Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4484

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4482 and Pf1N1B4_4483 are separated by 104 nucleotidesPf1N1B4_4483 and Pf1N1B4_4484 are separated by 183 nucleotidesPf1N1B4_4484 and Pf1N1B4_4485 are separated by 9 nucleotides Pf1N1B4_4482 - FIG146518: Zn-dependent hydrolases, including glyoxylases, at 4,943,549 to 4,944,412 _4482 Pf1N1B4_4483 - Transcriptional regulator, ArsR family, at 4,944,517 to 4,944,852 _4483 Pf1N1B4_4484 - FIG002984: FAD-dependent pyridine nucleotide-disulphide oxidoreductase, at 4,945,036 to 4,946,280 _4484 Pf1N1B4_4485 - membrane protein, putative, at 4,946,290 to 4,947,096 _4485 Position (kb) 4945 4946 4947Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4944.303 kb on + strand, within Pf1N1B4_4482at 4944.351 kb on + strandat 4944.352 kb on - strandat 4944.360 kb on + strandat 4944.360 kb on + strandat 4944.360 kb on + strandat 4944.360 kb on + strandat 4944.361 kb on - strandat 4944.366 kb on + strandat 4944.367 kb on - strandat 4944.367 kb on - strandat 4944.465 kb on + strandat 4944.465 kb on + strandat 4944.466 kb on - strandat 4944.735 kb on - strand, within Pf1N1B4_4483at 4944.757 kb on + strand, within Pf1N1B4_4483at 4944.757 kb on + strand, within Pf1N1B4_4483at 4944.757 kb on + strand, within Pf1N1B4_4483at 4944.758 kb on - strand, within Pf1N1B4_4483at 4944.758 kb on - strandat 4944.758 kb on - strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.761 kb on + strand, within Pf1N1B4_4483at 4944.762 kb on - strand, within Pf1N1B4_4483at 4944.766 kb on + strand, within Pf1N1B4_4483at 4944.766 kb on + strand, within Pf1N1B4_4483at 4944.767 kb on - strand, within Pf1N1B4_4483at 4944.820 kb on + strandat 4944.821 kb on - strandat 4944.977 kb on + strandat 4945.021 kb on - strandat 4945.083 kb on - strandat 4945.085 kb on + strandat 4945.086 kb on - strandat 4945.180 kb on + strand, within Pf1N1B4_4484at 4945.180 kb on + strand, within Pf1N1B4_4484at 4945.180 kb on + strand, within Pf1N1B4_4484at 4945.184 kb on - strand, within Pf1N1B4_4484at 4945.220 kb on - strand, within Pf1N1B4_4484at 4945.220 kb on - strand, within Pf1N1B4_4484at 4945.447 kb on + strand, within Pf1N1B4_4484at 4945.448 kb on - strand, within Pf1N1B4_4484at 4945.448 kb on - strand, within Pf1N1B4_4484at 4945.468 kb on + strand, within Pf1N1B4_4484at 4945.469 kb on - strand, within Pf1N1B4_4484at 4945.567 kb on + strand, within Pf1N1B4_4484at 4945.568 kb on - strand, within Pf1N1B4_4484at 4945.568 kb on - strandat 4945.568 kb on - strand, within Pf1N1B4_4484at 4945.568 kb on - strand, within Pf1N1B4_4484at 4945.685 kb on - strand, within Pf1N1B4_4484at 4945.797 kb on - strand, within Pf1N1B4_4484at 4945.927 kb on + strand, within Pf1N1B4_4484at 4946.012 kb on + strand, within Pf1N1B4_4484at 4946.062 kb on + strand, within Pf1N1B4_4484at 4946.062 kb on + strand, within Pf1N1B4_4484at 4946.289 kb on + strandat 4946.289 kb on + strandat 4946.289 kb on + strandat 4946.548 kb on + strand, within Pf1N1B4_4485at 4946.548 kb on + strand, within Pf1N1B4_4485at 4946.548 kb on + strand, within Pf1N1B4_4485at 4947.194 kb on - strandat 4947.194 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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4,944,303 + Pf1N1B4_4482 0.87 -1.6
4,944,351 + -0.0
4,944,352 - -2.4
4,944,360 + -1.6
4,944,360 + -2.6
4,944,360 + -1.6
4,944,360 + -2.9
4,944,361 - -1.0
4,944,366 + -1.0
4,944,367 - -2.4
4,944,367 - -2.0
4,944,465 + -0.0
4,944,465 + +2.0
4,944,466 - -0.8
4,944,735 - Pf1N1B4_4483 0.65 -0.0
4,944,757 + Pf1N1B4_4483 0.71 +0.3
4,944,757 + Pf1N1B4_4483 0.71 +1.8
4,944,757 + Pf1N1B4_4483 0.71 +1.4
4,944,758 - Pf1N1B4_4483 0.72 -0.0
4,944,758 - -0.0
4,944,758 - Pf1N1B4_4483 0.72 -0.0
4,944,761 + Pf1N1B4_4483 0.73 +1.3
4,944,761 + Pf1N1B4_4483 0.73 +1.6
4,944,761 + Pf1N1B4_4483 0.73 +1.3
4,944,761 + Pf1N1B4_4483 0.73 +0.8
4,944,761 + Pf1N1B4_4483 0.73 +2.0
4,944,761 + Pf1N1B4_4483 0.73 +1.3
4,944,761 + Pf1N1B4_4483 0.73 +0.4
4,944,762 - Pf1N1B4_4483 0.73 -2.0
4,944,766 + Pf1N1B4_4483 0.74 +2.1
4,944,766 + Pf1N1B4_4483 0.74 +2.0
4,944,767 - Pf1N1B4_4483 0.74 -1.4
4,944,820 + +0.5
4,944,821 - +1.5
4,944,977 + +1.5
4,945,021 - -1.5
4,945,083 - -0.0
4,945,085 + -0.6
4,945,086 - -1.9
4,945,180 + Pf1N1B4_4484 0.12 -0.9
4,945,180 + Pf1N1B4_4484 0.12 -1.6
4,945,180 + Pf1N1B4_4484 0.12 -2.4
4,945,184 - Pf1N1B4_4484 0.12 -2.9
4,945,220 - Pf1N1B4_4484 0.15 -0.6
4,945,220 - Pf1N1B4_4484 0.15 -1.6
4,945,447 + Pf1N1B4_4484 0.33 -0.1
4,945,448 - Pf1N1B4_4484 0.33 -0.1
4,945,448 - Pf1N1B4_4484 0.33 -1.5
4,945,468 + Pf1N1B4_4484 0.35 -0.1
4,945,469 - Pf1N1B4_4484 0.35 -2.9
4,945,567 + Pf1N1B4_4484 0.43 -1.6
4,945,568 - Pf1N1B4_4484 0.43 -2.1
4,945,568 - -0.1
4,945,568 - Pf1N1B4_4484 0.43 -2.4
4,945,568 - Pf1N1B4_4484 0.43 -1.1
4,945,685 - Pf1N1B4_4484 0.52 -0.1
4,945,797 - Pf1N1B4_4484 0.61 -0.5
4,945,927 + Pf1N1B4_4484 0.72 -2.4
4,946,012 + Pf1N1B4_4484 0.78 +2.3
4,946,062 + Pf1N1B4_4484 0.82 -0.1
4,946,062 + Pf1N1B4_4484 0.82 -1.1
4,946,289 + -0.1
4,946,289 + -1.1
4,946,289 + -0.1
4,946,548 + Pf1N1B4_4485 0.32 -1.1
4,946,548 + Pf1N1B4_4485 0.32 +0.4
4,946,548 + Pf1N1B4_4485 0.32 -3.1
4,947,194 - -0.1
4,947,194 - +0.4

Or see this region's nucleotide sequence