Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0008

Experiment: Rifampicin 0.000390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.000390625 mg/ml
7,584	+				-1.8
7,595	-				+1.2
7,602	-				-1.5
7,604	+				+0.5
7,604	+				+0.5
7,604	+				+1.4
7,604	+				-0.9
7,612	-				-0.5
7,612	-				-1.5
7,612	-				+0.5
7,631	+				-1.4
7,655	+				+1.0
7,755	+				+0.5
7,758	-				+0.5
7,762	+				+3.4
7,762	+				+1.5
7,763	-				+1.2
7,764	+				-0.5
7,822	+		Synpcc7942_0006	0.10	-3.5
7,827	+		Synpcc7942_0006	0.12	-1.0
7,830	-		Synpcc7942_0006	0.12	-0.5
7,866	-		Synpcc7942_0006	0.21	+0.5
7,920	+		Synpcc7942_0006	0.34	-2.1
7,929	-		Synpcc7942_0006	0.36	-2.3
7,931	-		Synpcc7942_0006	0.37	-0.3
7,931	-		Synpcc7942_0006	0.37	-2.1
7,931	-		Synpcc7942_0006	0.37	-1.6
7,931	-		Synpcc7942_0006	0.37	-4.1
7,955	+		Synpcc7942_0006	0.43	-2.2
7,955	+		Synpcc7942_0006	0.43	-2.7
7,980	+		Synpcc7942_0006	0.49	-1.1
8,003	+		Synpcc7942_0006	0.54	-2.9
8,011	-		Synpcc7942_0006	0.56	-0.5
8,011	-		Synpcc7942_0006	0.56	+2.0
8,011	-		Synpcc7942_0006	0.56	-1.8
8,014	-		Synpcc7942_0006	0.57	+0.5
8,026	+		Synpcc7942_0006	0.60	-1.8
8,052	+		Synpcc7942_0006	0.66	-1.5
8,053	-		Synpcc7942_0006	0.66	-3.4
8,078	-		Synpcc7942_0006	0.72	-3.9
8,080	+		Synpcc7942_0006	0.73	-3.1
8,097	-		Synpcc7942_0006	0.77	-3.2
8,122	+		Synpcc7942_0006	0.83	-2.3
8,132	+		Synpcc7942_0006	0.85	-4.1
8,135	-		Synpcc7942_0006	0.86	-3.3
8,140	-		Synpcc7942_0006	0.87	-1.8
8,150	-		Synpcc7942_0006	0.90	-1.1
8,208	+				-0.9
8,216	-				-1.4
8,219	-				+0.6
8,267	+		Synpcc7942_0007	0.22	-3.4
8,292	+		Synpcc7942_0007	0.29	-2.5
8,292	+		Synpcc7942_0007	0.29	-1.9
8,292	+		Synpcc7942_0007	0.29	-1.6
8,292	+		Synpcc7942_0007	0.29	-3.5
8,298	+		Synpcc7942_0007	0.31	-1.1
8,320	-		Synpcc7942_0007	0.37	-1.8
8,320	-		Synpcc7942_0007	0.37	-1.8
8,320	-		Synpcc7942_0007	0.37	-1.4
8,320	-		Synpcc7942_0007	0.37	-1.1
8,346	+		Synpcc7942_0007	0.45	-1.7
8,354	-		Synpcc7942_0007	0.47	-1.8
8,357	-		Synpcc7942_0007	0.48	-2.1
8,405	-		Synpcc7942_0007	0.62	-2.3
8,410	+		Synpcc7942_0007	0.63	-2.4
8,410	+		Synpcc7942_0007	0.63	-2.5
8,423	+		Synpcc7942_0007	0.67	-2.3
8,440	+		Synpcc7942_0007	0.72	-1.5
8,448	-		Synpcc7942_0007	0.74	-1.5
8,458	-		Synpcc7942_0007	0.77	-2.6
8,460	+		Synpcc7942_0007	0.77	-1.1
8,468	-		Synpcc7942_0007	0.79	-1.4
8,490	-		Synpcc7942_0007	0.86	-0.7
8,501	+		Synpcc7942_0007	0.89	-1.8
8,501	+		Synpcc7942_0007	0.89	-1.8
8,508	-				-3.1
8,511	+				-0.6
8,532	+				+1.2
8,534	+				+1.5
8,544	-				+0.4
8,564	+				-1.7
8,567	+				-0.1
8,572	-		Synpcc7942_0008	0.11	-0.5
8,643	+		Synpcc7942_0008	0.33	-3.4
8,643	+		Synpcc7942_0008	0.33	-2.7
8,643	+		Synpcc7942_0008	0.33	-2.5
8,643	+		Synpcc7942_0008	0.33	-1.5
8,651	-		Synpcc7942_0008	0.35	+0.5
8,651	-		Synpcc7942_0008	0.35	-2.7
8,669	-		Synpcc7942_0008	0.41	-4.4
8,696	-		Synpcc7942_0008	0.49	+0.5
8,710	+		Synpcc7942_0008	0.54	-2.1
8,715	+		Synpcc7942_0008	0.55	-3.4
8,715	+		Synpcc7942_0008	0.55	-3.4
8,718	-		Synpcc7942_0008	0.56	-2.7
8,720	+		Synpcc7942_0008	0.57	-3.9
8,720	+		Synpcc7942_0008	0.57	-1.8
8,720	+		Synpcc7942_0008	0.57	+0.5
8,720	+		Synpcc7942_0008	0.57	-1.1
8,728	-		Synpcc7942_0008	0.59	-3.1
8,728	-		Synpcc7942_0008	0.59	-1.5
8,728	-		Synpcc7942_0008	0.59	-0.8
8,738	+		Synpcc7942_0008	0.62	-1.1
8,783	+		Synpcc7942_0008	0.76	+0.3
8,801	+		Synpcc7942_0008	0.82	-3.2
8,801	+		Synpcc7942_0008	0.82	-1.8
8,801	+		Synpcc7942_0008	0.82	-0.9
8,806	+		Synpcc7942_0008	0.83	-3.2
8,809	-		Synpcc7942_0008	0.84	+0.5
8,809	-		Synpcc7942_0008	0.84	-2.9
8,809	-		Synpcc7942_0008	0.84	-2.8
8,809	-		Synpcc7942_0008	0.84	-3.1
8,809	-		Synpcc7942_0008	0.84	-1.3
8,846	+				-2.0
8,859	+				-0.5
8,868	+				-0.5
8,881	-				-0.2
8,897	+				-0.5
8,903	+				+1.8
8,905	-				-1.1