Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23525 and BWI76_RS23530 are separated by 80 nucleotides BWI76_RS23530 and BWI76_RS23535 are separated by 83 nucleotides BWI76_RS23535 and BWI76_RS23540 are separated by 149 nucleotides
BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429
_RS23525
BWI76_RS23530: BWI76_RS23530 - MarR family transcriptional regulator, at 4,908,510 to 4,909,016
_RS23530
BWI76_RS23535: BWI76_RS23535 - hypothetical protein, at 4,909,100 to 4,909,561
_RS23535
BWI76_RS23540: BWI76_RS23540 - putative lysine exporter protein, at 4,909,711 to 4,910,322
_RS23540
Position (kb)
4908
4909
4910 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4907.526 kb on + strand at 4907.534 kb on - strand at 4907.597 kb on + strand at 4907.753 kb on + strand, within BWI76_RS23525 at 4907.792 kb on - strand, within BWI76_RS23525 at 4907.792 kb on - strand, within BWI76_RS23525 at 4907.796 kb on - strand, within BWI76_RS23525 at 4907.819 kb on - strand, within BWI76_RS23525 at 4907.999 kb on - strand, within BWI76_RS23525 at 4908.128 kb on + strand, within BWI76_RS23525 at 4908.193 kb on - strand, within BWI76_RS23525 at 4908.522 kb on + strand at 4908.525 kb on - strand at 4908.527 kb on + strand at 4908.630 kb on - strand, within BWI76_RS23530 at 4908.742 kb on - strand, within BWI76_RS23530 at 4908.880 kb on + strand, within BWI76_RS23530 at 4908.987 kb on + strand at 4909.019 kb on - strand at 4909.091 kb on + strand at 4909.099 kb on - strand at 4909.161 kb on - strand, within BWI76_RS23535 at 4909.193 kb on - strand, within BWI76_RS23535 at 4909.247 kb on - strand, within BWI76_RS23535 at 4909.692 kb on + strand at 4909.705 kb on - strand at 4909.705 kb on - strand at 4909.705 kb on - strand at 4909.783 kb on + strand, within BWI76_RS23540 at 4910.010 kb on - strand, within BWI76_RS23540
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 4,907,526 + +1.7 4,907,534 - -0.1 4,907,597 + +0.9 4,907,753 + BWI76_RS23525 0.24 -0.4 4,907,792 - BWI76_RS23525 0.28 +0.1 4,907,792 - BWI76_RS23525 0.28 -0.0 4,907,796 - BWI76_RS23525 0.29 -0.6 4,907,819 - BWI76_RS23525 0.31 -0.3 4,907,999 - BWI76_RS23525 0.52 +0.4 4,908,128 + BWI76_RS23525 0.66 -0.2 4,908,193 - BWI76_RS23525 0.73 -0.6 4,908,522 + -0.6 4,908,525 - +0.7 4,908,527 + +0.1 4,908,630 - BWI76_RS23530 0.24 -0.3 4,908,742 - BWI76_RS23530 0.46 -1.5 4,908,880 + BWI76_RS23530 0.73 -0.5 4,908,987 + -0.2 4,909,019 - +0.3 4,909,091 + +1.1 4,909,099 - -0.6 4,909,161 - BWI76_RS23535 0.13 -0.5 4,909,193 - BWI76_RS23535 0.20 -0.2 4,909,247 - BWI76_RS23535 0.32 +1.1 4,909,692 + +0.1 4,909,705 - -0.0 4,909,705 - -0.4 4,909,705 - +2.1 4,909,783 + BWI76_RS23540 0.12 -0.5 4,910,010 - BWI76_RS23540 0.49 -1.8
Or see this region's nucleotide sequence