Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12790

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12780 and BWI76_RS12785 overlap by 4 nucleotidesBWI76_RS12785 and BWI76_RS12790 are separated by 125 nucleotidesBWI76_RS12790 and BWI76_RS12795 are separated by 149 nucleotidesBWI76_RS12795 and BWI76_RS12800 are separated by 195 nucleotides BWI76_RS12780: BWI76_RS12780 - hypothetical protein, at 2,664,290 to 2,664,562 _RS12780 BWI76_RS12785: BWI76_RS12785 - heat-shock protein HslJ, at 2,664,559 to 2,664,999 _RS12785 BWI76_RS12790: BWI76_RS12790 - lactate dehydrogenase, at 2,665,125 to 2,666,114 _RS12790 BWI76_RS12795: BWI76_RS12795 - DedA family protein, at 2,666,264 to 2,666,761 _RS12795 BWI76_RS12800: BWI76_RS12800 - hypothetical protein, at 2,666,957 to 2,669,596 _RS12800 Position (kb) 2665 2666 2667Strain fitness (log2 ratio) -2 -1 0 1at 2664.127 kb on + strandat 2664.137 kb on + strandat 2664.137 kb on + strandat 2664.137 kb on - strandat 2664.138 kb on + strandat 2664.145 kb on - strandat 2664.152 kb on - strandat 2664.193 kb on + strandat 2664.220 kb on + strandat 2664.227 kb on + strandat 2664.235 kb on - strandat 2664.333 kb on - strand, within BWI76_RS12780at 2664.409 kb on + strand, within BWI76_RS12780at 2664.665 kb on - strand, within BWI76_RS12785at 2664.706 kb on + strand, within BWI76_RS12785at 2664.915 kb on + strand, within BWI76_RS12785at 2664.923 kb on - strand, within BWI76_RS12785at 2664.923 kb on - strand, within BWI76_RS12785at 2664.928 kb on - strand, within BWI76_RS12785at 2665.775 kb on + strand, within BWI76_RS12790at 2666.276 kb on + strandat 2666.481 kb on - strand, within BWI76_RS12795at 2666.612 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.794 kb on - strandat 2666.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,664,127 + +0.2
2,664,137 + -0.2
2,664,137 + -0.5
2,664,137 - +0.8
2,664,138 + +0.2
2,664,145 - -1.9
2,664,152 - +0.8
2,664,193 + +0.6
2,664,220 + +0.4
2,664,227 + +0.7
2,664,235 - -0.3
2,664,333 - BWI76_RS12780 0.16 -1.3
2,664,409 + BWI76_RS12780 0.44 +0.3
2,664,665 - BWI76_RS12785 0.24 -0.9
2,664,706 + BWI76_RS12785 0.33 +0.5
2,664,915 + BWI76_RS12785 0.81 -0.0
2,664,923 - BWI76_RS12785 0.83 +0.6
2,664,923 - BWI76_RS12785 0.83 -0.4
2,664,928 - BWI76_RS12785 0.84 -0.2
2,665,775 + BWI76_RS12790 0.66 -1.0
2,666,276 + +1.7
2,666,481 - BWI76_RS12795 0.44 -0.2
2,666,612 - BWI76_RS12795 0.70 -0.2
2,666,640 - BWI76_RS12795 0.76 +0.7
2,666,640 - BWI76_RS12795 0.76 -1.0
2,666,640 - BWI76_RS12795 0.76 +0.9
2,666,640 - BWI76_RS12795 0.76 -0.9
2,666,640 - BWI76_RS12795 0.76 +0.1
2,666,794 - +0.6
2,666,968 + -0.3

Or see this region's nucleotide sequence