Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0349 and Synpcc7942_0350 are separated by 349 nucleotides Synpcc7942_0350 and ycf22 are separated by 27 nucleotides
Synpcc7942_0349: Synpcc7942_0349 - hypothetical protein, at 341,883 to 342,443
_0349
Synpcc7942_0350: Synpcc7942_0350 - ATPase, at 342,793 to 343,671
_0350
Synpcc7942_0351: ycf22 - putative ABC transport system substrate-binding protein, at 343,699 to 344,832
ycf22
Position (kb) 342
343
344 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 341.800 kb on - strand at 341.838 kb on + strand at 341.851 kb on + strand at 341.851 kb on + strand at 341.859 kb on - strand at 341.859 kb on - strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.882 kb on + strand at 341.888 kb on - strand at 341.900 kb on - strand at 341.906 kb on - strand at 341.934 kb on - strand at 341.965 kb on + strand, within Synpcc7942_0349 at 341.965 kb on - strand, within Synpcc7942_0349 at 342.009 kb on + strand, within Synpcc7942_0349 at 342.019 kb on + strand, within Synpcc7942_0349 at 342.027 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.073 kb on - strand, within Synpcc7942_0349 at 342.079 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.170 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.190 kb on + strand, within Synpcc7942_0349 at 342.198 kb on - strand, within Synpcc7942_0349 at 342.209 kb on + strand, within Synpcc7942_0349 at 342.285 kb on + strand, within Synpcc7942_0349 at 342.286 kb on - strand, within Synpcc7942_0349 at 342.344 kb on - strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.393 kb on + strand at 342.450 kb on + strand at 342.450 kb on + strand at 342.458 kb on - strand at 342.473 kb on + strand at 342.473 kb on + strand at 342.475 kb on + strand at 342.488 kb on + strand at 342.529 kb on + strand at 342.544 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.556 kb on + strand at 342.559 kb on - strand at 342.564 kb on - strand at 342.569 kb on - strand at 342.592 kb on - strand at 342.610 kb on - strand at 342.647 kb on - strand at 342.647 kb on - strand at 342.689 kb on + strand at 342.689 kb on - strand at 342.694 kb on - strand at 342.694 kb on - strand at 342.699 kb on + strand at 342.706 kb on + strand at 342.706 kb on + strand at 342.709 kb on - strand at 342.711 kb on + strand at 342.711 kb on + strand at 342.719 kb on - strand at 342.719 kb on - strand at 342.731 kb on + strand at 342.774 kb on + strand at 342.800 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.811 kb on - strand at 342.835 kb on + strand at 342.845 kb on + strand at 342.872 kb on - strand at 342.875 kb on + strand at 342.901 kb on + strand, within Synpcc7942_0350 at 342.901 kb on - strand, within Synpcc7942_0350 at 342.949 kb on + strand, within Synpcc7942_0350 at 342.949 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.962 kb on - strand, within Synpcc7942_0350 at 342.966 kb on + strand, within Synpcc7942_0350 at 342.967 kb on - strand, within Synpcc7942_0350 at 342.981 kb on - strand, within Synpcc7942_0350 at 343.015 kb on - strand, within Synpcc7942_0350 at 343.048 kb on + strand, within Synpcc7942_0350 at 343.050 kb on - strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.085 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.095 kb on - strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.126 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.164 kb on + strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.184 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.237 kb on + strand, within Synpcc7942_0350 at 343.266 kb on - strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.271 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.278 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.309 kb on - strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.319 kb on - strand, within Synpcc7942_0350 at 343.331 kb on - strand, within Synpcc7942_0350 at 343.355 kb on + strand, within Synpcc7942_0350 at 343.360 kb on + strand, within Synpcc7942_0350 at 343.361 kb on - strand, within Synpcc7942_0350 at 343.363 kb on - strand, within Synpcc7942_0350 at 343.407 kb on + strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.433 kb on + strand, within Synpcc7942_0350 at 343.458 kb on - strand, within Synpcc7942_0350 at 343.463 kb on + strand, within Synpcc7942_0350 at 343.471 kb on - strand, within Synpcc7942_0350 at 343.471 kb on - strand, within Synpcc7942_0350 at 343.480 kb on + strand at 343.488 kb on - strand, within Synpcc7942_0350 at 343.509 kb on + strand, within Synpcc7942_0350 at 343.530 kb on - strand, within Synpcc7942_0350 at 343.535 kb on + strand, within Synpcc7942_0350 at 343.564 kb on - strand, within Synpcc7942_0350 at 343.576 kb on - strand, within Synpcc7942_0350 at 343.591 kb on + strand at 343.596 kb on + strand at 343.599 kb on - strand at 343.606 kb on + strand at 343.611 kb on + strand at 343.701 kb on - strand at 343.727 kb on + strand at 343.769 kb on + strand at 343.791 kb on + strand at 343.804 kb on - strand at 343.841 kb on + strand, within ycf22 at 343.880 kb on + strand, within ycf22 at 343.897 kb on + strand, within ycf22 at 343.912 kb on + strand, within ycf22 at 343.915 kb on - strand, within ycf22 at 343.915 kb on - strand, within ycf22 at 343.920 kb on - strand, within ycf22 at 343.922 kb on + strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.933 kb on - strand, within ycf22 at 344.003 kb on - strand, within ycf22 at 344.015 kb on + strand, within ycf22 at 344.022 kb on + strand, within ycf22 at 344.022 kb on + strand, within ycf22 at 344.064 kb on + strand, within ycf22 at 344.064 kb on + strand, within ycf22 at 344.127 kb on + strand, within ycf22 at 344.131 kb on - strand, within ycf22 at 344.184 kb on + strand, within ycf22 at 344.202 kb on + strand, within ycf22 at 344.210 kb on - strand, within ycf22 at 344.210 kb on - strand, within ycf22 at 344.211 kb on + strand, within ycf22 at 344.211 kb on + strand, within ycf22 at 344.219 kb on - strand, within ycf22 at 344.277 kb on - strand, within ycf22 at 344.315 kb on - strand, within ycf22 at 344.326 kb on + strand, within ycf22 at 344.334 kb on - strand, within ycf22 at 344.361 kb on - strand, within ycf22 at 344.389 kb on + strand, within ycf22 at 344.439 kb on - strand, within ycf22 at 344.441 kb on + strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.518 kb on - strand, within ycf22 at 344.518 kb on - strand, within ycf22 at 344.551 kb on + strand, within ycf22 at 344.559 kb on - strand, within ycf22 at 344.559 kb on - strand, within ycf22 at 344.587 kb on - strand, within ycf22 at 344.591 kb on + strand, within ycf22 at 344.641 kb on + strand, within ycf22
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 341,800 - -1.4 341,838 + -3.0 341,851 + -0.4 341,851 + -3.4 341,859 - -2.0 341,859 - -0.3 341,880 + -2.8 341,880 + -1.8 341,880 + +1.9 341,882 + -0.0 341,888 - +0.6 341,900 - -1.3 341,906 - -1.4 341,934 - -3.1 341,965 + Synpcc7942_0349 0.15 -0.0 341,965 - Synpcc7942_0349 0.15 -2.6 342,009 + Synpcc7942_0349 0.22 -0.3 342,019 + Synpcc7942_0349 0.24 +1.9 342,027 - Synpcc7942_0349 0.26 +0.6 342,032 - Synpcc7942_0349 0.27 -2.0 342,032 - Synpcc7942_0349 0.27 -1.0 342,073 - Synpcc7942_0349 0.34 +2.1 342,079 + Synpcc7942_0349 0.35 -1.0 342,167 + Synpcc7942_0349 0.51 +0.6 342,167 + Synpcc7942_0349 0.51 -2.0 342,170 - Synpcc7942_0349 0.51 +1.2 342,175 - Synpcc7942_0349 0.52 -2.3 342,175 - Synpcc7942_0349 0.52 -1.8 342,190 + Synpcc7942_0349 0.55 -0.4 342,198 - Synpcc7942_0349 0.56 -1.4 342,209 + Synpcc7942_0349 0.58 -0.4 342,285 + Synpcc7942_0349 0.72 +0.6 342,286 - Synpcc7942_0349 0.72 -0.4 342,344 - Synpcc7942_0349 0.82 -3.0 342,359 + Synpcc7942_0349 0.85 -0.4 342,359 + Synpcc7942_0349 0.85 -1.0 342,359 + Synpcc7942_0349 0.85 +0.6 342,393 + -2.0 342,450 + +0.3 342,450 + +1.1 342,458 - -0.0 342,473 + -1.0 342,473 + +1.3 342,475 + -0.4 342,488 + -0.2 342,529 + -1.0 342,544 - -2.8 342,549 - +0.0 342,549 - -2.6 342,549 - -1.0 342,556 + +1.4 342,559 - -0.4 342,564 - -1.9 342,569 - +2.9 342,592 - -2.3 342,610 - -0.7 342,647 - -0.4 342,647 - -1.1 342,689 + +0.6 342,689 - +0.1 342,694 - +1.6 342,694 - -1.8 342,699 + -1.3 342,706 + +1.7 342,706 + -2.0 342,709 - -1.8 342,711 + -0.4 342,711 + +1.0 342,719 - +1.6 342,719 - +1.2 342,731 + -0.7 342,774 + -0.4 342,800 + +1.4 342,801 + -0.4 342,801 + -0.4 342,801 + -0.4 342,811 - +1.1 342,835 + -1.8 342,845 + +1.9 342,872 - +0.2 342,875 + +2.3 342,901 + Synpcc7942_0350 0.12 -3.1 342,901 - Synpcc7942_0350 0.12 -1.0 342,949 + Synpcc7942_0350 0.18 -2.4 342,949 - Synpcc7942_0350 0.18 -0.4 342,957 - Synpcc7942_0350 0.19 -2.3 342,957 - Synpcc7942_0350 0.19 -0.4 342,959 + Synpcc7942_0350 0.19 -2.8 342,959 + Synpcc7942_0350 0.19 -0.4 342,959 + Synpcc7942_0350 0.19 -2.4 342,959 + Synpcc7942_0350 0.19 -1.8 342,962 - Synpcc7942_0350 0.19 +1.1 342,966 + Synpcc7942_0350 0.20 -3.5 342,967 - Synpcc7942_0350 0.20 -2.3 342,981 - Synpcc7942_0350 0.21 -3.2 343,015 - Synpcc7942_0350 0.25 -1.0 343,048 + Synpcc7942_0350 0.29 -0.6 343,050 - Synpcc7942_0350 0.29 -3.9 343,074 + Synpcc7942_0350 0.32 +1.3 343,074 + Synpcc7942_0350 0.32 -1.8 343,085 + Synpcc7942_0350 0.33 -1.4 343,092 + Synpcc7942_0350 0.34 -0.7 343,092 + Synpcc7942_0350 0.34 +1.1 343,095 - Synpcc7942_0350 0.34 -2.5 343,119 + Synpcc7942_0350 0.37 -1.0 343,119 + Synpcc7942_0350 0.37 +0.4 343,119 + Synpcc7942_0350 0.37 -2.3 343,126 - Synpcc7942_0350 0.38 -0.4 343,127 - Synpcc7942_0350 0.38 -3.0 343,127 - Synpcc7942_0350 0.38 -2.0 343,127 - Synpcc7942_0350 0.38 -0.9 343,164 + Synpcc7942_0350 0.42 -1.0 343,172 - Synpcc7942_0350 0.43 -1.4 343,172 - Synpcc7942_0350 0.43 -3.0 343,184 + Synpcc7942_0350 0.44 +0.6 343,221 + Synpcc7942_0350 0.49 -2.8 343,221 + Synpcc7942_0350 0.49 -1.4 343,221 + Synpcc7942_0350 0.49 -2.9 343,237 + Synpcc7942_0350 0.51 +0.6 343,266 - Synpcc7942_0350 0.54 -1.8 343,268 + Synpcc7942_0350 0.54 -0.8 343,268 + Synpcc7942_0350 0.54 -2.8 343,268 + Synpcc7942_0350 0.54 -2.3 343,268 + Synpcc7942_0350 0.54 -0.4 343,268 + Synpcc7942_0350 0.54 -2.4 343,268 + Synpcc7942_0350 0.54 -2.4 343,268 + Synpcc7942_0350 0.54 -2.3 343,268 + Synpcc7942_0350 0.54 +0.6 343,268 + Synpcc7942_0350 0.54 -1.0 343,268 + Synpcc7942_0350 0.54 -1.4 343,271 - Synpcc7942_0350 0.54 -3.0 343,276 - Synpcc7942_0350 0.55 -2.4 343,276 - Synpcc7942_0350 0.55 -1.0 343,276 - Synpcc7942_0350 0.55 +1.6 343,276 - -0.4 343,276 - Synpcc7942_0350 0.55 -0.4 343,276 - Synpcc7942_0350 0.55 -1.0 343,278 + Synpcc7942_0350 0.55 +2.2 343,301 + Synpcc7942_0350 0.58 -0.4 343,301 + Synpcc7942_0350 0.58 -1.4 343,309 - Synpcc7942_0350 0.59 -2.4 343,311 + Synpcc7942_0350 0.59 -2.7 343,311 + Synpcc7942_0350 0.59 -1.0 343,311 + Synpcc7942_0350 0.59 +0.9 343,319 - Synpcc7942_0350 0.60 -2.3 343,331 - Synpcc7942_0350 0.61 -0.8 343,355 + Synpcc7942_0350 0.64 -0.3 343,360 + Synpcc7942_0350 0.65 -2.4 343,361 - Synpcc7942_0350 0.65 -2.6 343,363 - Synpcc7942_0350 0.65 -0.9 343,407 + Synpcc7942_0350 0.70 -1.4 343,426 - Synpcc7942_0350 0.72 +1.8 343,426 - Synpcc7942_0350 0.72 -2.3 343,426 - Synpcc7942_0350 0.72 +0.7 343,433 + Synpcc7942_0350 0.73 -1.8 343,458 - Synpcc7942_0350 0.76 -1.1 343,463 + Synpcc7942_0350 0.76 +0.6 343,471 - Synpcc7942_0350 0.77 -1.8 343,471 - Synpcc7942_0350 0.77 -1.8 343,480 + -1.0 343,488 - Synpcc7942_0350 0.79 -2.3 343,509 + Synpcc7942_0350 0.81 -2.4 343,530 - Synpcc7942_0350 0.84 -1.8 343,535 + Synpcc7942_0350 0.84 -2.8 343,564 - Synpcc7942_0350 0.88 -1.4 343,576 - Synpcc7942_0350 0.89 -1.4 343,591 + +0.6 343,596 + -2.9 343,599 - -1.8 343,606 + -1.8 343,611 + -3.0 343,701 - -0.2 343,727 + -4.3 343,769 + -2.3 343,791 + -3.0 343,804 - -3.2 343,841 + ycf22 Synpcc7942_0351 0.13 +0.6 343,880 + ycf22 Synpcc7942_0351 0.16 -0.4 343,897 + ycf22 Synpcc7942_0351 0.17 +0.1 343,912 + ycf22 Synpcc7942_0351 0.19 +0.3 343,915 - ycf22 Synpcc7942_0351 0.19 -0.2 343,915 - ycf22 Synpcc7942_0351 0.19 -2.0 343,920 - ycf22 Synpcc7942_0351 0.19 -1.0 343,922 + ycf22 Synpcc7942_0351 0.20 -3.2 343,925 - ycf22 Synpcc7942_0351 0.20 +2.8 343,925 - ycf22 Synpcc7942_0351 0.20 -1.8 343,925 - ycf22 Synpcc7942_0351 0.20 -1.8 343,925 - ycf22 Synpcc7942_0351 0.20 +1.6 343,933 - ycf22 Synpcc7942_0351 0.21 -0.6 344,003 - ycf22 Synpcc7942_0351 0.27 -2.8 344,015 + ycf22 Synpcc7942_0351 0.28 -1.8 344,022 + ycf22 Synpcc7942_0351 0.28 -0.4 344,022 + ycf22 Synpcc7942_0351 0.28 -1.8 344,064 + ycf22 Synpcc7942_0351 0.32 -0.0 344,064 + ycf22 Synpcc7942_0351 0.32 -2.0 344,127 + ycf22 Synpcc7942_0351 0.38 -2.0 344,131 - ycf22 Synpcc7942_0351 0.38 +1.9 344,184 + ycf22 Synpcc7942_0351 0.43 -2.8 344,202 + ycf22 Synpcc7942_0351 0.44 -2.4 344,210 - ycf22 Synpcc7942_0351 0.45 -1.5 344,210 - ycf22 Synpcc7942_0351 0.45 -0.2 344,211 + ycf22 Synpcc7942_0351 0.45 -1.7 344,211 + ycf22 Synpcc7942_0351 0.45 -0.4 344,219 - ycf22 Synpcc7942_0351 0.46 -1.8 344,277 - ycf22 Synpcc7942_0351 0.51 +4.7 344,315 - ycf22 Synpcc7942_0351 0.54 -2.3 344,326 + ycf22 Synpcc7942_0351 0.55 -1.4 344,334 - ycf22 Synpcc7942_0351 0.56 -3.2 344,361 - ycf22 Synpcc7942_0351 0.58 -2.3 344,389 + ycf22 Synpcc7942_0351 0.61 -2.4 344,439 - ycf22 Synpcc7942_0351 0.65 -2.3 344,441 + ycf22 Synpcc7942_0351 0.65 -1.0 344,449 - ycf22 Synpcc7942_0351 0.66 -1.0 344,449 - ycf22 Synpcc7942_0351 0.66 +1.9 344,449 - ycf22 Synpcc7942_0351 0.66 +0.9 344,449 - ycf22 Synpcc7942_0351 0.66 +0.6 344,449 - ycf22 Synpcc7942_0351 0.66 -1.4 344,518 - ycf22 Synpcc7942_0351 0.72 -2.0 344,518 - ycf22 Synpcc7942_0351 0.72 -2.3 344,551 + ycf22 Synpcc7942_0351 0.75 -1.4 344,559 - ycf22 Synpcc7942_0351 0.76 -1.8 344,559 - ycf22 Synpcc7942_0351 0.76 -1.0 344,587 - ycf22 Synpcc7942_0351 0.78 -2.4 344,591 + ycf22 Synpcc7942_0351 0.79 -1.0 344,641 + ycf22 Synpcc7942_0351 0.83 -1.4
Or see this region's nucleotide sequence