Experiment: Rifampicin 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepP and Synpcc7942_0076 are separated by 2 nucleotides Synpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides Synpcc7942_0077 and Synpcc7942_0078 overlap by 4 nucleotides
Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088
pepP
Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852
_0076
Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617
_0077
Synpcc7942_0078: Synpcc7942_0078 - hypothetical protein, at 76,614 to 77,063
_0078
Position (kb) 75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 74.196 kb on + strand, within pepP at 74.240 kb on - strand, within pepP at 74.284 kb on - strand, within pepP at 74.345 kb on + strand, within pepP at 74.516 kb on - strand, within pepP at 74.637 kb on + strand, within pepP at 74.724 kb on + strand, within pepP at 74.755 kb on + strand, within pepP at 74.756 kb on + strand, within pepP at 74.833 kb on + strand, within pepP at 74.859 kb on + strand, within pepP at 74.924 kb on + strand, within pepP at 74.926 kb on + strand, within pepP at 74.934 kb on - strand, within pepP at 74.958 kb on - strand at 75.082 kb on - strand at 75.131 kb on + strand at 75.131 kb on + strand at 75.141 kb on + strand at 75.149 kb on - strand at 75.236 kb on + strand, within Synpcc7942_0076 at 75.236 kb on + strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.320 kb on + strand, within Synpcc7942_0076 at 75.328 kb on - strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.444 kb on - strand, within Synpcc7942_0076 at 75.446 kb on + strand at 75.446 kb on + strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.479 kb on - strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.534 kb on - strand at 75.534 kb on - strand, within Synpcc7942_0076 at 75.557 kb on - strand, within Synpcc7942_0076 at 75.693 kb on - strand, within Synpcc7942_0076 at 75.764 kb on - strand, within Synpcc7942_0076 at 75.791 kb on + strand at 75.799 kb on - strand at 75.799 kb on - strand at 75.996 kb on + strand at 75.999 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.085 kb on + strand, within Synpcc7942_0077 at 76.093 kb on - strand, within Synpcc7942_0077 at 76.215 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.248 kb on - strand, within Synpcc7942_0077 at 76.252 kb on - strand, within Synpcc7942_0077 at 76.306 kb on + strand, within Synpcc7942_0077 at 76.315 kb on - strand, within Synpcc7942_0077 at 76.319 kb on - strand, within Synpcc7942_0077 at 76.333 kb on - strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.342 kb on - strand, within Synpcc7942_0077 at 76.404 kb on + strand, within Synpcc7942_0077 at 76.419 kb on + strand, within Synpcc7942_0077 at 76.420 kb on + strand, within Synpcc7942_0077 at 76.422 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.566 kb on + strand at 76.574 kb on - strand at 76.619 kb on - strand at 76.626 kb on + strand at 76.640 kb on - strand at 76.674 kb on + strand, within Synpcc7942_0078 at 76.677 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.756 kb on - strand, within Synpcc7942_0078 at 76.770 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.783 kb on - strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.797 kb on + strand, within Synpcc7942_0078
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.000390625 mg/ml remove 74,196 + pepP Synpcc7942_0075 0.32 -1.1 74,240 - pepP Synpcc7942_0075 0.35 -4.1 74,284 - pepP Synpcc7942_0075 0.39 -1.8 74,345 + pepP Synpcc7942_0075 0.43 -1.5 74,516 - pepP Synpcc7942_0075 0.56 +0.5 74,637 + pepP Synpcc7942_0075 0.66 -1.8 74,724 + pepP Synpcc7942_0075 0.72 -2.1 74,755 + pepP Synpcc7942_0075 0.75 -1.8 74,756 + pepP Synpcc7942_0075 0.75 -1.8 74,833 + pepP Synpcc7942_0075 0.81 -1.8 74,859 + pepP Synpcc7942_0075 0.82 -1.8 74,924 + pepP Synpcc7942_0075 0.87 -1.1 74,926 + pepP Synpcc7942_0075 0.88 +0.5 74,934 - pepP Synpcc7942_0075 0.88 -1.1 74,958 - -4.1 75,082 - +0.5 75,131 + +1.9 75,131 + +1.0 75,141 + -1.5 75,149 - +0.8 75,236 + Synpcc7942_0076 0.19 -1.5 75,236 + Synpcc7942_0076 0.19 -0.1 75,244 - Synpcc7942_0076 0.20 -0.5 75,244 - Synpcc7942_0076 0.20 +4.2 75,244 - Synpcc7942_0076 0.20 -2.7 75,320 + Synpcc7942_0076 0.30 +3.0 75,328 - Synpcc7942_0076 0.31 -0.2 75,357 + Synpcc7942_0076 0.35 +1.7 75,357 + Synpcc7942_0076 0.35 -1.5 75,397 - Synpcc7942_0076 0.40 -1.3 75,397 - Synpcc7942_0076 0.40 -2.1 75,397 - Synpcc7942_0076 0.40 -1.1 75,436 + Synpcc7942_0076 0.45 +1.0 75,436 + Synpcc7942_0076 0.45 -1.8 75,444 - Synpcc7942_0076 0.46 -1.8 75,446 + +4.8 75,446 + Synpcc7942_0076 0.47 +1.1 75,454 - Synpcc7942_0076 0.48 -1.1 75,454 - Synpcc7942_0076 0.48 -0.9 75,479 - Synpcc7942_0076 0.51 -0.4 75,526 + Synpcc7942_0076 0.57 -1.1 75,526 + Synpcc7942_0076 0.57 -0.5 75,526 + Synpcc7942_0076 0.57 +0.5 75,534 - +1.5 75,534 - Synpcc7942_0076 0.58 -1.1 75,557 - Synpcc7942_0076 0.61 +2.1 75,693 - Synpcc7942_0076 0.79 -2.1 75,764 - Synpcc7942_0076 0.88 +0.1 75,791 + -0.9 75,799 - -1.5 75,799 - -0.1 75,996 + +0.8 75,999 - Synpcc7942_0077 0.10 +0.1 76,037 - Synpcc7942_0077 0.16 +2.5 76,037 - Synpcc7942_0077 0.16 +3.0 76,085 + Synpcc7942_0077 0.23 +1.5 76,093 - Synpcc7942_0077 0.24 +2.1 76,215 - Synpcc7942_0077 0.42 +3.4 76,243 - Synpcc7942_0077 0.46 +1.6 76,243 - Synpcc7942_0077 0.46 -0.9 76,243 - Synpcc7942_0077 0.46 +1.6 76,248 - Synpcc7942_0077 0.46 +1.6 76,252 - Synpcc7942_0077 0.47 +0.5 76,306 + Synpcc7942_0077 0.55 +3.0 76,315 - Synpcc7942_0077 0.56 -1.3 76,319 - Synpcc7942_0077 0.57 +0.5 76,333 - Synpcc7942_0077 0.59 +2.0 76,334 + Synpcc7942_0077 0.59 +2.7 76,334 + Synpcc7942_0077 0.59 -0.1 76,342 - Synpcc7942_0077 0.60 +0.9 76,404 + Synpcc7942_0077 0.69 +1.5 76,419 + Synpcc7942_0077 0.71 +0.5 76,420 + Synpcc7942_0077 0.71 -1.1 76,422 - Synpcc7942_0077 0.72 -3.0 76,497 - Synpcc7942_0077 0.82 +2.3 76,497 - Synpcc7942_0077 0.82 +1.8 76,532 - Synpcc7942_0077 0.88 -2.7 76,532 - Synpcc7942_0077 0.88 -0.3 76,566 + +2.2 76,574 - -1.1 76,619 - -2.3 76,626 + +1.5 76,640 - +1.1 76,674 + Synpcc7942_0078 0.13 +1.0 76,677 + Synpcc7942_0078 0.14 +0.6 76,743 + Synpcc7942_0078 0.29 -0.8 76,743 + Synpcc7942_0078 0.29 -1.5 76,743 + Synpcc7942_0078 0.29 -0.7 76,743 + Synpcc7942_0078 0.29 -2.3 76,743 + Synpcc7942_0078 0.29 +1.0 76,743 + Synpcc7942_0078 0.29 +1.5 76,743 + +2.5 76,743 + Synpcc7942_0078 0.29 +0.3 76,743 + Synpcc7942_0078 0.29 +1.1 76,751 - Synpcc7942_0078 0.30 +2.2 76,751 - Synpcc7942_0078 0.30 -1.8 76,751 - Synpcc7942_0078 0.30 -1.5 76,751 - Synpcc7942_0078 0.30 -1.7 76,751 - Synpcc7942_0078 0.30 +2.6 76,751 - Synpcc7942_0078 0.30 +1.1 76,751 - Synpcc7942_0078 0.30 +0.7 76,751 - Synpcc7942_0078 0.30 +3.2 76,756 - Synpcc7942_0078 0.32 -1.5 76,770 + Synpcc7942_0078 0.35 +0.8 76,775 + Synpcc7942_0078 0.36 +1.7 76,775 + Synpcc7942_0078 0.36 -1.1 76,775 + Synpcc7942_0078 0.36 +0.9 76,783 - Synpcc7942_0078 0.38 -0.8 76,796 + Synpcc7942_0078 0.40 +1.7 76,796 + Synpcc7942_0078 0.40 -1.5 76,797 + Synpcc7942_0078 0.41 -0.5
Or see this region's nucleotide sequence