Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psbAI and Synpcc7942_0425 are separated by 108 nucleotides Synpcc7942_0425 and scpB are separated by 93 nucleotides scpB and Synpcc7942_0427 are separated by 16 nucleotides
Synpcc7942_0424: psbAI - photosystem q(b) protein, at 413,873 to 414,955
psbAI
Synpcc7942_0425: Synpcc7942_0425 - hypothetical protein, at 415,064 to 415,441
_0425
Synpcc7942_0426: scpB - condensin subunit ScpB, at 415,535 to 416,086
scpB
Synpcc7942_0427: Synpcc7942_0427 - ATPase, at 416,103 to 416,951
_0427
Position (kb) 415
416 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 414.065 kb on - strand, within psbAI at 414.068 kb on + strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.190 kb on + strand, within psbAI at 414.283 kb on + strand, within psbAI at 414.298 kb on + strand, within psbAI at 414.325 kb on - strand, within psbAI at 414.699 kb on + strand, within psbAI at 414.710 kb on + strand, within psbAI at 414.760 kb on - strand, within psbAI at 414.838 kb on - strand, within psbAI at 415.061 kb on + strand at 415.061 kb on + strand at 415.069 kb on - strand at 415.216 kb on - strand, within Synpcc7942_0425 at 415.391 kb on + strand, within Synpcc7942_0425 at 415.393 kb on + strand, within Synpcc7942_0425 at 415.393 kb on + strand, within Synpcc7942_0425 at 415.401 kb on - strand, within Synpcc7942_0425 at 415.436 kb on - strand at 415.554 kb on + strand at 415.605 kb on + strand, within scpB at 415.607 kb on + strand, within scpB at 415.630 kb on - strand, within scpB at 415.648 kb on + strand, within scpB at 415.738 kb on - strand, within scpB at 415.738 kb on - strand, within scpB at 415.750 kb on + strand, within scpB at 415.758 kb on - strand, within scpB at 415.758 kb on - strand, within scpB at 415.758 kb on - strand, within scpB at 415.768 kb on - strand, within scpB at 415.817 kb on + strand, within scpB at 415.845 kb on + strand, within scpB at 415.879 kb on - strand, within scpB at 415.879 kb on - strand, within scpB at 415.912 kb on - strand, within scpB at 415.922 kb on + strand, within scpB at 415.975 kb on - strand, within scpB at 415.995 kb on + strand, within scpB at 416.003 kb on - strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.045 kb on - strand at 416.045 kb on - strand at 416.051 kb on - strand at 416.082 kb on - strand at 416.102 kb on - strand at 416.142 kb on - strand at 416.171 kb on - strand at 416.171 kb on - strand at 416.176 kb on - strand at 416.176 kb on - strand at 416.199 kb on + strand, within Synpcc7942_0427 at 416.201 kb on + strand, within Synpcc7942_0427 at 416.235 kb on + strand, within Synpcc7942_0427 at 416.237 kb on - strand, within Synpcc7942_0427 at 416.261 kb on + strand, within Synpcc7942_0427 at 416.262 kb on + strand, within Synpcc7942_0427 at 416.270 kb on - strand, within Synpcc7942_0427 at 416.326 kb on - strand, within Synpcc7942_0427 at 416.374 kb on - strand, within Synpcc7942_0427 at 416.376 kb on - strand, within Synpcc7942_0427 at 416.385 kb on + strand, within Synpcc7942_0427
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 414,065 - psbAI Synpcc7942_0424 0.18 +1.4 414,068 + psbAI Synpcc7942_0424 0.18 +0.0 414,089 - psbAI Synpcc7942_0424 0.20 +1.2 414,089 - psbAI Synpcc7942_0424 0.20 +0.0 414,190 + psbAI Synpcc7942_0424 0.29 +0.6 414,283 + psbAI Synpcc7942_0424 0.38 -2.0 414,298 + psbAI Synpcc7942_0424 0.39 +1.6 414,325 - psbAI Synpcc7942_0424 0.42 +0.0 414,699 + psbAI Synpcc7942_0424 0.76 +0.6 414,710 + psbAI Synpcc7942_0424 0.77 -2.0 414,760 - psbAI Synpcc7942_0424 0.82 +1.1 414,838 - psbAI Synpcc7942_0424 0.89 +1.4 415,061 + -2.3 415,061 + -1.7 415,069 - +2.0 415,216 - Synpcc7942_0425 0.40 -0.7 415,391 + Synpcc7942_0425 0.87 -2.0 415,393 + Synpcc7942_0425 0.87 -2.2 415,393 + Synpcc7942_0425 0.87 +0.6 415,401 - Synpcc7942_0425 0.89 -1.6 415,436 - +2.0 415,554 + -0.4 415,605 + scpB Synpcc7942_0426 0.13 -0.4 415,607 + scpB Synpcc7942_0426 0.13 +0.2 415,630 - scpB Synpcc7942_0426 0.17 +1.5 415,648 + scpB Synpcc7942_0426 0.20 +2.1 415,738 - scpB Synpcc7942_0426 0.37 -2.0 415,738 - scpB Synpcc7942_0426 0.37 -0.1 415,750 + scpB Synpcc7942_0426 0.39 -0.7 415,758 - scpB Synpcc7942_0426 0.40 +1.4 415,758 - scpB Synpcc7942_0426 0.40 -1.0 415,758 - scpB Synpcc7942_0426 0.40 -0.8 415,768 - scpB Synpcc7942_0426 0.42 +0.3 415,817 + scpB Synpcc7942_0426 0.51 +1.6 415,845 + scpB Synpcc7942_0426 0.56 +0.6 415,879 - scpB Synpcc7942_0426 0.62 -0.4 415,879 - scpB Synpcc7942_0426 0.62 -1.0 415,912 - scpB Synpcc7942_0426 0.68 -0.1 415,922 + scpB Synpcc7942_0426 0.70 -0.5 415,975 - scpB Synpcc7942_0426 0.80 -1.4 415,995 + scpB Synpcc7942_0426 0.83 -0.1 416,003 - scpB Synpcc7942_0426 0.85 -0.4 416,023 + scpB Synpcc7942_0426 0.88 -2.0 416,023 + scpB Synpcc7942_0426 0.88 +3.0 416,023 + scpB Synpcc7942_0426 0.88 -1.3 416,023 + scpB Synpcc7942_0426 0.88 -2.2 416,023 + scpB Synpcc7942_0426 0.88 +2.5 416,023 + scpB Synpcc7942_0426 0.88 -1.7 416,031 - -2.0 416,031 - +1.2 416,031 - -1.1 416,031 - -2.2 416,031 - -0.2 416,031 - -1.0 416,031 - -1.7 416,031 - -1.2 416,045 - +0.6 416,045 - -1.0 416,051 - -1.0 416,082 - -2.4 416,102 - +1.9 416,142 - -1.5 416,171 - -0.8 416,171 - +0.8 416,176 - +1.6 416,176 - -1.7 416,199 + Synpcc7942_0427 0.11 -1.2 416,201 + Synpcc7942_0427 0.12 +0.5 416,235 + Synpcc7942_0427 0.16 +0.2 416,237 - Synpcc7942_0427 0.16 -1.6 416,261 + Synpcc7942_0427 0.19 +1.6 416,262 + Synpcc7942_0427 0.19 +0.4 416,270 - Synpcc7942_0427 0.20 +1.3 416,326 - Synpcc7942_0427 0.26 +2.6 416,374 - Synpcc7942_0427 0.32 +1.8 416,376 - Synpcc7942_0427 0.32 +0.6 416,385 + Synpcc7942_0427 0.33 +0.8
Or see this region's nucleotide sequence