Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13210

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13205 and BWI76_RS13210 are separated by 276 nucleotidesBWI76_RS13210 and BWI76_RS13215 are separated by 295 nucleotides BWI76_RS13205: BWI76_RS13205 - hypothetical protein, at 2,755,433 to 2,756,224 _RS13205 BWI76_RS13210: BWI76_RS13210 - aldehyde dehydrogenase, at 2,756,501 to 2,757,940 _RS13210 BWI76_RS13215: BWI76_RS13215 - type I glyceraldehyde-3-phosphate dehydrogenase, at 2,758,236 to 2,759,234 _RS13215 Position (kb) 2756 2757 2758Strain fitness (log2 ratio) -1 0 1 2 3at 2755.662 kb on + strand, within BWI76_RS13205at 2755.757 kb on + strand, within BWI76_RS13205at 2755.899 kb on - strand, within BWI76_RS13205at 2755.915 kb on - strand, within BWI76_RS13205at 2755.951 kb on + strand, within BWI76_RS13205at 2756.542 kb on + strandat 2756.794 kb on + strand, within BWI76_RS13210at 2756.905 kb on - strand, within BWI76_RS13210at 2757.535 kb on + strand, within BWI76_RS13210at 2757.580 kb on - strand, within BWI76_RS13210at 2757.607 kb on + strand, within BWI76_RS13210at 2757.664 kb on + strand, within BWI76_RS13210at 2757.687 kb on + strand, within BWI76_RS13210at 2758.039 kb on - strandat 2758.087 kb on + strandat 2758.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,755,662 + BWI76_RS13205 0.29 +3.0
2,755,757 + BWI76_RS13205 0.41 +0.4
2,755,899 - BWI76_RS13205 0.59 -0.5
2,755,915 - BWI76_RS13205 0.61 -0.0
2,755,951 + BWI76_RS13205 0.65 -0.3
2,756,542 + +0.0
2,756,794 + BWI76_RS13210 0.20 -1.1
2,756,905 - BWI76_RS13210 0.28 -0.1
2,757,535 + BWI76_RS13210 0.72 +0.0
2,757,580 - BWI76_RS13210 0.75 -0.1
2,757,607 + BWI76_RS13210 0.77 -0.5
2,757,664 + BWI76_RS13210 0.81 -0.6
2,757,687 + BWI76_RS13210 0.82 -1.0
2,758,039 - +1.0
2,758,087 + +0.5
2,758,335 - +0.3

Or see this region's nucleotide sequence