Experiment: Formate deepwell acetate and vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00660 and MMP_RS00665 are separated by 9 nucleotides MMP_RS00665 and MMP_RS00670 are separated by 33 nucleotides MMP_RS00670 and MMP_RS00675 are separated by 168 nucleotides
MMP_RS00660: MMP_RS00660 - alkaline phosphatase family protein, at 120,542 to 121,822
_RS00660
MMP_RS00665: MMP_RS00665 - hypothetical protein, at 121,832 to 122,641
_RS00665
MMP_RS00670: MMP_RS00670 - TIM barrel protein, at 122,675 to 123,331
_RS00670
MMP_RS00675: MMP_RS00675 - nitroreductase family protein, at 123,500 to 124,021
_RS00675
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-1
0
1 at 120.905 kb on + strand, within MMP_RS00660 at 121.108 kb on - strand, within MMP_RS00660 at 121.129 kb on - strand, within MMP_RS00660 at 121.370 kb on - strand, within MMP_RS00660 at 121.406 kb on - strand, within MMP_RS00660 at 121.449 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.483 kb on - strand, within MMP_RS00660 at 121.548 kb on - strand, within MMP_RS00660 at 121.916 kb on + strand, within MMP_RS00665 at 122.121 kb on - strand, within MMP_RS00665 at 122.121 kb on - strand, within MMP_RS00665 at 122.237 kb on - strand, within MMP_RS00665 at 122.443 kb on - strand, within MMP_RS00665 at 122.596 kb on - strand at 122.600 kb on - strand at 122.607 kb on + strand at 122.615 kb on + strand at 122.651 kb on - strand at 122.651 kb on - strand at 122.652 kb on + strand at 122.655 kb on - strand at 122.661 kb on + strand at 122.666 kb on - strand at 122.667 kb on + strand at 122.671 kb on - strand at 122.698 kb on - strand at 122.699 kb on + strand at 122.853 kb on - strand, within MMP_RS00670 at 122.857 kb on - strand, within MMP_RS00670 at 122.927 kb on - strand, within MMP_RS00670 at 122.972 kb on - strand, within MMP_RS00670 at 123.364 kb on - strand at 123.414 kb on - strand at 123.416 kb on - strand at 123.446 kb on - strand at 123.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE remove 120,905 + MMP_RS00660 0.28 +0.9 121,108 - MMP_RS00660 0.44 -0.1 121,129 - MMP_RS00660 0.46 +0.1 121,370 - MMP_RS00660 0.65 -0.1 121,406 - MMP_RS00660 0.67 +0.6 121,449 + MMP_RS00660 0.71 -0.1 121,478 + MMP_RS00660 0.73 -0.1 121,478 + MMP_RS00660 0.73 +0.6 121,483 - MMP_RS00660 0.73 -0.2 121,548 - MMP_RS00660 0.79 +0.2 121,916 + MMP_RS00665 0.10 +0.7 122,121 - MMP_RS00665 0.36 +0.4 122,121 - MMP_RS00665 0.36 +0.1 122,237 - MMP_RS00665 0.50 +0.6 122,443 - MMP_RS00665 0.75 -0.0 122,596 - +0.0 122,600 - +0.4 122,607 + +0.3 122,615 + +0.1 122,651 - +0.6 122,651 - -0.3 122,652 + +0.3 122,655 - +0.4 122,661 + -0.3 122,666 - +0.5 122,667 + +0.4 122,671 - +0.2 122,698 - +0.1 122,699 + -0.4 122,853 - MMP_RS00670 0.27 -0.0 122,857 - MMP_RS00670 0.28 +0.1 122,927 - MMP_RS00670 0.38 +0.4 122,972 - MMP_RS00670 0.45 +0.2 123,364 - +0.4 123,414 - +0.4 123,416 - +0.3 123,446 - +0.4 123,466 - -0.0
Or see this region's nucleotide sequence