Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22065 and BWI76_RS22070 overlap by 8 nucleotides BWI76_RS22070 and BWI76_RS22075 are separated by 62 nucleotides
BWI76_RS22065: BWI76_RS22065 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 4,606,430 to 4,607,632
_RS22065
BWI76_RS22070: BWI76_RS22070 - proline/betaine ABC transporter permease ProW, at 4,607,625 to 4,608,689
_RS22070
BWI76_RS22075: BWI76_RS22075 - glycine betaine ABC transporter substrate-binding protein, at 4,608,752 to 4,609,747
_RS22075
Position (kb)
4607
4608
4609 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4606.668 kb on - strand, within BWI76_RS22065 at 4606.681 kb on + strand, within BWI76_RS22065 at 4606.770 kb on + strand, within BWI76_RS22065 at 4606.786 kb on + strand, within BWI76_RS22065 at 4606.794 kb on - strand, within BWI76_RS22065 at 4606.794 kb on - strand, within BWI76_RS22065 at 4606.794 kb on - strand, within BWI76_RS22065 at 4606.823 kb on + strand, within BWI76_RS22065 at 4606.823 kb on + strand, within BWI76_RS22065 at 4606.826 kb on - strand, within BWI76_RS22065 at 4606.826 kb on - strand, within BWI76_RS22065 at 4606.831 kb on - strand, within BWI76_RS22065 at 4606.863 kb on - strand, within BWI76_RS22065 at 4606.876 kb on + strand, within BWI76_RS22065 at 4606.906 kb on + strand, within BWI76_RS22065 at 4606.914 kb on - strand, within BWI76_RS22065 at 4606.922 kb on + strand, within BWI76_RS22065 at 4606.924 kb on + strand, within BWI76_RS22065 at 4606.924 kb on + strand, within BWI76_RS22065 at 4606.932 kb on - strand, within BWI76_RS22065 at 4606.932 kb on - strand, within BWI76_RS22065 at 4606.932 kb on - strand, within BWI76_RS22065 at 4606.932 kb on - strand, within BWI76_RS22065 at 4606.940 kb on - strand, within BWI76_RS22065 at 4606.944 kb on + strand, within BWI76_RS22065 at 4606.945 kb on + strand, within BWI76_RS22065 at 4606.949 kb on + strand, within BWI76_RS22065 at 4606.949 kb on + strand, within BWI76_RS22065 at 4606.949 kb on + strand, within BWI76_RS22065 at 4606.949 kb on + strand, within BWI76_RS22065 at 4606.949 kb on + strand, within BWI76_RS22065 at 4606.949 kb on + strand, within BWI76_RS22065 at 4606.952 kb on - strand, within BWI76_RS22065 at 4606.952 kb on - strand, within BWI76_RS22065 at 4606.952 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand, within BWI76_RS22065 at 4606.957 kb on - strand at 4606.985 kb on - strand, within BWI76_RS22065 at 4606.994 kb on + strand, within BWI76_RS22065 at 4606.994 kb on + strand, within BWI76_RS22065 at 4607.002 kb on - strand, within BWI76_RS22065 at 4607.007 kb on - strand, within BWI76_RS22065 at 4607.017 kb on - strand, within BWI76_RS22065 at 4607.017 kb on - strand, within BWI76_RS22065 at 4607.027 kb on - strand, within BWI76_RS22065 at 4607.100 kb on + strand, within BWI76_RS22065 at 4607.104 kb on + strand, within BWI76_RS22065 at 4607.108 kb on - strand, within BWI76_RS22065 at 4607.112 kb on - strand, within BWI76_RS22065 at 4607.119 kb on - strand, within BWI76_RS22065 at 4607.148 kb on + strand, within BWI76_RS22065 at 4607.148 kb on + strand, within BWI76_RS22065 at 4607.159 kb on + strand, within BWI76_RS22065 at 4607.159 kb on + strand, within BWI76_RS22065 at 4607.167 kb on - strand, within BWI76_RS22065 at 4607.172 kb on - strand, within BWI76_RS22065 at 4607.240 kb on + strand, within BWI76_RS22065 at 4607.240 kb on + strand, within BWI76_RS22065 at 4607.256 kb on - strand, within BWI76_RS22065 at 4607.269 kb on - strand, within BWI76_RS22065 at 4607.277 kb on + strand, within BWI76_RS22065 at 4607.280 kb on + strand, within BWI76_RS22065 at 4607.285 kb on + strand, within BWI76_RS22065 at 4607.315 kb on - strand, within BWI76_RS22065 at 4607.369 kb on + strand, within BWI76_RS22065 at 4607.394 kb on + strand, within BWI76_RS22065 at 4607.418 kb on + strand, within BWI76_RS22065 at 4607.428 kb on + strand, within BWI76_RS22065 at 4607.428 kb on + strand, within BWI76_RS22065 at 4607.428 kb on + strand, within BWI76_RS22065 at 4607.428 kb on + strand, within BWI76_RS22065 at 4607.428 kb on + strand, within BWI76_RS22065 at 4607.428 kb on + strand, within BWI76_RS22065 at 4607.431 kb on - strand, within BWI76_RS22065 at 4607.436 kb on - strand, within BWI76_RS22065 at 4607.436 kb on - strand, within BWI76_RS22065 at 4607.436 kb on - strand, within BWI76_RS22065 at 4607.453 kb on + strand, within BWI76_RS22065 at 4607.453 kb on + strand, within BWI76_RS22065 at 4607.461 kb on - strand, within BWI76_RS22065 at 4607.461 kb on - strand, within BWI76_RS22065 at 4607.461 kb on - strand, within BWI76_RS22065 at 4607.461 kb on - strand, within BWI76_RS22065 at 4607.466 kb on + strand, within BWI76_RS22065 at 4607.473 kb on + strand, within BWI76_RS22065 at 4607.481 kb on - strand, within BWI76_RS22065 at 4607.509 kb on + strand, within BWI76_RS22065 at 4607.515 kb on + strand at 4607.520 kb on + strand at 4607.520 kb on + strand at 4607.528 kb on - strand at 4607.528 kb on - strand at 4607.601 kb on - strand at 4607.601 kb on - strand at 4607.621 kb on + strand at 4607.653 kb on - strand at 4607.696 kb on + strand at 4607.701 kb on + strand at 4607.709 kb on - strand at 4607.709 kb on - strand at 4607.710 kb on - strand at 4607.904 kb on - strand, within BWI76_RS22070 at 4608.001 kb on - strand, within BWI76_RS22070 at 4608.183 kb on + strand, within BWI76_RS22070 at 4608.196 kb on - strand, within BWI76_RS22070 at 4608.220 kb on + strand, within BWI76_RS22070 at 4608.388 kb on - strand, within BWI76_RS22070 at 4608.655 kb on + strand at 4608.840 kb on + strand at 4608.843 kb on - strand at 4608.916 kb on + strand, within BWI76_RS22075 at 4608.968 kb on - strand, within BWI76_RS22075 at 4609.027 kb on + strand, within BWI76_RS22075 at 4609.129 kb on + strand, within BWI76_RS22075 at 4609.229 kb on + strand, within BWI76_RS22075 at 4609.287 kb on - strand, within BWI76_RS22075 at 4609.439 kb on + strand, within BWI76_RS22075 at 4609.458 kb on - strand, within BWI76_RS22075 at 4609.538 kb on + strand, within BWI76_RS22075 at 4609.551 kb on - strand, within BWI76_RS22075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 4,606,668 - BWI76_RS22065 0.20 +0.1 4,606,681 + BWI76_RS22065 0.21 -0.2 4,606,770 + BWI76_RS22065 0.28 +0.6 4,606,786 + BWI76_RS22065 0.30 -0.4 4,606,794 - BWI76_RS22065 0.30 +0.4 4,606,794 - BWI76_RS22065 0.30 -0.2 4,606,794 - BWI76_RS22065 0.30 +1.1 4,606,823 + BWI76_RS22065 0.33 +0.1 4,606,823 + BWI76_RS22065 0.33 -0.5 4,606,826 - BWI76_RS22065 0.33 -0.0 4,606,826 - BWI76_RS22065 0.33 -0.3 4,606,831 - BWI76_RS22065 0.33 +0.9 4,606,863 - BWI76_RS22065 0.36 -1.0 4,606,876 + BWI76_RS22065 0.37 -0.1 4,606,906 + BWI76_RS22065 0.40 -0.2 4,606,914 - BWI76_RS22065 0.40 -0.3 4,606,922 + BWI76_RS22065 0.41 -0.8 4,606,924 + BWI76_RS22065 0.41 +0.1 4,606,924 + BWI76_RS22065 0.41 -0.0 4,606,932 - BWI76_RS22065 0.42 +0.2 4,606,932 - BWI76_RS22065 0.42 -0.2 4,606,932 - BWI76_RS22065 0.42 -0.6 4,606,932 - BWI76_RS22065 0.42 -0.1 4,606,940 - BWI76_RS22065 0.42 -1.3 4,606,944 + BWI76_RS22065 0.43 -0.2 4,606,945 + BWI76_RS22065 0.43 +0.3 4,606,949 + BWI76_RS22065 0.43 +0.0 4,606,949 + BWI76_RS22065 0.43 -0.3 4,606,949 + BWI76_RS22065 0.43 +0.4 4,606,949 + BWI76_RS22065 0.43 +0.0 4,606,949 + BWI76_RS22065 0.43 -0.4 4,606,949 + BWI76_RS22065 0.43 +0.4 4,606,952 - BWI76_RS22065 0.43 +0.4 4,606,952 - BWI76_RS22065 0.43 -0.4 4,606,952 - BWI76_RS22065 0.43 -0.5 4,606,957 - BWI76_RS22065 0.44 -0.3 4,606,957 - BWI76_RS22065 0.44 -0.7 4,606,957 - BWI76_RS22065 0.44 -0.4 4,606,957 - BWI76_RS22065 0.44 +0.8 4,606,957 - BWI76_RS22065 0.44 -0.5 4,606,957 - BWI76_RS22065 0.44 -0.2 4,606,957 - BWI76_RS22065 0.44 -0.8 4,606,957 - +0.8 4,606,985 - BWI76_RS22065 0.46 +0.5 4,606,994 + BWI76_RS22065 0.47 +1.5 4,606,994 + BWI76_RS22065 0.47 -0.3 4,607,002 - BWI76_RS22065 0.48 -0.2 4,607,007 - BWI76_RS22065 0.48 +1.3 4,607,017 - BWI76_RS22065 0.49 -0.1 4,607,017 - BWI76_RS22065 0.49 -0.4 4,607,027 - BWI76_RS22065 0.50 -0.0 4,607,100 + BWI76_RS22065 0.56 +0.1 4,607,104 + BWI76_RS22065 0.56 -0.2 4,607,108 - BWI76_RS22065 0.56 -0.2 4,607,112 - BWI76_RS22065 0.57 -0.9 4,607,119 - BWI76_RS22065 0.57 -0.1 4,607,148 + BWI76_RS22065 0.60 -0.1 4,607,148 + BWI76_RS22065 0.60 +0.1 4,607,159 + BWI76_RS22065 0.61 -0.3 4,607,159 + BWI76_RS22065 0.61 -0.3 4,607,167 - BWI76_RS22065 0.61 +0.1 4,607,172 - BWI76_RS22065 0.62 +0.4 4,607,240 + BWI76_RS22065 0.67 -1.6 4,607,240 + BWI76_RS22065 0.67 -2.0 4,607,256 - BWI76_RS22065 0.69 -1.4 4,607,269 - BWI76_RS22065 0.70 +0.0 4,607,277 + BWI76_RS22065 0.70 +1.6 4,607,280 + BWI76_RS22065 0.71 -1.3 4,607,285 + BWI76_RS22065 0.71 -0.3 4,607,315 - BWI76_RS22065 0.74 +0.0 4,607,369 + BWI76_RS22065 0.78 -0.0 4,607,394 + BWI76_RS22065 0.80 -0.2 4,607,418 + BWI76_RS22065 0.82 +0.8 4,607,428 + BWI76_RS22065 0.83 -0.7 4,607,428 + BWI76_RS22065 0.83 +0.2 4,607,428 + BWI76_RS22065 0.83 +0.4 4,607,428 + BWI76_RS22065 0.83 +0.1 4,607,428 + BWI76_RS22065 0.83 -0.2 4,607,428 + BWI76_RS22065 0.83 -1.0 4,607,431 - BWI76_RS22065 0.83 +0.3 4,607,436 - BWI76_RS22065 0.84 +0.6 4,607,436 - BWI76_RS22065 0.84 +0.3 4,607,436 - BWI76_RS22065 0.84 +2.1 4,607,453 + BWI76_RS22065 0.85 -0.5 4,607,453 + BWI76_RS22065 0.85 -0.0 4,607,461 - BWI76_RS22065 0.86 -0.1 4,607,461 - BWI76_RS22065 0.86 +0.8 4,607,461 - BWI76_RS22065 0.86 -0.0 4,607,461 - BWI76_RS22065 0.86 +0.3 4,607,466 + BWI76_RS22065 0.86 +0.6 4,607,473 + BWI76_RS22065 0.87 +0.5 4,607,481 - BWI76_RS22065 0.87 +0.3 4,607,509 + BWI76_RS22065 0.90 -0.3 4,607,515 + -0.2 4,607,520 + -0.2 4,607,520 + +0.1 4,607,528 - +0.3 4,607,528 - -0.2 4,607,601 - -1.1 4,607,601 - -0.8 4,607,621 + -0.2 4,607,653 - -0.4 4,607,696 + -0.6 4,607,701 + -0.5 4,607,709 - +0.7 4,607,709 - -0.2 4,607,710 - +0.6 4,607,904 - BWI76_RS22070 0.26 -0.9 4,608,001 - BWI76_RS22070 0.35 -1.3 4,608,183 + BWI76_RS22070 0.52 +0.1 4,608,196 - BWI76_RS22070 0.54 +0.1 4,608,220 + BWI76_RS22070 0.56 -2.9 4,608,388 - BWI76_RS22070 0.72 -0.9 4,608,655 + +1.1 4,608,840 + +1.0 4,608,843 - +1.4 4,608,916 + BWI76_RS22075 0.16 -1.9 4,608,968 - BWI76_RS22075 0.22 -0.3 4,609,027 + BWI76_RS22075 0.28 -0.1 4,609,129 + BWI76_RS22075 0.38 +0.2 4,609,229 + BWI76_RS22075 0.48 -0.3 4,609,287 - BWI76_RS22075 0.54 -0.0 4,609,439 + BWI76_RS22075 0.69 -0.2 4,609,458 - BWI76_RS22075 0.71 -0.3 4,609,538 + BWI76_RS22075 0.79 +1.9 4,609,551 - BWI76_RS22075 0.80 -0.1
Or see this region's nucleotide sequence