Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0172 and cysQ overlap by 4 nucleotides cysQ and Synpcc7942_0174 are separated by 39 nucleotides Synpcc7942_0174 and Synpcc7942_0175 overlap by 4 nucleotides Synpcc7942_0175 and Synpcc7942_0176 are separated by 112 nucleotides Synpcc7942_0176 and Synpcc7942_0177 overlap by 4 nucleotides
Synpcc7942_0172: Synpcc7942_0172 - hypothetical protein, at 171,912 to 172,205
_0172
Synpcc7942_0173: cysQ - 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase-like, at 172,202 to 173,071
cysQ
Synpcc7942_0174: Synpcc7942_0174 - hypothetical protein, at 173,111 to 173,989
_0174
Synpcc7942_0175: Synpcc7942_0175 - hypothetical protein, at 173,986 to 174,198
_0175
Synpcc7942_0176: Synpcc7942_0176 - hypothetical protein, at 174,311 to 174,712
_0176
Synpcc7942_0177: Synpcc7942_0177 - ABC-type uncharacterized transport system permease component-like, at 174,709 to 175,497
_0177
Position (kb) 173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 172.118 kb on - strand, within Synpcc7942_0172 at 172.204 kb on + strand at 172.212 kb on - strand at 172.222 kb on - strand at 172.239 kb on - strand at 172.243 kb on + strand at 172.296 kb on - strand, within cysQ at 172.310 kb on - strand, within cysQ at 172.323 kb on + strand, within cysQ at 172.323 kb on + strand, within cysQ at 172.323 kb on - strand, within cysQ at 172.334 kb on + strand, within cysQ at 172.360 kb on + strand, within cysQ at 172.360 kb on + strand, within cysQ at 172.368 kb on - strand, within cysQ at 172.406 kb on + strand, within cysQ at 172.426 kb on - strand, within cysQ at 172.438 kb on + strand, within cysQ at 172.472 kb on + strand, within cysQ at 172.477 kb on + strand, within cysQ at 172.477 kb on + strand, within cysQ at 172.485 kb on - strand, within cysQ at 172.612 kb on - strand, within cysQ at 172.625 kb on + strand, within cysQ at 172.625 kb on + strand, within cysQ at 172.625 kb on + strand, within cysQ at 172.625 kb on + strand at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand at 172.631 kb on + strand, within cysQ at 172.631 kb on + strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.639 kb on - strand, within cysQ at 172.666 kb on + strand, within cysQ at 172.698 kb on + strand, within cysQ at 172.704 kb on - strand, within cysQ at 172.733 kb on + strand, within cysQ at 172.776 kb on + strand, within cysQ at 172.808 kb on - strand, within cysQ at 172.813 kb on - strand, within cysQ at 172.813 kb on - strand at 172.815 kb on + strand, within cysQ at 172.830 kb on + strand, within cysQ at 172.953 kb on + strand, within cysQ at 172.953 kb on + strand, within cysQ at 172.953 kb on + strand, within cysQ at 172.953 kb on + strand, within cysQ at 172.961 kb on - strand, within cysQ at 172.961 kb on - strand, within cysQ at 172.961 kb on - strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.968 kb on + strand, within cysQ at 172.973 kb on + strand, within cysQ at 172.976 kb on - strand, within cysQ at 172.976 kb on - strand, within cysQ at 172.976 kb on - strand, within cysQ at 172.976 kb on - strand, within cysQ at 172.976 kb on - strand, within cysQ at 172.989 kb on - strand at 173.016 kb on - strand at 173.039 kb on - strand at 173.062 kb on - strand at 173.062 kb on - strand at 173.066 kb on + strand at 173.071 kb on - strand at 173.075 kb on + strand at 173.075 kb on + strand at 173.075 kb on + strand at 173.083 kb on - strand at 173.084 kb on - strand at 173.084 kb on - strand at 173.101 kb on + strand at 173.102 kb on - strand at 173.109 kb on - strand at 173.109 kb on - strand at 173.109 kb on - strand at 173.109 kb on - strand at 173.118 kb on + strand at 173.119 kb on + strand at 173.132 kb on - strand at 173.134 kb on + strand at 173.164 kb on + strand at 173.172 kb on - strand at 173.205 kb on + strand, within Synpcc7942_0174 at 173.205 kb on + strand, within Synpcc7942_0174 at 173.205 kb on + strand, within Synpcc7942_0174 at 173.213 kb on - strand, within Synpcc7942_0174 at 173.222 kb on + strand, within Synpcc7942_0174 at 173.259 kb on - strand, within Synpcc7942_0174 at 173.275 kb on + strand, within Synpcc7942_0174 at 173.275 kb on + strand, within Synpcc7942_0174 at 173.301 kb on + strand, within Synpcc7942_0174 at 173.301 kb on + strand, within Synpcc7942_0174 at 173.301 kb on + strand, within Synpcc7942_0174 at 173.309 kb on - strand, within Synpcc7942_0174 at 173.309 kb on - strand, within Synpcc7942_0174 at 173.311 kb on - strand, within Synpcc7942_0174 at 173.311 kb on - strand, within Synpcc7942_0174 at 173.316 kb on + strand, within Synpcc7942_0174 at 173.319 kb on - strand, within Synpcc7942_0174 at 173.324 kb on - strand, within Synpcc7942_0174 at 173.345 kb on + strand, within Synpcc7942_0174 at 173.345 kb on + strand, within Synpcc7942_0174 at 173.345 kb on + strand, within Synpcc7942_0174 at 173.345 kb on + strand, within Synpcc7942_0174 at 173.353 kb on - strand, within Synpcc7942_0174 at 173.353 kb on - strand, within Synpcc7942_0174 at 173.353 kb on - strand, within Synpcc7942_0174 at 173.357 kb on + strand, within Synpcc7942_0174 at 173.357 kb on + strand, within Synpcc7942_0174 at 173.370 kb on - strand, within Synpcc7942_0174 at 173.432 kb on + strand, within Synpcc7942_0174 at 173.433 kb on + strand, within Synpcc7942_0174 at 173.441 kb on - strand, within Synpcc7942_0174 at 173.441 kb on - strand, within Synpcc7942_0174 at 173.467 kb on + strand, within Synpcc7942_0174 at 173.472 kb on + strand, within Synpcc7942_0174 at 173.479 kb on + strand, within Synpcc7942_0174 at 173.479 kb on + strand, within Synpcc7942_0174 at 173.479 kb on + strand, within Synpcc7942_0174 at 173.479 kb on + strand, within Synpcc7942_0174 at 173.479 kb on + strand, within Synpcc7942_0174 at 173.479 kb on + strand, within Synpcc7942_0174 at 173.487 kb on - strand, within Synpcc7942_0174 at 173.487 kb on - strand, within Synpcc7942_0174 at 173.495 kb on - strand, within Synpcc7942_0174 at 173.495 kb on - strand, within Synpcc7942_0174 at 173.534 kb on + strand, within Synpcc7942_0174 at 173.593 kb on + strand, within Synpcc7942_0174 at 173.597 kb on + strand, within Synpcc7942_0174 at 173.610 kb on + strand, within Synpcc7942_0174 at 173.628 kb on + strand, within Synpcc7942_0174 at 173.628 kb on + strand, within Synpcc7942_0174 at 173.672 kb on + strand, within Synpcc7942_0174 at 173.672 kb on + strand, within Synpcc7942_0174 at 173.672 kb on + strand, within Synpcc7942_0174 at 173.672 kb on + strand, within Synpcc7942_0174 at 173.680 kb on - strand, within Synpcc7942_0174 at 173.715 kb on + strand, within Synpcc7942_0174 at 173.790 kb on + strand, within Synpcc7942_0174 at 173.790 kb on + strand, within Synpcc7942_0174 at 173.807 kb on + strand, within Synpcc7942_0174 at 173.813 kb on - strand, within Synpcc7942_0174 at 173.825 kb on - strand, within Synpcc7942_0174 at 173.846 kb on - strand, within Synpcc7942_0174 at 173.871 kb on + strand, within Synpcc7942_0174 at 173.873 kb on + strand, within Synpcc7942_0174 at 173.905 kb on - strand at 173.960 kb on + strand at 174.191 kb on + strand at 174.217 kb on - strand at 174.219 kb on + strand at 174.230 kb on + strand at 174.230 kb on + strand at 174.336 kb on - strand at 174.362 kb on - strand, within Synpcc7942_0176 at 174.377 kb on - strand, within Synpcc7942_0176 at 174.398 kb on + strand, within Synpcc7942_0176 at 174.422 kb on - strand, within Synpcc7942_0176 at 174.444 kb on + strand, within Synpcc7942_0176 at 174.449 kb on + strand, within Synpcc7942_0176 at 174.521 kb on + strand, within Synpcc7942_0176 at 174.533 kb on - strand, within Synpcc7942_0176 at 174.540 kb on + strand, within Synpcc7942_0176 at 174.554 kb on + strand, within Synpcc7942_0176 at 174.556 kb on - strand, within Synpcc7942_0176 at 174.575 kb on + strand, within Synpcc7942_0176 at 174.625 kb on + strand, within Synpcc7942_0176 at 174.626 kb on + strand, within Synpcc7942_0176 at 174.637 kb on + strand, within Synpcc7942_0176 at 174.664 kb on - strand, within Synpcc7942_0176 at 174.666 kb on + strand, within Synpcc7942_0176 at 174.666 kb on + strand, within Synpcc7942_0176 at 174.671 kb on + strand at 174.671 kb on + strand, within Synpcc7942_0176 at 174.679 kb on - strand at 174.679 kb on - strand at 174.730 kb on - strand at 174.767 kb on + strand at 174.788 kb on - strand, within Synpcc7942_0177 at 174.812 kb on - strand, within Synpcc7942_0177 at 174.812 kb on - strand, within Synpcc7942_0177 at 174.812 kb on - strand, within Synpcc7942_0177 at 174.832 kb on - strand, within Synpcc7942_0177 at 174.832 kb on - strand, within Synpcc7942_0177 at 174.860 kb on + strand, within Synpcc7942_0177 at 174.873 kb on - strand, within Synpcc7942_0177 at 174.903 kb on - strand, within Synpcc7942_0177 at 174.910 kb on + strand, within Synpcc7942_0177 at 174.916 kb on + strand, within Synpcc7942_0177 at 174.944 kb on + strand, within Synpcc7942_0177 at 174.956 kb on + strand, within Synpcc7942_0177 at 174.964 kb on - strand, within Synpcc7942_0177 at 174.964 kb on - strand, within Synpcc7942_0177 at 174.964 kb on - strand, within Synpcc7942_0177 at 174.966 kb on + strand, within Synpcc7942_0177 at 174.974 kb on + strand, within Synpcc7942_0177 at 174.982 kb on - strand, within Synpcc7942_0177
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 172,118 - Synpcc7942_0172 0.70 +1.6 172,204 + +0.9 172,212 - -0.8 172,222 - -2.5 172,239 - -1.5 172,243 + -0.2 172,296 - cysQ Synpcc7942_0173 0.11 -1.8 172,310 - cysQ Synpcc7942_0173 0.12 +1.7 172,323 + cysQ Synpcc7942_0173 0.14 -3.1 172,323 + cysQ Synpcc7942_0173 0.14 -2.9 172,323 - cysQ Synpcc7942_0173 0.14 +0.5 172,334 + cysQ Synpcc7942_0173 0.15 +0.5 172,360 + cysQ Synpcc7942_0173 0.18 +0.5 172,360 + cysQ Synpcc7942_0173 0.18 -1.8 172,368 - cysQ Synpcc7942_0173 0.19 +0.5 172,406 + cysQ Synpcc7942_0173 0.23 -1.1 172,426 - cysQ Synpcc7942_0173 0.26 +1.5 172,438 + cysQ Synpcc7942_0173 0.27 +1.5 172,472 + cysQ Synpcc7942_0173 0.31 -0.2 172,477 + cysQ Synpcc7942_0173 0.32 -1.1 172,477 + cysQ Synpcc7942_0173 0.32 +1.8 172,485 - cysQ Synpcc7942_0173 0.33 +0.5 172,612 - cysQ Synpcc7942_0173 0.47 +4.4 172,625 + cysQ Synpcc7942_0173 0.49 -1.1 172,625 + cysQ Synpcc7942_0173 0.49 -0.7 172,625 + cysQ Synpcc7942_0173 0.49 +1.8 172,625 + -1.5 172,631 + cysQ Synpcc7942_0173 0.49 -1.1 172,631 + cysQ Synpcc7942_0173 0.49 -1.1 172,631 + cysQ Synpcc7942_0173 0.49 -0.5 172,631 + cysQ Synpcc7942_0173 0.49 -0.5 172,631 + cysQ Synpcc7942_0173 0.49 -0.6 172,631 + cysQ Synpcc7942_0173 0.49 -1.5 172,631 + +0.5 172,631 + cysQ Synpcc7942_0173 0.49 -1.5 172,631 + cysQ Synpcc7942_0173 0.49 +0.3 172,639 - cysQ Synpcc7942_0173 0.50 +0.5 172,639 - cysQ Synpcc7942_0173 0.50 -0.2 172,639 - cysQ Synpcc7942_0173 0.50 -1.7 172,639 - cysQ Synpcc7942_0173 0.50 -0.5 172,639 - cysQ Synpcc7942_0173 0.50 -2.2 172,639 - cysQ Synpcc7942_0173 0.50 -0.5 172,639 - cysQ Synpcc7942_0173 0.50 -2.3 172,639 - cysQ Synpcc7942_0173 0.50 +0.5 172,639 - cysQ Synpcc7942_0173 0.50 +1.2 172,666 + cysQ Synpcc7942_0173 0.53 +3.1 172,698 + cysQ Synpcc7942_0173 0.57 -0.5 172,704 - cysQ Synpcc7942_0173 0.58 -2.3 172,733 + cysQ Synpcc7942_0173 0.61 -1.5 172,776 + cysQ Synpcc7942_0173 0.66 -0.7 172,808 - cysQ Synpcc7942_0173 0.70 +3.6 172,813 - cysQ Synpcc7942_0173 0.70 +0.5 172,813 - +0.5 172,815 + cysQ Synpcc7942_0173 0.70 -0.3 172,830 + cysQ Synpcc7942_0173 0.72 -2.3 172,953 + cysQ Synpcc7942_0173 0.86 +1.5 172,953 + cysQ Synpcc7942_0173 0.86 +5.4 172,953 + cysQ Synpcc7942_0173 0.86 -0.7 172,953 + cysQ Synpcc7942_0173 0.86 +2.9 172,961 - cysQ Synpcc7942_0173 0.87 -0.2 172,961 - cysQ Synpcc7942_0173 0.87 -1.8 172,961 - cysQ Synpcc7942_0173 0.87 -0.5 172,968 + cysQ Synpcc7942_0173 0.88 +1.1 172,968 + cysQ Synpcc7942_0173 0.88 +0.3 172,968 + cysQ Synpcc7942_0173 0.88 -0.7 172,968 + cysQ Synpcc7942_0173 0.88 -0.5 172,968 + cysQ Synpcc7942_0173 0.88 -0.5 172,968 + cysQ Synpcc7942_0173 0.88 +1.5 172,968 + cysQ Synpcc7942_0173 0.88 -1.7 172,973 + cysQ Synpcc7942_0173 0.89 -1.1 172,976 - cysQ Synpcc7942_0173 0.89 +2.6 172,976 - cysQ Synpcc7942_0173 0.89 -1.5 172,976 - cysQ Synpcc7942_0173 0.89 -2.9 172,976 - cysQ Synpcc7942_0173 0.89 -0.7 172,976 - cysQ Synpcc7942_0173 0.89 -0.2 172,989 - +1.5 173,016 - -1.5 173,039 - +0.3 173,062 - +1.2 173,062 - -2.4 173,066 + +0.8 173,071 - -0.2 173,075 + +0.9 173,075 + -0.1 173,075 + +0.5 173,083 - +1.6 173,084 - -1.1 173,084 - +0.0 173,101 + -2.1 173,102 - +1.5 173,109 - +0.3 173,109 - +2.8 173,109 - +0.9 173,109 - -1.8 173,118 + -1.8 173,119 + -2.1 173,132 - +0.9 173,134 + +0.0 173,164 + +0.9 173,172 - -1.2 173,205 + Synpcc7942_0174 0.11 -1.5 173,205 + Synpcc7942_0174 0.11 -1.2 173,205 + Synpcc7942_0174 0.11 -2.1 173,213 - Synpcc7942_0174 0.12 +1.1 173,222 + Synpcc7942_0174 0.13 -1.4 173,259 - Synpcc7942_0174 0.17 -0.7 173,275 + Synpcc7942_0174 0.19 -1.7 173,275 + Synpcc7942_0174 0.19 -1.8 173,301 + Synpcc7942_0174 0.22 -1.1 173,301 + Synpcc7942_0174 0.22 -0.1 173,301 + Synpcc7942_0174 0.22 -0.7 173,309 - Synpcc7942_0174 0.23 +0.7 173,309 - Synpcc7942_0174 0.23 -0.5 173,311 - Synpcc7942_0174 0.23 -1.5 173,311 - Synpcc7942_0174 0.23 +1.5 173,316 + Synpcc7942_0174 0.23 -0.5 173,319 - Synpcc7942_0174 0.24 +0.5 173,324 - Synpcc7942_0174 0.24 -0.5 173,345 + Synpcc7942_0174 0.27 -1.2 173,345 + Synpcc7942_0174 0.27 +3.5 173,345 + Synpcc7942_0174 0.27 -2.3 173,345 + Synpcc7942_0174 0.27 -2.3 173,353 - Synpcc7942_0174 0.28 +1.0 173,353 - Synpcc7942_0174 0.28 -1.5 173,353 - Synpcc7942_0174 0.28 -2.5 173,357 + Synpcc7942_0174 0.28 +1.1 173,357 + Synpcc7942_0174 0.28 -1.1 173,370 - Synpcc7942_0174 0.29 -1.2 173,432 + Synpcc7942_0174 0.37 -2.0 173,433 + Synpcc7942_0174 0.37 -0.8 173,441 - Synpcc7942_0174 0.38 +0.5 173,441 - Synpcc7942_0174 0.38 -0.5 173,467 + Synpcc7942_0174 0.41 -1.5 173,472 + Synpcc7942_0174 0.41 -1.3 173,479 + Synpcc7942_0174 0.42 -2.5 173,479 + Synpcc7942_0174 0.42 +0.7 173,479 + Synpcc7942_0174 0.42 -0.5 173,479 + Synpcc7942_0174 0.42 -1.8 173,479 + Synpcc7942_0174 0.42 -1.8 173,479 + Synpcc7942_0174 0.42 -1.5 173,487 - Synpcc7942_0174 0.43 -0.5 173,487 - Synpcc7942_0174 0.43 -1.1 173,495 - Synpcc7942_0174 0.44 -1.8 173,495 - Synpcc7942_0174 0.44 +0.5 173,534 + Synpcc7942_0174 0.48 -1.1 173,593 + Synpcc7942_0174 0.55 +0.5 173,597 + Synpcc7942_0174 0.55 +0.5 173,610 + Synpcc7942_0174 0.57 -2.7 173,628 + Synpcc7942_0174 0.59 -1.1 173,628 + Synpcc7942_0174 0.59 -1.0 173,672 + Synpcc7942_0174 0.64 -0.4 173,672 + Synpcc7942_0174 0.64 -0.1 173,672 + Synpcc7942_0174 0.64 +0.5 173,672 + Synpcc7942_0174 0.64 -0.5 173,680 - Synpcc7942_0174 0.65 +0.5 173,715 + Synpcc7942_0174 0.69 -2.1 173,790 + Synpcc7942_0174 0.77 -1.7 173,790 + Synpcc7942_0174 0.77 +0.6 173,807 + Synpcc7942_0174 0.79 -1.1 173,813 - Synpcc7942_0174 0.80 +0.5 173,825 - Synpcc7942_0174 0.81 -0.5 173,846 - Synpcc7942_0174 0.84 -0.5 173,871 + Synpcc7942_0174 0.86 -0.0 173,873 + Synpcc7942_0174 0.87 +0.1 173,905 - -2.1 173,960 + -2.5 174,191 + -0.1 174,217 - -0.5 174,219 + -1.5 174,230 + -1.3 174,230 + +1.6 174,336 - +1.3 174,362 - Synpcc7942_0176 0.13 -0.4 174,377 - Synpcc7942_0176 0.16 +3.8 174,398 + Synpcc7942_0176 0.22 +1.8 174,422 - Synpcc7942_0176 0.28 -2.3 174,444 + Synpcc7942_0176 0.33 +1.1 174,449 + Synpcc7942_0176 0.34 -0.5 174,521 + Synpcc7942_0176 0.52 +1.0 174,533 - Synpcc7942_0176 0.55 +1.7 174,540 + Synpcc7942_0176 0.57 +1.5 174,554 + Synpcc7942_0176 0.60 +0.5 174,556 - Synpcc7942_0176 0.61 +2.1 174,575 + Synpcc7942_0176 0.66 -0.5 174,625 + Synpcc7942_0176 0.78 -3.4 174,626 + Synpcc7942_0176 0.78 -0.1 174,637 + Synpcc7942_0176 0.81 +0.1 174,664 - Synpcc7942_0176 0.88 +1.8 174,666 + Synpcc7942_0176 0.88 +2.4 174,666 + Synpcc7942_0176 0.88 -0.2 174,671 + +3.9 174,671 + Synpcc7942_0176 0.90 +0.5 174,679 - +1.1 174,679 - +0.5 174,730 - -1.5 174,767 + +0.6 174,788 - Synpcc7942_0177 0.10 +0.3 174,812 - Synpcc7942_0177 0.13 +0.1 174,812 - Synpcc7942_0177 0.13 -0.5 174,812 - Synpcc7942_0177 0.13 -0.7 174,832 - Synpcc7942_0177 0.16 +0.2 174,832 - Synpcc7942_0177 0.16 +1.0 174,860 + Synpcc7942_0177 0.19 +0.2 174,873 - Synpcc7942_0177 0.21 +1.1 174,903 - Synpcc7942_0177 0.25 +1.5 174,910 + Synpcc7942_0177 0.25 -0.1 174,916 + Synpcc7942_0177 0.26 +0.5 174,944 + Synpcc7942_0177 0.30 +1.1 174,956 + Synpcc7942_0177 0.31 +0.8 174,964 - Synpcc7942_0177 0.32 +0.5 174,964 - Synpcc7942_0177 0.32 +1.7 174,964 - Synpcc7942_0177 0.32 -2.3 174,966 + Synpcc7942_0177 0.33 +1.2 174,974 + Synpcc7942_0177 0.34 -1.5 174,982 - Synpcc7942_0177 0.35 +0.3
Or see this region's nucleotide sequence