Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaJ4 and gidB are separated by 561 nucleotides gidB and Synpcc7942_0268 overlap by 4 nucleotides Synpcc7942_0268 and Synpcc7942_0269 are separated by 11 nucleotides
Synpcc7942_0266: dnaJ4 - Heat shock protein DnaJ-like, at 262,638 to 263,195
dnaJ4
Synpcc7942_0267: gidB - glucose-inhibited division protein B, at 263,757 to 264,485
gidB
Synpcc7942_0268: Synpcc7942_0268 - hypothetical protein, at 264,482 to 264,964
_0268
Synpcc7942_0269: Synpcc7942_0269 - hypothetical protein, at 264,976 to 265,857
_0269
Position (kb) 263
264
265 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 262.789 kb on + strand, within dnaJ4 at 262.797 kb on - strand at 262.797 kb on - strand, within dnaJ4 at 262.799 kb on + strand, within dnaJ4 at 262.818 kb on - strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.881 kb on - strand, within dnaJ4 at 262.897 kb on + strand, within dnaJ4 at 262.908 kb on + strand, within dnaJ4 at 262.927 kb on + strand, within dnaJ4 at 262.928 kb on + strand, within dnaJ4 at 262.936 kb on - strand at 262.941 kb on - strand, within dnaJ4 at 262.946 kb on - strand, within dnaJ4 at 262.963 kb on + strand, within dnaJ4 at 262.966 kb on - strand, within dnaJ4 at 262.971 kb on - strand, within dnaJ4 at 262.989 kb on + strand, within dnaJ4 at 263.011 kb on + strand, within dnaJ4 at 263.022 kb on - strand, within dnaJ4 at 263.024 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.053 kb on + strand, within dnaJ4 at 263.068 kb on + strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.102 kb on + strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.111 kb on + strand, within dnaJ4 at 263.116 kb on + strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.178 kb on - strand at 263.185 kb on - strand at 263.195 kb on - strand at 263.225 kb on + strand at 263.230 kb on + strand at 263.233 kb on - strand at 263.237 kb on - strand at 263.238 kb on - strand at 263.267 kb on + strand at 263.296 kb on + strand at 263.525 kb on - strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.609 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.621 kb on + strand at 263.623 kb on - strand at 263.624 kb on - strand at 263.631 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.674 kb on + strand at 263.723 kb on + strand at 263.736 kb on + strand at 263.737 kb on + strand at 263.761 kb on + strand at 263.799 kb on + strand at 263.800 kb on + strand at 263.806 kb on - strand at 263.815 kb on + strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.832 kb on + strand, within gidB at 263.847 kb on + strand, within gidB at 263.855 kb on - strand, within gidB at 263.896 kb on + strand, within gidB at 263.896 kb on + strand, within gidB at 263.939 kb on + strand, within gidB at 263.955 kb on + strand, within gidB at 264.013 kb on + strand, within gidB at 264.021 kb on - strand, within gidB at 264.041 kb on + strand, within gidB at 264.055 kb on - strand, within gidB at 264.060 kb on - strand, within gidB at 264.075 kb on - strand, within gidB at 264.100 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on - strand, within gidB at 264.153 kb on + strand, within gidB at 264.156 kb on + strand, within gidB at 264.186 kb on + strand, within gidB at 264.233 kb on + strand, within gidB at 264.234 kb on + strand, within gidB at 264.240 kb on - strand, within gidB at 264.244 kb on + strand, within gidB at 264.245 kb on - strand, within gidB at 264.246 kb on - strand, within gidB at 264.252 kb on - strand, within gidB at 264.278 kb on + strand, within gidB at 264.281 kb on - strand, within gidB at 264.283 kb on + strand, within gidB at 264.322 kb on + strand, within gidB at 264.330 kb on - strand, within gidB at 264.377 kb on + strand, within gidB at 264.383 kb on + strand, within gidB at 264.396 kb on - strand, within gidB at 264.401 kb on + strand, within gidB at 264.401 kb on + strand, within gidB at 264.401 kb on + strand, within gidB at 264.403 kb on + strand, within gidB at 264.413 kb on + strand at 264.436 kb on - strand at 264.459 kb on - strand at 264.466 kb on + strand at 264.474 kb on - strand at 264.497 kb on - strand at 264.509 kb on + strand at 264.522 kb on + strand at 264.529 kb on + strand at 264.535 kb on - strand, within Synpcc7942_0268 at 264.544 kb on + strand, within Synpcc7942_0268 at 264.553 kb on + strand, within Synpcc7942_0268 at 264.553 kb on + strand, within Synpcc7942_0268 at 264.579 kb on - strand, within Synpcc7942_0268 at 264.595 kb on - strand, within Synpcc7942_0268 at 264.609 kb on + strand, within Synpcc7942_0268 at 264.609 kb on + strand, within Synpcc7942_0268 at 264.617 kb on - strand, within Synpcc7942_0268 at 264.617 kb on - strand, within Synpcc7942_0268 at 264.622 kb on - strand, within Synpcc7942_0268 at 264.624 kb on + strand, within Synpcc7942_0268 at 264.632 kb on - strand, within Synpcc7942_0268 at 264.652 kb on + strand, within Synpcc7942_0268 at 264.652 kb on + strand, within Synpcc7942_0268 at 264.660 kb on - strand, within Synpcc7942_0268 at 264.680 kb on + strand, within Synpcc7942_0268 at 264.695 kb on + strand, within Synpcc7942_0268 at 264.715 kb on + strand, within Synpcc7942_0268 at 264.762 kb on - strand, within Synpcc7942_0268 at 264.794 kb on - strand, within Synpcc7942_0268 at 264.813 kb on + strand, within Synpcc7942_0268 at 264.821 kb on - strand, within Synpcc7942_0268 at 264.835 kb on + strand, within Synpcc7942_0268 at 264.835 kb on + strand, within Synpcc7942_0268 at 264.839 kb on - strand, within Synpcc7942_0268 at 264.849 kb on + strand, within Synpcc7942_0268 at 264.857 kb on - strand, within Synpcc7942_0268 at 264.857 kb on - strand, within Synpcc7942_0268 at 264.859 kb on + strand, within Synpcc7942_0268 at 264.871 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.888 kb on + strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.893 kb on + strand, within Synpcc7942_0268 at 264.922 kb on - strand at 264.940 kb on + strand at 264.940 kb on + strand at 264.940 kb on + strand at 264.948 kb on - strand at 264.968 kb on + strand at 265.081 kb on - strand, within Synpcc7942_0269 at 265.103 kb on + strand, within Synpcc7942_0269 at 265.119 kb on + strand, within Synpcc7942_0269 at 265.148 kb on - strand, within Synpcc7942_0269 at 265.148 kb on - strand, within Synpcc7942_0269 at 265.175 kb on - strand, within Synpcc7942_0269 at 265.209 kb on + strand, within Synpcc7942_0269 at 265.218 kb on + strand, within Synpcc7942_0269 at 265.226 kb on - strand, within Synpcc7942_0269 at 265.231 kb on + strand at 265.280 kb on + strand, within Synpcc7942_0269 at 265.287 kb on - strand, within Synpcc7942_0269 at 265.322 kb on + strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.371 kb on - strand, within Synpcc7942_0269 at 265.377 kb on - strand, within Synpcc7942_0269 at 265.385 kb on + strand, within Synpcc7942_0269 at 265.395 kb on + strand, within Synpcc7942_0269 at 265.428 kb on + strand, within Synpcc7942_0269 at 265.436 kb on - strand, within Synpcc7942_0269 at 265.455 kb on + strand, within Synpcc7942_0269 at 265.463 kb on - strand, within Synpcc7942_0269 at 265.473 kb on + strand, within Synpcc7942_0269 at 265.478 kb on - strand, within Synpcc7942_0269
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 262,789 + dnaJ4 Synpcc7942_0266 0.27 -1.0 262,797 - +0.6 262,797 - dnaJ4 Synpcc7942_0266 0.28 -0.4 262,799 + dnaJ4 Synpcc7942_0266 0.29 -1.2 262,818 - dnaJ4 Synpcc7942_0266 0.32 +1.0 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.0 262,827 + dnaJ4 Synpcc7942_0266 0.34 +0.9 262,827 + dnaJ4 Synpcc7942_0266 0.34 -2.4 262,881 - dnaJ4 Synpcc7942_0266 0.44 +3.4 262,897 + dnaJ4 Synpcc7942_0266 0.46 +0.6 262,908 + dnaJ4 Synpcc7942_0266 0.48 -1.8 262,927 + dnaJ4 Synpcc7942_0266 0.52 -1.0 262,928 + dnaJ4 Synpcc7942_0266 0.52 +1.1 262,936 - -1.0 262,941 - dnaJ4 Synpcc7942_0266 0.54 -0.0 262,946 - dnaJ4 Synpcc7942_0266 0.55 +1.2 262,963 + dnaJ4 Synpcc7942_0266 0.58 +0.1 262,966 - dnaJ4 Synpcc7942_0266 0.59 -0.1 262,971 - dnaJ4 Synpcc7942_0266 0.60 -0.4 262,989 + dnaJ4 Synpcc7942_0266 0.63 -0.4 263,011 + dnaJ4 Synpcc7942_0266 0.67 -0.4 263,022 - dnaJ4 Synpcc7942_0266 0.69 -2.9 263,024 - dnaJ4 Synpcc7942_0266 0.69 -2.6 263,034 - dnaJ4 Synpcc7942_0266 0.71 -2.4 263,034 - dnaJ4 Synpcc7942_0266 0.71 +3.6 263,053 + dnaJ4 Synpcc7942_0266 0.74 -1.4 263,068 + dnaJ4 Synpcc7942_0266 0.77 -1.4 263,076 - dnaJ4 Synpcc7942_0266 0.78 +1.1 263,076 - dnaJ4 Synpcc7942_0266 0.78 +1.0 263,076 - dnaJ4 Synpcc7942_0266 0.78 -0.3 263,102 + dnaJ4 Synpcc7942_0266 0.83 +0.6 263,109 - dnaJ4 Synpcc7942_0266 0.84 -2.0 263,109 - dnaJ4 Synpcc7942_0266 0.84 +0.2 263,111 + dnaJ4 Synpcc7942_0266 0.85 +0.7 263,116 + dnaJ4 Synpcc7942_0266 0.86 +2.9 263,119 - dnaJ4 Synpcc7942_0266 0.86 -1.2 263,119 - dnaJ4 Synpcc7942_0266 0.86 -2.2 263,124 - dnaJ4 Synpcc7942_0266 0.87 +1.8 263,124 - dnaJ4 Synpcc7942_0266 0.87 -1.0 263,178 - -1.3 263,185 - -2.8 263,195 - +2.5 263,225 + -0.1 263,230 + -1.4 263,233 - +3.3 263,237 - +1.7 263,238 - -1.8 263,267 + +1.6 263,296 + -0.2 263,525 - +0.6 263,603 + +1.6 263,603 + -1.2 263,603 + -1.4 263,603 + -4.1 263,603 + +0.3 263,603 + +1.3 263,603 + +1.4 263,609 - +0.6 263,611 - +1.6 263,611 - -2.1 263,611 - -0.4 263,611 - -0.4 263,611 - +1.4 263,611 - +1.2 263,611 - -1.4 263,611 - +0.6 263,611 - +0.6 263,611 - +0.6 263,611 - +3.7 263,621 + +0.8 263,623 - -1.4 263,624 - -0.2 263,631 + +1.3 263,637 + -2.0 263,637 + +1.3 263,637 + +0.2 263,674 + +2.9 263,723 + +2.1 263,736 + +0.4 263,737 + -0.6 263,761 + -4.9 263,799 + -3.1 263,800 + -0.5 263,806 - -2.4 263,815 + -2.2 263,821 - -3.9 263,821 - -4.8 263,821 - -2.0 263,832 + gidB Synpcc7942_0267 0.10 -2.8 263,847 + gidB Synpcc7942_0267 0.12 -2.4 263,855 - gidB Synpcc7942_0267 0.13 -1.4 263,896 + gidB Synpcc7942_0267 0.19 -4.2 263,896 + gidB Synpcc7942_0267 0.19 +1.4 263,939 + gidB Synpcc7942_0267 0.25 -1.1 263,955 + gidB Synpcc7942_0267 0.27 -1.0 264,013 + gidB Synpcc7942_0267 0.35 -3.1 264,021 - gidB Synpcc7942_0267 0.36 -2.2 264,041 + gidB Synpcc7942_0267 0.39 -3.3 264,055 - gidB Synpcc7942_0267 0.41 -4.5 264,060 - gidB Synpcc7942_0267 0.42 -2.2 264,075 - gidB Synpcc7942_0267 0.44 -3.1 264,100 + gidB Synpcc7942_0267 0.47 -4.0 264,119 + gidB Synpcc7942_0267 0.50 -3.5 264,119 + gidB Synpcc7942_0267 0.50 -5.2 264,119 - gidB Synpcc7942_0267 0.50 -3.6 264,153 + gidB Synpcc7942_0267 0.54 -3.8 264,156 + gidB Synpcc7942_0267 0.55 -4.2 264,186 + gidB Synpcc7942_0267 0.59 -3.0 264,233 + gidB Synpcc7942_0267 0.65 -3.7 264,234 + gidB Synpcc7942_0267 0.65 -3.0 264,240 - gidB Synpcc7942_0267 0.66 -2.8 264,244 + gidB Synpcc7942_0267 0.67 -1.4 264,245 - gidB Synpcc7942_0267 0.67 -1.3 264,246 - gidB Synpcc7942_0267 0.67 -3.9 264,252 - gidB Synpcc7942_0267 0.68 -1.8 264,278 + gidB Synpcc7942_0267 0.71 -2.6 264,281 - gidB Synpcc7942_0267 0.72 +1.6 264,283 + gidB Synpcc7942_0267 0.72 -3.4 264,322 + gidB Synpcc7942_0267 0.78 -1.5 264,330 - gidB Synpcc7942_0267 0.79 -1.8 264,377 + gidB Synpcc7942_0267 0.85 -4.3 264,383 + gidB Synpcc7942_0267 0.86 -4.6 264,396 - gidB Synpcc7942_0267 0.88 -1.6 264,401 + gidB Synpcc7942_0267 0.88 -1.0 264,401 + gidB Synpcc7942_0267 0.88 -4.0 264,401 + gidB Synpcc7942_0267 0.88 -0.5 264,403 + gidB Synpcc7942_0267 0.89 -3.1 264,413 + -0.4 264,436 - -1.0 264,459 - -1.1 264,466 + -0.7 264,474 - -1.5 264,497 - -0.8 264,509 + -1.3 264,522 + -2.9 264,529 + +0.1 264,535 - Synpcc7942_0268 0.11 +0.6 264,544 + Synpcc7942_0268 0.13 +0.0 264,553 + Synpcc7942_0268 0.15 +0.4 264,553 + Synpcc7942_0268 0.15 -1.6 264,579 - Synpcc7942_0268 0.20 -1.0 264,595 - Synpcc7942_0268 0.23 -1.0 264,609 + Synpcc7942_0268 0.26 -0.8 264,609 + Synpcc7942_0268 0.26 +2.7 264,617 - Synpcc7942_0268 0.28 +2.4 264,617 - Synpcc7942_0268 0.28 +1.1 264,622 - Synpcc7942_0268 0.29 +2.0 264,624 + Synpcc7942_0268 0.29 +0.6 264,632 - Synpcc7942_0268 0.31 -1.8 264,652 + Synpcc7942_0268 0.35 -0.7 264,652 + Synpcc7942_0268 0.35 +0.9 264,660 - Synpcc7942_0268 0.37 +0.6 264,680 + Synpcc7942_0268 0.41 -1.2 264,695 + Synpcc7942_0268 0.44 -0.2 264,715 + Synpcc7942_0268 0.48 +2.7 264,762 - Synpcc7942_0268 0.58 +0.2 264,794 - Synpcc7942_0268 0.65 +1.2 264,813 + Synpcc7942_0268 0.69 -0.2 264,821 - Synpcc7942_0268 0.70 -2.0 264,835 + Synpcc7942_0268 0.73 +0.2 264,835 + Synpcc7942_0268 0.73 -1.8 264,839 - Synpcc7942_0268 0.74 -0.4 264,849 + Synpcc7942_0268 0.76 +0.6 264,857 - Synpcc7942_0268 0.78 -2.6 264,857 - Synpcc7942_0268 0.78 +1.9 264,859 + Synpcc7942_0268 0.78 +1.7 264,871 + Synpcc7942_0268 0.81 -1.4 264,872 + Synpcc7942_0268 0.81 +1.1 264,872 + Synpcc7942_0268 0.81 +0.6 264,872 + Synpcc7942_0268 0.81 +0.9 264,872 + Synpcc7942_0268 0.81 -2.6 264,872 + Synpcc7942_0268 0.81 -1.2 264,872 + Synpcc7942_0268 0.81 -0.6 264,872 + Synpcc7942_0268 0.81 +0.8 264,880 - Synpcc7942_0268 0.82 -0.0 264,880 - Synpcc7942_0268 0.82 -0.8 264,880 - Synpcc7942_0268 0.82 -1.4 264,880 - Synpcc7942_0268 0.82 -1.4 264,880 - Synpcc7942_0268 0.82 -0.0 264,880 - Synpcc7942_0268 0.82 +0.6 264,880 - Synpcc7942_0268 0.82 -0.3 264,880 - Synpcc7942_0268 0.82 -3.1 264,880 - Synpcc7942_0268 0.82 -0.3 264,883 + Synpcc7942_0268 0.83 -0.7 264,883 + Synpcc7942_0268 0.83 +1.4 264,883 + Synpcc7942_0268 0.83 -0.4 264,888 + Synpcc7942_0268 0.84 -0.4 264,891 - Synpcc7942_0268 0.85 +1.2 264,891 - Synpcc7942_0268 0.85 +0.6 264,891 - Synpcc7942_0268 0.85 -1.0 264,891 - Synpcc7942_0268 0.85 +1.3 264,893 + Synpcc7942_0268 0.85 -0.4 264,922 - +1.7 264,940 + -0.7 264,940 + +1.4 264,940 + -1.8 264,948 - -0.4 264,968 + -1.0 265,081 - Synpcc7942_0269 0.12 -1.2 265,103 + Synpcc7942_0269 0.14 +2.3 265,119 + Synpcc7942_0269 0.16 -2.3 265,148 - Synpcc7942_0269 0.20 +1.3 265,148 - Synpcc7942_0269 0.20 -1.5 265,175 - Synpcc7942_0269 0.23 -1.7 265,209 + Synpcc7942_0269 0.26 +0.7 265,218 + Synpcc7942_0269 0.27 +1.3 265,226 - Synpcc7942_0269 0.28 +1.0 265,231 + +2.4 265,280 + Synpcc7942_0269 0.34 -0.5 265,287 - Synpcc7942_0269 0.35 -0.0 265,322 + Synpcc7942_0269 0.39 +2.3 265,330 - Synpcc7942_0269 0.40 -2.6 265,330 - Synpcc7942_0269 0.40 -0.0 265,330 - Synpcc7942_0269 0.40 -0.9 265,330 - Synpcc7942_0269 0.40 +0.8 265,371 - Synpcc7942_0269 0.45 +2.3 265,377 - Synpcc7942_0269 0.45 -0.5 265,385 + Synpcc7942_0269 0.46 +2.2 265,395 + Synpcc7942_0269 0.48 +1.0 265,428 + Synpcc7942_0269 0.51 -0.5 265,436 - Synpcc7942_0269 0.52 -0.5 265,455 + Synpcc7942_0269 0.54 +0.5 265,463 - Synpcc7942_0269 0.55 -1.5 265,473 + Synpcc7942_0269 0.56 -0.2 265,478 - Synpcc7942_0269 0.57 +0.9
Or see this region's nucleotide sequence