Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0480 and Synpcc7942_0481 are separated by 78 nucleotides Synpcc7942_0481 and Synpcc7942_0482 are separated by 175 nucleotides
Synpcc7942_0480: Synpcc7942_0480 - GAF sensor signal transduction histidine kinase, at 463,901 to 465,634
_0480
Synpcc7942_0481: Synpcc7942_0481 - protease, at 465,713 to 466,828
_0481
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Position (kb) 465
466
467 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 464.718 kb on - strand, within Synpcc7942_0480 at 464.718 kb on - strand, within Synpcc7942_0480 at 464.745 kb on - strand, within Synpcc7942_0480 at 464.758 kb on + strand, within Synpcc7942_0480 at 464.768 kb on + strand, within Synpcc7942_0480 at 464.773 kb on + strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.781 kb on - strand, within Synpcc7942_0480 at 464.800 kb on - strand, within Synpcc7942_0480 at 464.806 kb on - strand, within Synpcc7942_0480 at 464.826 kb on + strand, within Synpcc7942_0480 at 464.865 kb on - strand, within Synpcc7942_0480 at 464.881 kb on + strand, within Synpcc7942_0480 at 464.907 kb on - strand, within Synpcc7942_0480 at 464.925 kb on - strand, within Synpcc7942_0480 at 464.969 kb on + strand, within Synpcc7942_0480 at 464.996 kb on - strand, within Synpcc7942_0480 at 465.000 kb on + strand, within Synpcc7942_0480 at 465.008 kb on - strand, within Synpcc7942_0480 at 465.011 kb on + strand, within Synpcc7942_0480 at 465.052 kb on - strand, within Synpcc7942_0480 at 465.073 kb on + strand, within Synpcc7942_0480 at 465.099 kb on - strand, within Synpcc7942_0480 at 465.112 kb on + strand, within Synpcc7942_0480 at 465.134 kb on + strand, within Synpcc7942_0480 at 465.163 kb on - strand, within Synpcc7942_0480 at 465.165 kb on - strand, within Synpcc7942_0480 at 465.174 kb on + strand, within Synpcc7942_0480 at 465.179 kb on + strand, within Synpcc7942_0480 at 465.187 kb on - strand, within Synpcc7942_0480 at 465.191 kb on + strand, within Synpcc7942_0480 at 465.194 kb on - strand, within Synpcc7942_0480 at 465.204 kb on - strand, within Synpcc7942_0480 at 465.238 kb on + strand, within Synpcc7942_0480 at 465.246 kb on - strand, within Synpcc7942_0480 at 465.272 kb on + strand, within Synpcc7942_0480 at 465.273 kb on + strand, within Synpcc7942_0480 at 465.274 kb on + strand, within Synpcc7942_0480 at 465.281 kb on + strand, within Synpcc7942_0480 at 465.282 kb on - strand, within Synpcc7942_0480 at 465.282 kb on - strand, within Synpcc7942_0480 at 465.289 kb on - strand, within Synpcc7942_0480 at 465.318 kb on + strand, within Synpcc7942_0480 at 465.322 kb on - strand, within Synpcc7942_0480 at 465.326 kb on - strand, within Synpcc7942_0480 at 465.352 kb on + strand, within Synpcc7942_0480 at 465.360 kb on - strand, within Synpcc7942_0480 at 465.384 kb on + strand, within Synpcc7942_0480 at 465.384 kb on + strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.404 kb on - strand, within Synpcc7942_0480 at 465.414 kb on - strand, within Synpcc7942_0480 at 465.460 kb on - strand, within Synpcc7942_0480 at 465.461 kb on - strand at 465.463 kb on + strand at 465.479 kb on - strand at 465.508 kb on - strand at 465.508 kb on - strand at 465.508 kb on - strand at 465.509 kb on - strand at 465.509 kb on - strand at 465.517 kb on + strand at 465.519 kb on + strand at 465.532 kb on + strand at 465.535 kb on + strand at 465.537 kb on + strand at 465.538 kb on - strand at 465.545 kb on - strand at 465.559 kb on + strand at 465.564 kb on + strand at 465.569 kb on + strand at 465.572 kb on - strand at 465.583 kb on - strand at 465.587 kb on + strand at 465.596 kb on + strand at 465.646 kb on - strand at 465.665 kb on - strand at 465.666 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.676 kb on - strand at 465.739 kb on + strand at 465.743 kb on + strand at 465.743 kb on + strand at 465.743 kb on - strand at 465.750 kb on + strand at 465.750 kb on + strand at 465.750 kb on + strand at 465.758 kb on - strand at 465.758 kb on - strand at 465.758 kb on - strand at 465.781 kb on - strand at 465.800 kb on + strand at 465.800 kb on + strand at 465.801 kb on + strand at 465.801 kb on + strand at 465.808 kb on - strand at 465.808 kb on - strand at 465.809 kb on - strand at 465.809 kb on - strand at 465.809 kb on - strand at 465.809 kb on - strand at 465.814 kb on + strand at 465.816 kb on - strand at 465.820 kb on + strand at 465.821 kb on - strand at 465.828 kb on + strand, within Synpcc7942_0481 at 465.828 kb on + strand, within Synpcc7942_0481 at 465.828 kb on - strand, within Synpcc7942_0481 at 465.828 kb on - strand, within Synpcc7942_0481 at 465.831 kb on - strand, within Synpcc7942_0481 at 465.833 kb on + strand, within Synpcc7942_0481 at 465.837 kb on + strand, within Synpcc7942_0481 at 465.845 kb on - strand, within Synpcc7942_0481 at 465.879 kb on - strand, within Synpcc7942_0481 at 465.902 kb on + strand, within Synpcc7942_0481 at 465.902 kb on + strand, within Synpcc7942_0481 at 465.910 kb on - strand, within Synpcc7942_0481 at 465.910 kb on - strand, within Synpcc7942_0481 at 465.980 kb on + strand at 466.004 kb on - strand, within Synpcc7942_0481 at 466.043 kb on + strand, within Synpcc7942_0481 at 466.086 kb on - strand, within Synpcc7942_0481 at 466.147 kb on - strand, within Synpcc7942_0481 at 466.177 kb on - strand, within Synpcc7942_0481 at 466.217 kb on + strand, within Synpcc7942_0481 at 466.225 kb on - strand, within Synpcc7942_0481 at 466.228 kb on + strand, within Synpcc7942_0481 at 466.277 kb on - strand, within Synpcc7942_0481 at 466.282 kb on - strand, within Synpcc7942_0481 at 466.305 kb on - strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.341 kb on - strand, within Synpcc7942_0481 at 466.436 kb on + strand, within Synpcc7942_0481 at 466.626 kb on + strand, within Synpcc7942_0481 at 466.634 kb on - strand, within Synpcc7942_0481 at 466.637 kb on + strand, within Synpcc7942_0481 at 466.645 kb on - strand, within Synpcc7942_0481 at 466.715 kb on - strand, within Synpcc7942_0481 at 466.731 kb on - strand at 466.756 kb on + strand at 466.809 kb on + strand at 466.847 kb on - strand at 466.887 kb on - strand at 466.892 kb on - strand at 466.909 kb on + strand at 466.909 kb on + strand at 466.915 kb on - strand at 466.922 kb on - strand at 466.930 kb on - strand at 466.967 kb on - strand at 467.001 kb on + strand at 467.015 kb on - strand at 467.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 464,718 - Synpcc7942_0480 0.47 -2.0 464,718 - Synpcc7942_0480 0.47 -0.4 464,745 - Synpcc7942_0480 0.49 -0.4 464,758 + Synpcc7942_0480 0.49 -1.0 464,768 + Synpcc7942_0480 0.50 -1.7 464,773 + Synpcc7942_0480 0.50 +1.0 464,776 - Synpcc7942_0480 0.50 +0.8 464,776 - Synpcc7942_0480 0.50 +0.6 464,776 - Synpcc7942_0480 0.50 -2.0 464,776 - Synpcc7942_0480 0.50 -0.2 464,781 - Synpcc7942_0480 0.51 +0.1 464,800 - Synpcc7942_0480 0.52 +0.2 464,806 - Synpcc7942_0480 0.52 -1.1 464,826 + Synpcc7942_0480 0.53 +2.2 464,865 - Synpcc7942_0480 0.56 -0.4 464,881 + Synpcc7942_0480 0.57 +1.4 464,907 - Synpcc7942_0480 0.58 +0.6 464,925 - Synpcc7942_0480 0.59 +2.2 464,969 + Synpcc7942_0480 0.62 +0.6 464,996 - Synpcc7942_0480 0.63 -0.1 465,000 + Synpcc7942_0480 0.63 -0.4 465,008 - Synpcc7942_0480 0.64 +0.9 465,011 + Synpcc7942_0480 0.64 -2.2 465,052 - Synpcc7942_0480 0.66 -1.6 465,073 + Synpcc7942_0480 0.68 +0.5 465,099 - Synpcc7942_0480 0.69 -1.4 465,112 + Synpcc7942_0480 0.70 -1.7 465,134 + Synpcc7942_0480 0.71 +0.2 465,163 - Synpcc7942_0480 0.73 +1.1 465,165 - Synpcc7942_0480 0.73 -0.6 465,174 + Synpcc7942_0480 0.73 -0.4 465,179 + Synpcc7942_0480 0.74 -0.4 465,187 - Synpcc7942_0480 0.74 -1.4 465,191 + Synpcc7942_0480 0.74 +0.9 465,194 - Synpcc7942_0480 0.75 +1.6 465,204 - Synpcc7942_0480 0.75 -0.4 465,238 + Synpcc7942_0480 0.77 +1.2 465,246 - Synpcc7942_0480 0.78 +0.9 465,272 + Synpcc7942_0480 0.79 +0.4 465,273 + Synpcc7942_0480 0.79 +1.6 465,274 + Synpcc7942_0480 0.79 -1.4 465,281 + Synpcc7942_0480 0.80 +0.9 465,282 - Synpcc7942_0480 0.80 -1.1 465,282 - Synpcc7942_0480 0.80 -1.0 465,289 - Synpcc7942_0480 0.80 +0.6 465,318 + Synpcc7942_0480 0.82 -1.4 465,322 - Synpcc7942_0480 0.82 -1.0 465,326 - Synpcc7942_0480 0.82 +3.2 465,352 + Synpcc7942_0480 0.84 +0.0 465,360 - Synpcc7942_0480 0.84 -0.6 465,384 + Synpcc7942_0480 0.86 +0.9 465,384 + Synpcc7942_0480 0.86 +0.6 465,392 - Synpcc7942_0480 0.86 -2.1 465,392 - Synpcc7942_0480 0.86 -1.5 465,392 - Synpcc7942_0480 0.86 -1.0 465,392 - Synpcc7942_0480 0.86 -0.4 465,404 - Synpcc7942_0480 0.87 +1.1 465,414 - Synpcc7942_0480 0.87 +0.8 465,460 - Synpcc7942_0480 0.90 +1.4 465,461 - +1.0 465,463 + -0.3 465,479 - +1.6 465,508 - +0.2 465,508 - +0.6 465,508 - -0.4 465,509 - +3.8 465,509 - +0.2 465,517 + -0.4 465,519 + +1.6 465,532 + +0.8 465,535 + +0.6 465,537 + -2.2 465,538 - +1.6 465,545 - +2.6 465,559 + -0.6 465,564 + -0.4 465,569 + +0.6 465,572 - -1.4 465,583 - +1.1 465,587 + -0.1 465,596 + -0.1 465,646 - -0.4 465,665 - -0.1 465,666 + +0.6 465,668 + +1.2 465,668 + -1.1 465,668 + -1.7 465,668 + -0.4 465,668 + +0.2 465,668 + -2.8 465,676 - +0.6 465,739 + -4.5 465,743 + +1.2 465,743 + +0.9 465,743 - +2.9 465,750 + +2.3 465,750 + +3.0 465,750 + -3.3 465,758 - -2.0 465,758 - +0.6 465,758 - +0.0 465,781 - +0.6 465,800 + -1.2 465,800 + +1.2 465,801 + -2.8 465,801 + +0.2 465,808 - +1.4 465,808 - -2.5 465,809 - +0.2 465,809 - +1.0 465,809 - -1.0 465,809 - +2.6 465,814 + +1.1 465,816 - -2.2 465,820 + +0.4 465,821 - +1.1 465,828 + Synpcc7942_0481 0.10 -0.4 465,828 + Synpcc7942_0481 0.10 +1.2 465,828 - Synpcc7942_0481 0.10 +0.6 465,828 - Synpcc7942_0481 0.10 -0.2 465,831 - Synpcc7942_0481 0.11 +0.5 465,833 + Synpcc7942_0481 0.11 +0.6 465,837 + Synpcc7942_0481 0.11 -0.4 465,845 - Synpcc7942_0481 0.12 +0.0 465,879 - Synpcc7942_0481 0.15 +0.6 465,902 + Synpcc7942_0481 0.17 -0.4 465,902 + Synpcc7942_0481 0.17 -1.0 465,910 - Synpcc7942_0481 0.18 +0.8 465,910 - Synpcc7942_0481 0.18 +1.0 465,980 + +2.9 466,004 - Synpcc7942_0481 0.26 -2.0 466,043 + Synpcc7942_0481 0.30 +2.4 466,086 - Synpcc7942_0481 0.33 -2.4 466,147 - Synpcc7942_0481 0.39 +2.2 466,177 - Synpcc7942_0481 0.42 -1.2 466,217 + Synpcc7942_0481 0.45 -2.8 466,225 - Synpcc7942_0481 0.46 +3.2 466,228 + Synpcc7942_0481 0.46 -0.4 466,277 - Synpcc7942_0481 0.51 -1.0 466,282 - Synpcc7942_0481 0.51 +1.0 466,305 - Synpcc7942_0481 0.53 +1.5 466,318 + Synpcc7942_0481 0.54 +1.0 466,318 + Synpcc7942_0481 0.54 +0.8 466,341 - Synpcc7942_0481 0.56 +0.5 466,436 + Synpcc7942_0481 0.65 +1.6 466,626 + Synpcc7942_0481 0.82 -0.6 466,634 - Synpcc7942_0481 0.83 +0.4 466,637 + Synpcc7942_0481 0.83 +3.7 466,645 - Synpcc7942_0481 0.84 +1.6 466,715 - Synpcc7942_0481 0.90 -0.1 466,731 - +0.3 466,756 + -0.4 466,809 + -1.1 466,847 - -2.0 466,887 - -1.2 466,892 - -1.2 466,909 + +0.6 466,909 + -3.0 466,915 - +0.6 466,922 - -0.1 466,930 - -1.6 466,967 - +2.0 467,001 + -0.8 467,015 - +2.2 467,015 - -1.4
Or see this region's nucleotide sequence