7942_0563 0.10 +1.4
Or see this region's nucleotide sequence