Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0132 and Synpcc7942_0133 are separated by 144 nucleotides Synpcc7942_0133 and Synpcc7942_0134 overlap by 10 nucleotides
Synpcc7942_0132: Synpcc7942_0132 - hypothetical protein, at 132,721 to 133,770
_0132
Synpcc7942_0133: Synpcc7942_0133 - hypothetical protein, at 133,915 to 134,754
_0133
Synpcc7942_0134: Synpcc7942_0134 - hypothetical protein, at 134,745 to 136,052
_0134
Position (kb) 133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.927 kb on + strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.949 kb on - strand at 132.956 kb on - strand, within Synpcc7942_0132 at 132.957 kb on - strand, within Synpcc7942_0132 at 132.972 kb on - strand, within Synpcc7942_0132 at 132.998 kb on + strand, within Synpcc7942_0132 at 133.006 kb on - strand, within Synpcc7942_0132 at 133.006 kb on - strand at 133.006 kb on - strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.016 kb on - strand, within Synpcc7942_0132 at 133.026 kb on - strand at 133.034 kb on + strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.109 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.156 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.190 kb on + strand at 133.198 kb on - strand, within Synpcc7942_0132 at 133.212 kb on + strand, within Synpcc7942_0132 at 133.212 kb on - strand, within Synpcc7942_0132 at 133.228 kb on + strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.248 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.258 kb on + strand, within Synpcc7942_0132 at 133.266 kb on + strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.291 kb on - strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.307 kb on + strand, within Synpcc7942_0132 at 133.308 kb on - strand, within Synpcc7942_0132 at 133.317 kb on - strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.339 kb on - strand, within Synpcc7942_0132 at 133.375 kb on - strand, within Synpcc7942_0132 at 133.381 kb on - strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.401 kb on - strand, within Synpcc7942_0132 at 133.435 kb on + strand, within Synpcc7942_0132 at 133.461 kb on - strand, within Synpcc7942_0132 at 133.481 kb on - strand, within Synpcc7942_0132 at 133.487 kb on + strand, within Synpcc7942_0132 at 133.564 kb on + strand, within Synpcc7942_0132 at 133.570 kb on + strand, within Synpcc7942_0132 at 133.571 kb on + strand, within Synpcc7942_0132 at 133.579 kb on - strand, within Synpcc7942_0132 at 133.579 kb on - strand, within Synpcc7942_0132 at 133.651 kb on - strand at 133.651 kb on - strand, within Synpcc7942_0132 at 133.666 kb on + strand at 133.666 kb on + strand at 133.666 kb on + strand at 133.666 kb on + strand at 133.684 kb on - strand at 133.709 kb on - strand at 133.713 kb on + strand at 133.713 kb on + strand at 133.713 kb on + strand at 133.713 kb on + strand at 133.714 kb on - strand at 133.716 kb on - strand at 133.730 kb on - strand at 133.743 kb on + strand at 133.751 kb on - strand at 133.760 kb on + strand at 133.786 kb on + strand at 133.786 kb on + strand at 133.794 kb on - strand at 133.794 kb on - strand at 133.816 kb on + strand at 133.824 kb on - strand at 133.833 kb on - strand at 133.854 kb on - strand at 133.854 kb on - strand at 133.889 kb on + strand at 133.897 kb on - strand at 133.897 kb on - strand at 133.897 kb on - strand at 133.897 kb on - strand at 133.918 kb on - strand at 133.923 kb on - strand at 133.941 kb on - strand at 134.072 kb on + strand, within Synpcc7942_0133 at 134.072 kb on + strand, within Synpcc7942_0133 at 134.072 kb on + strand, within Synpcc7942_0133 at 134.080 kb on - strand, within Synpcc7942_0133 at 134.080 kb on - strand, within Synpcc7942_0133 at 134.108 kb on + strand, within Synpcc7942_0133 at 134.114 kb on - strand, within Synpcc7942_0133 at 134.114 kb on - strand, within Synpcc7942_0133 at 134.116 kb on + strand, within Synpcc7942_0133 at 134.116 kb on + strand, within Synpcc7942_0133 at 134.116 kb on + strand, within Synpcc7942_0133 at 134.118 kb on + strand, within Synpcc7942_0133 at 134.126 kb on - strand, within Synpcc7942_0133 at 134.126 kb on - strand, within Synpcc7942_0133 at 134.132 kb on + strand, within Synpcc7942_0133 at 134.184 kb on - strand, within Synpcc7942_0133 at 134.184 kb on - strand, within Synpcc7942_0133 at 134.184 kb on - strand, within Synpcc7942_0133 at 134.185 kb on - strand, within Synpcc7942_0133 at 134.200 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.218 kb on - strand, within Synpcc7942_0133 at 134.243 kb on + strand, within Synpcc7942_0133 at 134.253 kb on + strand at 134.261 kb on - strand, within Synpcc7942_0133 at 134.261 kb on - strand, within Synpcc7942_0133 at 134.261 kb on - strand, within Synpcc7942_0133 at 134.282 kb on + strand, within Synpcc7942_0133 at 134.290 kb on - strand, within Synpcc7942_0133 at 134.301 kb on + strand, within Synpcc7942_0133 at 134.330 kb on + strand, within Synpcc7942_0133 at 134.330 kb on + strand, within Synpcc7942_0133 at 134.342 kb on + strand, within Synpcc7942_0133 at 134.342 kb on + strand, within Synpcc7942_0133 at 134.342 kb on + strand, within Synpcc7942_0133 at 134.386 kb on - strand, within Synpcc7942_0133 at 134.387 kb on - strand, within Synpcc7942_0133 at 134.429 kb on - strand, within Synpcc7942_0133 at 134.472 kb on + strand, within Synpcc7942_0133 at 134.472 kb on + strand, within Synpcc7942_0133 at 134.472 kb on + strand, within Synpcc7942_0133 at 134.480 kb on - strand, within Synpcc7942_0133 at 134.480 kb on - strand, within Synpcc7942_0133 at 134.500 kb on - strand, within Synpcc7942_0133 at 134.515 kb on + strand, within Synpcc7942_0133 at 134.523 kb on - strand, within Synpcc7942_0133 at 134.523 kb on - strand, within Synpcc7942_0133 at 134.528 kb on - strand, within Synpcc7942_0133 at 134.549 kb on + strand, within Synpcc7942_0133 at 134.549 kb on + strand, within Synpcc7942_0133 at 134.549 kb on + strand, within Synpcc7942_0133 at 134.549 kb on - strand, within Synpcc7942_0133 at 134.557 kb on - strand, within Synpcc7942_0133 at 134.557 kb on - strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.583 kb on + strand, within Synpcc7942_0133 at 134.583 kb on + strand, within Synpcc7942_0133 at 134.591 kb on - strand at 134.591 kb on - strand, within Synpcc7942_0133 at 134.595 kb on + strand, within Synpcc7942_0133 at 134.676 kb on + strand at 134.676 kb on - strand at 134.698 kb on + strand at 134.698 kb on + strand at 134.699 kb on + strand at 134.705 kb on - strand at 134.706 kb on - strand at 134.706 kb on - strand at 134.707 kb on - strand at 134.707 kb on - strand at 134.707 kb on - strand at 134.756 kb on - strand at 134.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 132,915 - Synpcc7942_0132 0.18 -0.1 132,915 - Synpcc7942_0132 0.18 -2.8 132,916 - Synpcc7942_0132 0.19 +0.1 132,916 - Synpcc7942_0132 0.19 -0.5 132,916 - Synpcc7942_0132 0.19 +5.7 132,927 + Synpcc7942_0132 0.20 -1.1 132,935 - Synpcc7942_0132 0.20 -3.5 132,935 - Synpcc7942_0132 0.20 -2.5 132,935 - Synpcc7942_0132 0.20 -0.5 132,935 - Synpcc7942_0132 0.20 +2.1 132,949 - -2.1 132,956 - Synpcc7942_0132 0.22 +0.5 132,957 - Synpcc7942_0132 0.22 -3.5 132,972 - Synpcc7942_0132 0.24 +2.1 132,998 + Synpcc7942_0132 0.26 +1.5 133,006 - Synpcc7942_0132 0.27 -1.8 133,006 - +0.5 133,006 - Synpcc7942_0132 0.27 +0.6 133,008 + Synpcc7942_0132 0.27 -2.3 133,008 + Synpcc7942_0132 0.27 +0.3 133,016 - Synpcc7942_0132 0.28 +2.2 133,026 - -0.5 133,034 + Synpcc7942_0132 0.30 +0.2 133,041 - Synpcc7942_0132 0.30 +0.5 133,041 - Synpcc7942_0132 0.30 -1.8 133,048 + Synpcc7942_0132 0.31 +0.2 133,048 + Synpcc7942_0132 0.31 +2.7 133,101 + Synpcc7942_0132 0.36 -0.8 133,101 + Synpcc7942_0132 0.36 +1.1 133,109 - Synpcc7942_0132 0.37 +0.5 133,120 - Synpcc7942_0132 0.38 +2.5 133,120 - Synpcc7942_0132 0.38 +0.2 133,148 + Synpcc7942_0132 0.41 -0.3 133,148 + Synpcc7942_0132 0.41 +1.1 133,148 + Synpcc7942_0132 0.41 +1.5 133,156 - Synpcc7942_0132 0.41 +2.0 133,166 - Synpcc7942_0132 0.42 +1.5 133,166 - Synpcc7942_0132 0.42 +0.2 133,190 + -1.8 133,198 - Synpcc7942_0132 0.45 +1.1 133,212 + Synpcc7942_0132 0.47 -0.6 133,212 - Synpcc7942_0132 0.47 +1.1 133,228 + Synpcc7942_0132 0.48 -0.4 133,236 - Synpcc7942_0132 0.49 -0.3 133,236 - Synpcc7942_0132 0.49 +0.5 133,248 + Synpcc7942_0132 0.50 -1.5 133,257 + Synpcc7942_0132 0.51 -2.7 133,257 + Synpcc7942_0132 0.51 -1.4 133,257 + Synpcc7942_0132 0.51 -2.5 133,258 + Synpcc7942_0132 0.51 +1.5 133,266 + Synpcc7942_0132 0.52 -2.3 133,267 - Synpcc7942_0132 0.52 +2.3 133,267 - Synpcc7942_0132 0.52 +0.9 133,269 - Synpcc7942_0132 0.52 +1.0 133,269 - Synpcc7942_0132 0.52 -0.1 133,269 - Synpcc7942_0132 0.52 -1.8 133,283 + Synpcc7942_0132 0.54 +0.5 133,283 + Synpcc7942_0132 0.54 +0.7 133,291 - Synpcc7942_0132 0.54 -2.7 133,293 + Synpcc7942_0132 0.54 +0.3 133,293 + Synpcc7942_0132 0.54 -0.5 133,307 + Synpcc7942_0132 0.56 -0.5 133,308 - Synpcc7942_0132 0.56 +0.5 133,317 - Synpcc7942_0132 0.57 +0.5 133,321 + Synpcc7942_0132 0.57 +0.4 133,321 + Synpcc7942_0132 0.57 +0.4 133,329 - Synpcc7942_0132 0.58 -2.4 133,329 - Synpcc7942_0132 0.58 +1.5 133,339 - Synpcc7942_0132 0.59 +0.1 133,375 - Synpcc7942_0132 0.62 +2.8 133,381 - Synpcc7942_0132 0.63 -0.5 133,386 + Synpcc7942_0132 0.63 -1.5 133,386 + Synpcc7942_0132 0.63 -1.8 133,394 - Synpcc7942_0132 0.64 +0.2 133,394 - Synpcc7942_0132 0.64 -0.1 133,394 - Synpcc7942_0132 0.64 -0.5 133,394 - Synpcc7942_0132 0.64 -0.5 133,401 - Synpcc7942_0132 0.65 -0.5 133,435 + Synpcc7942_0132 0.68 +3.6 133,461 - Synpcc7942_0132 0.70 -0.3 133,481 - Synpcc7942_0132 0.72 +0.8 133,487 + Synpcc7942_0132 0.73 -1.5 133,564 + Synpcc7942_0132 0.80 -0.9 133,570 + Synpcc7942_0132 0.81 -0.0 133,571 + Synpcc7942_0132 0.81 -1.8 133,579 - Synpcc7942_0132 0.82 +1.1 133,579 - Synpcc7942_0132 0.82 -0.5 133,651 - +2.6 133,651 - Synpcc7942_0132 0.89 -0.8 133,666 + +3.2 133,666 + +0.9 133,666 + -0.6 133,666 + +1.6 133,684 - +0.0 133,709 - -2.1 133,713 + +1.7 133,713 + -0.6 133,713 + +0.5 133,713 + +0.8 133,714 - +2.7 133,716 - -0.8 133,730 - -1.1 133,743 + +0.7 133,751 - +0.5 133,760 + -1.8 133,786 + -0.1 133,786 + +2.1 133,794 - +1.2 133,794 - +0.7 133,816 + -0.8 133,824 - +0.4 133,833 - +1.1 133,854 - +0.5 133,854 - -2.3 133,889 + -4.4 133,897 - +1.5 133,897 - +1.4 133,897 - -0.5 133,897 - +1.5 133,918 - +0.1 133,923 - -1.1 133,941 - +1.5 134,072 + Synpcc7942_0133 0.19 +3.5 134,072 + Synpcc7942_0133 0.19 +0.2 134,072 + Synpcc7942_0133 0.19 -1.5 134,080 - Synpcc7942_0133 0.20 +0.9 134,080 - Synpcc7942_0133 0.20 -0.3 134,108 + Synpcc7942_0133 0.23 -2.1 134,114 - Synpcc7942_0133 0.24 +0.5 134,114 - Synpcc7942_0133 0.24 +2.1 134,116 + Synpcc7942_0133 0.24 -1.5 134,116 + Synpcc7942_0133 0.24 -0.1 134,116 + Synpcc7942_0133 0.24 +1.5 134,118 + Synpcc7942_0133 0.24 -0.0 134,126 - Synpcc7942_0133 0.25 +0.1 134,126 - Synpcc7942_0133 0.25 +2.6 134,132 + Synpcc7942_0133 0.26 +3.6 134,184 - Synpcc7942_0133 0.32 -0.8 134,184 - Synpcc7942_0133 0.32 +0.0 134,184 - Synpcc7942_0133 0.32 -1.7 134,185 - Synpcc7942_0133 0.32 -1.1 134,200 + Synpcc7942_0133 0.34 -0.1 134,210 + Synpcc7942_0133 0.35 +1.5 134,210 + Synpcc7942_0133 0.35 +1.5 134,210 + Synpcc7942_0133 0.35 -0.1 134,210 + Synpcc7942_0133 0.35 -1.9 134,218 - Synpcc7942_0133 0.36 +2.3 134,243 + Synpcc7942_0133 0.39 +1.8 134,253 + +0.5 134,261 - Synpcc7942_0133 0.41 +0.7 134,261 - Synpcc7942_0133 0.41 +1.4 134,261 - Synpcc7942_0133 0.41 -2.1 134,282 + Synpcc7942_0133 0.44 +0.9 134,290 - Synpcc7942_0133 0.45 -1.8 134,301 + Synpcc7942_0133 0.46 +0.7 134,330 + Synpcc7942_0133 0.49 +3.1 134,330 + Synpcc7942_0133 0.49 +1.2 134,342 + Synpcc7942_0133 0.51 +1.9 134,342 + Synpcc7942_0133 0.51 -1.1 134,342 + Synpcc7942_0133 0.51 +2.2 134,386 - Synpcc7942_0133 0.56 -1.1 134,387 - Synpcc7942_0133 0.56 +0.5 134,429 - Synpcc7942_0133 0.61 +0.9 134,472 + Synpcc7942_0133 0.66 +1.1 134,472 + Synpcc7942_0133 0.66 -0.3 134,472 + Synpcc7942_0133 0.66 -1.5 134,480 - Synpcc7942_0133 0.67 +0.5 134,480 - Synpcc7942_0133 0.67 +4.3 134,500 - Synpcc7942_0133 0.70 +2.1 134,515 + Synpcc7942_0133 0.71 +0.5 134,523 - Synpcc7942_0133 0.72 +4.0 134,523 - Synpcc7942_0133 0.72 -0.0 134,528 - Synpcc7942_0133 0.73 -0.8 134,549 + Synpcc7942_0133 0.75 +0.5 134,549 + Synpcc7942_0133 0.75 +0.5 134,549 + Synpcc7942_0133 0.75 +1.1 134,549 - Synpcc7942_0133 0.75 +0.5 134,557 - Synpcc7942_0133 0.76 -3.7 134,557 - Synpcc7942_0133 0.76 +0.5 134,563 + Synpcc7942_0133 0.77 -2.9 134,563 + Synpcc7942_0133 0.77 -1.5 134,563 + Synpcc7942_0133 0.77 -0.3 134,563 + Synpcc7942_0133 0.77 +0.8 134,563 + Synpcc7942_0133 0.77 -1.1 134,571 - Synpcc7942_0133 0.78 +0.6 134,571 - Synpcc7942_0133 0.78 -2.4 134,571 - Synpcc7942_0133 0.78 +2.6 134,571 - Synpcc7942_0133 0.78 -0.5 134,571 - Synpcc7942_0133 0.78 -0.1 134,571 - Synpcc7942_0133 0.78 +0.9 134,571 - Synpcc7942_0133 0.78 +1.8 134,571 - Synpcc7942_0133 0.78 -2.1 134,571 - Synpcc7942_0133 0.78 -0.1 134,583 + Synpcc7942_0133 0.80 +1.7 134,583 + Synpcc7942_0133 0.80 +0.8 134,591 - +0.5 134,591 - Synpcc7942_0133 0.80 +0.3 134,595 + Synpcc7942_0133 0.81 +1.8 134,676 + +2.1 134,676 - +2.2 134,698 + +1.9 134,698 + +2.1 134,699 + -0.1 134,705 - +1.9 134,706 - +1.6 134,706 - +1.1 134,707 - +0.1 134,707 - +2.4 134,707 - +0.8 134,756 - +0.5 134,760 + -3.9
Or see this region's nucleotide sequence