Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0179 and Synpcc7942_0180 are separated by 454 nucleotides Synpcc7942_0180 and Synpcc7942_0181 overlap by 4 nucleotides
Synpcc7942_0179: Synpcc7942_0179 - Secretion chaperone CsaA, at 176,742 to 177,095
_0179
Synpcc7942_0180: Synpcc7942_0180 - hypothetical protein, at 177,550 to 178,422
_0180
Synpcc7942_0181: Synpcc7942_0181 - ATPase, at 178,419 to 179,792
_0181
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 176.558 kb on - strand at 176.608 kb on + strand at 176.623 kb on - strand at 176.627 kb on + strand at 176.628 kb on - strand at 176.628 kb on - strand at 176.630 kb on - strand at 176.798 kb on - strand, within Synpcc7942_0179 at 176.803 kb on - strand, within Synpcc7942_0179 at 176.845 kb on + strand, within Synpcc7942_0179 at 176.853 kb on - strand, within Synpcc7942_0179 at 176.859 kb on - strand, within Synpcc7942_0179 at 176.929 kb on - strand, within Synpcc7942_0179 at 176.929 kb on - strand, within Synpcc7942_0179 at 176.942 kb on - strand, within Synpcc7942_0179 at 176.953 kb on + strand, within Synpcc7942_0179 at 176.953 kb on + strand, within Synpcc7942_0179 at 177.063 kb on - strand at 177.072 kb on - strand at 177.316 kb on + strand at 177.657 kb on + strand, within Synpcc7942_0180 at 177.665 kb on - strand, within Synpcc7942_0180 at 177.697 kb on + strand, within Synpcc7942_0180 at 178.107 kb on + strand at 178.121 kb on + strand, within Synpcc7942_0180 at 178.126 kb on - strand, within Synpcc7942_0180 at 178.129 kb on - strand, within Synpcc7942_0180 at 178.147 kb on - strand, within Synpcc7942_0180 at 178.272 kb on - strand, within Synpcc7942_0180 at 178.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 176,558 - -1.7 176,608 + +4.0 176,623 - +1.5 176,627 + -2.1 176,628 - -1.4 176,628 - -1.8 176,630 - -0.5 176,798 - Synpcc7942_0179 0.16 -1.8 176,803 - Synpcc7942_0179 0.17 +3.1 176,845 + Synpcc7942_0179 0.29 -2.3 176,853 - Synpcc7942_0179 0.31 +0.3 176,859 - Synpcc7942_0179 0.33 -0.3 176,929 - Synpcc7942_0179 0.53 +2.2 176,929 - Synpcc7942_0179 0.53 +1.2 176,942 - Synpcc7942_0179 0.56 -2.3 176,953 + Synpcc7942_0179 0.60 +0.5 176,953 + Synpcc7942_0179 0.60 +1.1 177,063 - -1.1 177,072 - +0.7 177,316 + +0.5 177,657 + Synpcc7942_0180 0.12 +2.7 177,665 - Synpcc7942_0180 0.13 +0.1 177,697 + Synpcc7942_0180 0.17 +3.1 178,107 + +2.5 178,121 + Synpcc7942_0180 0.65 -1.0 178,126 - Synpcc7942_0180 0.66 +1.4 178,129 - Synpcc7942_0180 0.66 -2.7 178,147 - Synpcc7942_0180 0.68 -0.3 178,272 - Synpcc7942_0180 0.83 +1.9 178,422 - -1.5
Or see this region's nucleotide sequence