Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recA and Synpcc7942_0349 are separated by 114 nucleotides Synpcc7942_0349 and Synpcc7942_0350 are separated by 349 nucleotides
Synpcc7942_0348: recA - recombinase A, at 340,698 to 341,768
recA
Synpcc7942_0349: Synpcc7942_0349 - hypothetical protein, at 341,883 to 342,443
_0349
Synpcc7942_0350: Synpcc7942_0350 - ATPase, at 342,793 to 343,671
_0350
Position (kb) 341
342
343 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 341.765 kb on + strand at 341.800 kb on - strand at 341.838 kb on + strand at 341.851 kb on + strand at 341.851 kb on + strand at 341.859 kb on - strand at 341.859 kb on - strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.882 kb on + strand at 341.888 kb on - strand at 341.900 kb on - strand at 341.906 kb on - strand at 341.934 kb on - strand at 341.965 kb on + strand, within Synpcc7942_0349 at 341.965 kb on - strand, within Synpcc7942_0349 at 342.009 kb on + strand, within Synpcc7942_0349 at 342.019 kb on + strand, within Synpcc7942_0349 at 342.027 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.073 kb on - strand, within Synpcc7942_0349 at 342.079 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.170 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.190 kb on + strand, within Synpcc7942_0349 at 342.198 kb on - strand, within Synpcc7942_0349 at 342.209 kb on + strand, within Synpcc7942_0349 at 342.285 kb on + strand, within Synpcc7942_0349 at 342.286 kb on - strand, within Synpcc7942_0349 at 342.344 kb on - strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.393 kb on + strand at 342.450 kb on + strand at 342.450 kb on + strand at 342.458 kb on - strand at 342.473 kb on + strand at 342.473 kb on + strand at 342.475 kb on + strand at 342.488 kb on + strand at 342.529 kb on + strand at 342.544 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.556 kb on + strand at 342.559 kb on - strand at 342.564 kb on - strand at 342.569 kb on - strand at 342.592 kb on - strand at 342.610 kb on - strand at 342.647 kb on - strand at 342.647 kb on - strand at 342.689 kb on + strand at 342.689 kb on - strand at 342.694 kb on - strand at 342.694 kb on - strand at 342.699 kb on + strand at 342.706 kb on + strand at 342.706 kb on + strand at 342.709 kb on - strand at 342.711 kb on + strand at 342.711 kb on + strand at 342.719 kb on - strand at 342.719 kb on - strand at 342.731 kb on + strand at 342.774 kb on + strand at 342.800 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.811 kb on - strand at 342.835 kb on + strand at 342.845 kb on + strand at 342.872 kb on - strand at 342.875 kb on + strand at 342.901 kb on + strand, within Synpcc7942_0350 at 342.901 kb on - strand, within Synpcc7942_0350 at 342.949 kb on + strand, within Synpcc7942_0350 at 342.949 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.962 kb on - strand, within Synpcc7942_0350 at 342.966 kb on + strand, within Synpcc7942_0350 at 342.967 kb on - strand, within Synpcc7942_0350 at 342.981 kb on - strand, within Synpcc7942_0350 at 343.015 kb on - strand, within Synpcc7942_0350 at 343.048 kb on + strand, within Synpcc7942_0350 at 343.050 kb on - strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.085 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.095 kb on - strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.126 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.164 kb on + strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.184 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.237 kb on + strand, within Synpcc7942_0350 at 343.266 kb on - strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.271 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.278 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.309 kb on - strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.319 kb on - strand, within Synpcc7942_0350 at 343.331 kb on - strand, within Synpcc7942_0350 at 343.355 kb on + strand, within Synpcc7942_0350 at 343.360 kb on + strand, within Synpcc7942_0350 at 343.361 kb on - strand, within Synpcc7942_0350 at 343.363 kb on - strand, within Synpcc7942_0350 at 343.407 kb on + strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.433 kb on + strand, within Synpcc7942_0350
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 341,765 + -1.0 341,800 - -1.4 341,838 + -3.0 341,851 + -0.4 341,851 + -3.4 341,859 - -2.0 341,859 - -0.3 341,880 + -2.8 341,880 + -1.8 341,880 + +1.9 341,882 + -0.0 341,888 - +0.6 341,900 - -1.3 341,906 - -1.4 341,934 - -3.1 341,965 + Synpcc7942_0349 0.15 -0.0 341,965 - Synpcc7942_0349 0.15 -2.6 342,009 + Synpcc7942_0349 0.22 -0.3 342,019 + Synpcc7942_0349 0.24 +1.9 342,027 - Synpcc7942_0349 0.26 +0.6 342,032 - Synpcc7942_0349 0.27 -2.0 342,032 - Synpcc7942_0349 0.27 -1.0 342,073 - Synpcc7942_0349 0.34 +2.1 342,079 + Synpcc7942_0349 0.35 -1.0 342,167 + Synpcc7942_0349 0.51 +0.6 342,167 + Synpcc7942_0349 0.51 -2.0 342,170 - Synpcc7942_0349 0.51 +1.2 342,175 - Synpcc7942_0349 0.52 -2.3 342,175 - Synpcc7942_0349 0.52 -1.8 342,190 + Synpcc7942_0349 0.55 -0.4 342,198 - Synpcc7942_0349 0.56 -1.4 342,209 + Synpcc7942_0349 0.58 -0.4 342,285 + Synpcc7942_0349 0.72 +0.6 342,286 - Synpcc7942_0349 0.72 -0.4 342,344 - Synpcc7942_0349 0.82 -3.0 342,359 + Synpcc7942_0349 0.85 -0.4 342,359 + Synpcc7942_0349 0.85 -1.0 342,359 + Synpcc7942_0349 0.85 +0.6 342,393 + -2.0 342,450 + +0.3 342,450 + +1.1 342,458 - -0.0 342,473 + -1.0 342,473 + +1.3 342,475 + -0.4 342,488 + -0.2 342,529 + -1.0 342,544 - -2.8 342,549 - +0.0 342,549 - -2.6 342,549 - -1.0 342,556 + +1.4 342,559 - -0.4 342,564 - -1.9 342,569 - +2.9 342,592 - -2.3 342,610 - -0.7 342,647 - -0.4 342,647 - -1.1 342,689 + +0.6 342,689 - +0.1 342,694 - +1.6 342,694 - -1.8 342,699 + -1.3 342,706 + +1.7 342,706 + -2.0 342,709 - -1.8 342,711 + -0.4 342,711 + +1.0 342,719 - +1.6 342,719 - +1.2 342,731 + -0.7 342,774 + -0.4 342,800 + +1.4 342,801 + -0.4 342,801 + -0.4 342,801 + -0.4 342,811 - +1.1 342,835 + -1.8 342,845 + +1.9 342,872 - +0.2 342,875 + +2.3 342,901 + Synpcc7942_0350 0.12 -3.1 342,901 - Synpcc7942_0350 0.12 -1.0 342,949 + Synpcc7942_0350 0.18 -2.4 342,949 - Synpcc7942_0350 0.18 -0.4 342,957 - Synpcc7942_0350 0.19 -2.3 342,957 - Synpcc7942_0350 0.19 -0.4 342,959 + Synpcc7942_0350 0.19 -2.8 342,959 + Synpcc7942_0350 0.19 -0.4 342,959 + Synpcc7942_0350 0.19 -2.4 342,959 + Synpcc7942_0350 0.19 -1.8 342,962 - Synpcc7942_0350 0.19 +1.1 342,966 + Synpcc7942_0350 0.20 -3.5 342,967 - Synpcc7942_0350 0.20 -2.3 342,981 - Synpcc7942_0350 0.21 -3.2 343,015 - Synpcc7942_0350 0.25 -1.0 343,048 + Synpcc7942_0350 0.29 -0.6 343,050 - Synpcc7942_0350 0.29 -3.9 343,074 + Synpcc7942_0350 0.32 +1.3 343,074 + Synpcc7942_0350 0.32 -1.8 343,085 + Synpcc7942_0350 0.33 -1.4 343,092 + Synpcc7942_0350 0.34 -0.7 343,092 + Synpcc7942_0350 0.34 +1.1 343,095 - Synpcc7942_0350 0.34 -2.5 343,119 + Synpcc7942_0350 0.37 -1.0 343,119 + Synpcc7942_0350 0.37 +0.4 343,119 + Synpcc7942_0350 0.37 -2.3 343,126 - Synpcc7942_0350 0.38 -0.4 343,127 - Synpcc7942_0350 0.38 -3.0 343,127 - Synpcc7942_0350 0.38 -2.0 343,127 - Synpcc7942_0350 0.38 -0.9 343,164 + Synpcc7942_0350 0.42 -1.0 343,172 - Synpcc7942_0350 0.43 -1.4 343,172 - Synpcc7942_0350 0.43 -3.0 343,184 + Synpcc7942_0350 0.44 +0.6 343,221 + Synpcc7942_0350 0.49 -2.8 343,221 + Synpcc7942_0350 0.49 -1.4 343,221 + Synpcc7942_0350 0.49 -2.9 343,237 + Synpcc7942_0350 0.51 +0.6 343,266 - Synpcc7942_0350 0.54 -1.8 343,268 + Synpcc7942_0350 0.54 -0.8 343,268 + Synpcc7942_0350 0.54 -2.8 343,268 + Synpcc7942_0350 0.54 -2.3 343,268 + Synpcc7942_0350 0.54 -0.4 343,268 + Synpcc7942_0350 0.54 -2.4 343,268 + Synpcc7942_0350 0.54 -2.4 343,268 + Synpcc7942_0350 0.54 -2.3 343,268 + Synpcc7942_0350 0.54 +0.6 343,268 + Synpcc7942_0350 0.54 -1.0 343,268 + Synpcc7942_0350 0.54 -1.4 343,271 - Synpcc7942_0350 0.54 -3.0 343,276 - Synpcc7942_0350 0.55 -2.4 343,276 - Synpcc7942_0350 0.55 -1.0 343,276 - Synpcc7942_0350 0.55 +1.6 343,276 - -0.4 343,276 - Synpcc7942_0350 0.55 -0.4 343,276 - Synpcc7942_0350 0.55 -1.0 343,278 + Synpcc7942_0350 0.55 +2.2 343,301 + Synpcc7942_0350 0.58 -0.4 343,301 + Synpcc7942_0350 0.58 -1.4 343,309 - Synpcc7942_0350 0.59 -2.4 343,311 + Synpcc7942_0350 0.59 -2.7 343,311 + Synpcc7942_0350 0.59 -1.0 343,311 + Synpcc7942_0350 0.59 +0.9 343,319 - Synpcc7942_0350 0.60 -2.3 343,331 - Synpcc7942_0350 0.61 -0.8 343,355 + Synpcc7942_0350 0.64 -0.3 343,360 + Synpcc7942_0350 0.65 -2.4 343,361 - Synpcc7942_0350 0.65 -2.6 343,363 - Synpcc7942_0350 0.65 -0.9 343,407 + Synpcc7942_0350 0.70 -1.4 343,426 - Synpcc7942_0350 0.72 +1.8 343,426 - Synpcc7942_0350 0.72 -2.3 343,426 - Synpcc7942_0350 0.72 +0.7 343,433 + Synpcc7942_0350 0.73 -1.8
Or see this region's nucleotide sequence