Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nfrC and Synpcc7942_0553 overlap by 4 nucleotides Synpcc7942_0553 and ychF are separated by 59 nucleotides
Synpcc7942_0552: nfrC - UDP-N-acetylglucosamine 2-epimerase, at 534,067 to 535,185
nfrC
Synpcc7942_0553: Synpcc7942_0553 - Secretion protein HlyD, at 535,182 to 536,534
_0553
Synpcc7942_0554: ychF - translation-associated GTPase, at 536,594 to 537,685
ychF
Position (kb) 535
536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 535.203 kb on + strand at 535.234 kb on - strand at 535.236 kb on + strand at 535.244 kb on - strand at 535.384 kb on + strand, within Synpcc7942_0553 at 535.394 kb on + strand, within Synpcc7942_0553 at 535.394 kb on + strand, within Synpcc7942_0553 at 535.394 kb on - strand, within Synpcc7942_0553 at 535.396 kb on + strand, within Synpcc7942_0553 at 535.402 kb on - strand, within Synpcc7942_0553 at 535.402 kb on - strand, within Synpcc7942_0553 at 535.463 kb on - strand, within Synpcc7942_0553 at 535.485 kb on - strand, within Synpcc7942_0553 at 535.552 kb on - strand, within Synpcc7942_0553 at 535.559 kb on - strand, within Synpcc7942_0553 at 535.575 kb on - strand, within Synpcc7942_0553 at 535.578 kb on + strand, within Synpcc7942_0553 at 535.578 kb on + strand, within Synpcc7942_0553 at 535.629 kb on - strand, within Synpcc7942_0553 at 535.640 kb on + strand, within Synpcc7942_0553 at 535.648 kb on + strand, within Synpcc7942_0553 at 535.678 kb on - strand, within Synpcc7942_0553 at 535.678 kb on - strand, within Synpcc7942_0553 at 535.705 kb on - strand, within Synpcc7942_0553 at 535.730 kb on + strand, within Synpcc7942_0553 at 535.735 kb on + strand, within Synpcc7942_0553 at 535.743 kb on - strand, within Synpcc7942_0553 at 535.753 kb on - strand, within Synpcc7942_0553 at 535.758 kb on + strand, within Synpcc7942_0553 at 535.758 kb on + strand, within Synpcc7942_0553 at 535.766 kb on - strand, within Synpcc7942_0553 at 535.766 kb on - strand, within Synpcc7942_0553 at 535.812 kb on - strand, within Synpcc7942_0553 at 535.812 kb on - strand, within Synpcc7942_0553 at 535.816 kb on - strand, within Synpcc7942_0553 at 535.836 kb on + strand, within Synpcc7942_0553 at 535.837 kb on + strand, within Synpcc7942_0553 at 535.855 kb on + strand, within Synpcc7942_0553 at 535.929 kb on - strand, within Synpcc7942_0553 at 535.968 kb on + strand, within Synpcc7942_0553 at 535.968 kb on + strand, within Synpcc7942_0553 at 535.974 kb on + strand, within Synpcc7942_0553 at 535.976 kb on - strand, within Synpcc7942_0553 at 536.009 kb on - strand, within Synpcc7942_0553 at 536.070 kb on + strand, within Synpcc7942_0553 at 536.097 kb on + strand, within Synpcc7942_0553 at 536.097 kb on + strand, within Synpcc7942_0553 at 536.105 kb on - strand, within Synpcc7942_0553 at 536.119 kb on - strand, within Synpcc7942_0553 at 536.119 kb on - strand, within Synpcc7942_0553 at 536.135 kb on + strand, within Synpcc7942_0553 at 536.135 kb on + strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.145 kb on - strand, within Synpcc7942_0553 at 536.156 kb on - strand, within Synpcc7942_0553 at 536.175 kb on + strand, within Synpcc7942_0553 at 536.189 kb on - strand, within Synpcc7942_0553 at 536.198 kb on + strand, within Synpcc7942_0553 at 536.206 kb on - strand, within Synpcc7942_0553 at 536.226 kb on - strand, within Synpcc7942_0553 at 536.229 kb on + strand, within Synpcc7942_0553 at 536.262 kb on + strand, within Synpcc7942_0553 at 536.270 kb on - strand, within Synpcc7942_0553 at 536.270 kb on - strand, within Synpcc7942_0553 at 536.294 kb on - strand, within Synpcc7942_0553 at 536.318 kb on - strand, within Synpcc7942_0553 at 536.320 kb on + strand, within Synpcc7942_0553 at 536.328 kb on - strand, within Synpcc7942_0553 at 536.374 kb on + strand, within Synpcc7942_0553 at 536.377 kb on - strand, within Synpcc7942_0553 at 536.377 kb on - strand, within Synpcc7942_0553 at 536.380 kb on - strand, within Synpcc7942_0553 at 536.382 kb on - strand, within Synpcc7942_0553 at 536.382 kb on - strand, within Synpcc7942_0553 at 536.399 kb on - strand at 536.416 kb on + strand at 536.429 kb on + strand at 536.447 kb on - strand at 536.495 kb on + strand at 536.557 kb on + strand at 536.580 kb on + strand at 536.580 kb on + strand at 536.591 kb on - strand at 536.596 kb on + strand at 536.596 kb on + strand at 536.607 kb on + strand at 536.617 kb on - strand at 536.620 kb on + strand at 536.623 kb on - strand at 536.629 kb on + strand at 536.634 kb on + strand at 536.680 kb on - strand at 536.695 kb on + strand at 536.710 kb on - strand at 536.764 kb on + strand, within ychF at 536.774 kb on + strand, within ychF at 536.781 kb on + strand, within ychF at 536.782 kb on - strand, within ychF at 536.783 kb on + strand, within ychF at 536.783 kb on + strand, within ychF at 536.816 kb on + strand, within ychF at 536.818 kb on - strand, within ychF at 536.821 kb on + strand, within ychF at 536.840 kb on + strand, within ychF at 536.841 kb on + strand, within ychF at 536.843 kb on - strand, within ychF at 536.846 kb on + strand, within ychF at 536.859 kb on - strand, within ychF at 536.900 kb on + strand, within ychF at 536.910 kb on + strand, within ychF at 536.924 kb on + strand, within ychF at 536.999 kb on + strand, within ychF at 537.047 kb on - strand, within ychF at 537.080 kb on + strand, within ychF at 537.109 kb on - strand, within ychF at 537.118 kb on - strand, within ychF at 537.167 kb on + strand, within ychF at 537.175 kb on - strand, within ychF at 537.175 kb on - strand, within ychF at 537.191 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.241 kb on + strand at 537.265 kb on - strand, within ychF at 537.293 kb on + strand, within ychF at 537.295 kb on + strand, within ychF at 537.297 kb on - strand, within ychF at 537.297 kb on - strand, within ychF at 537.299 kb on - strand, within ychF at 537.334 kb on + strand, within ychF at 537.334 kb on + strand, within ychF at 537.387 kb on - strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.451 kb on + strand, within ychF at 537.466 kb on + strand, within ychF at 537.474 kb on - strand, within ychF at 537.492 kb on + strand, within ychF at 537.494 kb on + strand, within ychF at 537.494 kb on + strand, within ychF at 537.502 kb on + strand at 537.510 kb on + strand, within ychF at 537.517 kb on - strand, within ychF
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 535,203 + -1.0 535,234 - -2.2 535,236 + -3.9 535,244 - -2.2 535,384 + Synpcc7942_0553 0.15 +0.2 535,394 + Synpcc7942_0553 0.16 -2.3 535,394 + Synpcc7942_0553 0.16 -2.0 535,394 - Synpcc7942_0553 0.16 -1.4 535,396 + Synpcc7942_0553 0.16 -1.7 535,402 - Synpcc7942_0553 0.16 -1.4 535,402 - Synpcc7942_0553 0.16 -2.6 535,463 - Synpcc7942_0553 0.21 -2.2 535,485 - Synpcc7942_0553 0.22 -0.4 535,552 - Synpcc7942_0553 0.27 -2.4 535,559 - Synpcc7942_0553 0.28 -2.5 535,575 - Synpcc7942_0553 0.29 -1.4 535,578 + Synpcc7942_0553 0.29 -0.4 535,578 + Synpcc7942_0553 0.29 -1.7 535,629 - Synpcc7942_0553 0.33 -2.0 535,640 + Synpcc7942_0553 0.34 -1.0 535,648 + Synpcc7942_0553 0.34 -1.0 535,678 - Synpcc7942_0553 0.37 +0.6 535,678 - Synpcc7942_0553 0.37 -0.4 535,705 - Synpcc7942_0553 0.39 -1.0 535,730 + Synpcc7942_0553 0.41 -1.7 535,735 + Synpcc7942_0553 0.41 -3.7 535,743 - Synpcc7942_0553 0.41 -1.0 535,753 - Synpcc7942_0553 0.42 -0.4 535,758 + Synpcc7942_0553 0.43 -2.2 535,758 + Synpcc7942_0553 0.43 -3.5 535,766 - Synpcc7942_0553 0.43 -2.0 535,766 - Synpcc7942_0553 0.43 -1.0 535,812 - Synpcc7942_0553 0.47 -2.0 535,812 - Synpcc7942_0553 0.47 -1.4 535,816 - Synpcc7942_0553 0.47 -1.4 535,836 + Synpcc7942_0553 0.48 -2.0 535,837 + Synpcc7942_0553 0.48 -1.0 535,855 + Synpcc7942_0553 0.50 -1.4 535,929 - Synpcc7942_0553 0.55 +0.8 535,968 + Synpcc7942_0553 0.58 -0.4 535,968 + Synpcc7942_0553 0.58 -2.2 535,974 + Synpcc7942_0553 0.59 -0.9 535,976 - Synpcc7942_0553 0.59 -1.7 536,009 - Synpcc7942_0553 0.61 -3.7 536,070 + Synpcc7942_0553 0.66 -1.4 536,097 + Synpcc7942_0553 0.68 -3.9 536,097 + Synpcc7942_0553 0.68 -4.5 536,105 - Synpcc7942_0553 0.68 -2.6 536,119 - Synpcc7942_0553 0.69 +0.0 536,119 - Synpcc7942_0553 0.69 -1.4 536,135 + Synpcc7942_0553 0.70 -1.4 536,135 + Synpcc7942_0553 0.70 -2.7 536,144 - Synpcc7942_0553 0.71 -1.7 536,144 - Synpcc7942_0553 0.71 -1.4 536,144 - Synpcc7942_0553 0.71 -1.7 536,145 - Synpcc7942_0553 0.71 -2.4 536,156 - Synpcc7942_0553 0.72 +0.6 536,175 + Synpcc7942_0553 0.73 -2.0 536,189 - Synpcc7942_0553 0.74 -3.1 536,198 + Synpcc7942_0553 0.75 -3.0 536,206 - Synpcc7942_0553 0.76 -2.4 536,226 - Synpcc7942_0553 0.77 -2.0 536,229 + Synpcc7942_0553 0.77 -0.4 536,262 + Synpcc7942_0553 0.80 -2.6 536,270 - Synpcc7942_0553 0.80 -1.7 536,270 - Synpcc7942_0553 0.80 -4.2 536,294 - Synpcc7942_0553 0.82 -1.0 536,318 - Synpcc7942_0553 0.84 -1.7 536,320 + Synpcc7942_0553 0.84 -4.4 536,328 - Synpcc7942_0553 0.85 -1.7 536,374 + Synpcc7942_0553 0.88 -2.2 536,377 - Synpcc7942_0553 0.88 -2.4 536,377 - Synpcc7942_0553 0.88 -3.6 536,380 - Synpcc7942_0553 0.89 -1.7 536,382 - Synpcc7942_0553 0.89 -1.7 536,382 - Synpcc7942_0553 0.89 -4.2 536,399 - -1.7 536,416 + -1.4 536,429 + -1.4 536,447 - -2.9 536,495 + -3.9 536,557 + +0.0 536,580 + +1.3 536,580 + +1.4 536,591 - +1.4 536,596 + -0.1 536,596 + +0.6 536,607 + +1.0 536,617 - -1.0 536,620 + +0.5 536,623 - +1.8 536,629 + -1.1 536,634 + +1.2 536,680 - +0.0 536,695 + -0.1 536,710 - -0.4 536,764 + ychF Synpcc7942_0554 0.16 +2.0 536,774 + ychF Synpcc7942_0554 0.16 +1.3 536,781 + ychF Synpcc7942_0554 0.17 -0.1 536,782 - ychF Synpcc7942_0554 0.17 +1.0 536,783 + ychF Synpcc7942_0554 0.17 -0.4 536,783 + ychF Synpcc7942_0554 0.17 +0.6 536,816 + ychF Synpcc7942_0554 0.20 -0.4 536,818 - ychF Synpcc7942_0554 0.21 -1.8 536,821 + ychF Synpcc7942_0554 0.21 -1.0 536,840 + ychF Synpcc7942_0554 0.23 +0.1 536,841 + ychF Synpcc7942_0554 0.23 -0.4 536,843 - ychF Synpcc7942_0554 0.23 -0.6 536,846 + ychF Synpcc7942_0554 0.23 -0.4 536,859 - ychF Synpcc7942_0554 0.24 -1.7 536,900 + ychF Synpcc7942_0554 0.28 -0.4 536,910 + ychF Synpcc7942_0554 0.29 -0.2 536,924 + ychF Synpcc7942_0554 0.30 -0.4 536,999 + ychF Synpcc7942_0554 0.37 -1.1 537,047 - ychF Synpcc7942_0554 0.41 -2.6 537,080 + ychF Synpcc7942_0554 0.45 +0.0 537,109 - ychF Synpcc7942_0554 0.47 +0.6 537,118 - ychF Synpcc7942_0554 0.48 -1.7 537,167 + ychF Synpcc7942_0554 0.52 -1.4 537,175 - ychF Synpcc7942_0554 0.53 -1.7 537,175 - ychF Synpcc7942_0554 0.53 +0.0 537,191 + ychF Synpcc7942_0554 0.55 -0.4 537,196 + ychF Synpcc7942_0554 0.55 -0.4 537,196 + ychF Synpcc7942_0554 0.55 -0.4 537,196 + ychF Synpcc7942_0554 0.55 -1.1 537,241 + +3.2 537,265 - ychF Synpcc7942_0554 0.61 -1.7 537,293 + ychF Synpcc7942_0554 0.64 +0.3 537,295 + ychF Synpcc7942_0554 0.64 -0.4 537,297 - ychF Synpcc7942_0554 0.64 -1.0 537,297 - ychF Synpcc7942_0554 0.64 -0.4 537,299 - ychF Synpcc7942_0554 0.65 -0.6 537,334 + ychF Synpcc7942_0554 0.68 +0.0 537,334 + ychF Synpcc7942_0554 0.68 -1.4 537,387 - ychF Synpcc7942_0554 0.73 +1.3 537,411 + ychF Synpcc7942_0554 0.75 +0.6 537,411 + ychF Synpcc7942_0554 0.75 -2.8 537,411 + ychF Synpcc7942_0554 0.75 -0.4 537,411 + ychF Synpcc7942_0554 0.75 +0.5 537,411 + ychF Synpcc7942_0554 0.75 -0.5 537,411 + ychF Synpcc7942_0554 0.75 -1.0 537,411 + ychF Synpcc7942_0554 0.75 -1.9 537,411 + ychF Synpcc7942_0554 0.75 +0.5 537,419 - ychF Synpcc7942_0554 0.76 -1.6 537,419 - ychF Synpcc7942_0554 0.76 +0.2 537,419 - ychF Synpcc7942_0554 0.76 +0.6 537,419 - ychF Synpcc7942_0554 0.76 +0.6 537,419 - ychF Synpcc7942_0554 0.76 -3.0 537,419 - ychF Synpcc7942_0554 0.76 -0.4 537,419 - ychF Synpcc7942_0554 0.76 -2.2 537,419 - ychF Synpcc7942_0554 0.76 +2.9 537,451 + ychF Synpcc7942_0554 0.78 -0.2 537,466 + ychF Synpcc7942_0554 0.80 +0.7 537,474 - ychF Synpcc7942_0554 0.81 -1.3 537,492 + ychF Synpcc7942_0554 0.82 +0.1 537,494 + ychF Synpcc7942_0554 0.82 +1.6 537,494 + ychF Synpcc7942_0554 0.82 +2.2 537,502 + -0.4 537,510 + ychF Synpcc7942_0554 0.84 +0.5 537,517 - ychF Synpcc7942_0554 0.85 +1.4
Or see this region's nucleotide sequence