Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12780 and BWI76_RS12785 overlap by 4 nucleotides BWI76_RS12785 and BWI76_RS12790 are separated by 125 nucleotides BWI76_RS12790 and BWI76_RS12795 are separated by 149 nucleotides BWI76_RS12795 and BWI76_RS12800 are separated by 195 nucleotides
BWI76_RS12780: BWI76_RS12780 - hypothetical protein, at 2,664,290 to 2,664,562
_RS12780
BWI76_RS12785: BWI76_RS12785 - heat-shock protein HslJ, at 2,664,559 to 2,664,999
_RS12785
BWI76_RS12790: BWI76_RS12790 - lactate dehydrogenase, at 2,665,125 to 2,666,114
_RS12790
BWI76_RS12795: BWI76_RS12795 - DedA family protein, at 2,666,264 to 2,666,761
_RS12795
BWI76_RS12800: BWI76_RS12800 - hypothetical protein, at 2,666,957 to 2,669,596
_RS12800
Position (kb)
2665
2666
2667 Strain fitness (log2 ratio)
-2
-1
0
1 at 2664.127 kb on + strand at 2664.137 kb on + strand at 2664.137 kb on + strand at 2664.137 kb on - strand at 2664.138 kb on + strand at 2664.145 kb on - strand at 2664.152 kb on - strand at 2664.193 kb on + strand at 2664.220 kb on + strand at 2664.227 kb on + strand at 2664.235 kb on - strand at 2664.333 kb on - strand, within BWI76_RS12780 at 2664.409 kb on + strand, within BWI76_RS12780 at 2664.665 kb on - strand, within BWI76_RS12785 at 2664.706 kb on + strand, within BWI76_RS12785 at 2664.915 kb on + strand, within BWI76_RS12785 at 2664.923 kb on - strand, within BWI76_RS12785 at 2664.923 kb on - strand, within BWI76_RS12785 at 2664.928 kb on - strand, within BWI76_RS12785 at 2665.775 kb on + strand, within BWI76_RS12790 at 2666.276 kb on + strand at 2666.481 kb on - strand, within BWI76_RS12795 at 2666.612 kb on - strand, within BWI76_RS12795 at 2666.640 kb on - strand, within BWI76_RS12795 at 2666.640 kb on - strand, within BWI76_RS12795 at 2666.640 kb on - strand, within BWI76_RS12795 at 2666.640 kb on - strand, within BWI76_RS12795 at 2666.640 kb on - strand, within BWI76_RS12795 at 2666.794 kb on - strand at 2666.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 2,664,127 + +0.2 2,664,137 + -0.2 2,664,137 + -0.5 2,664,137 - +0.8 2,664,138 + +0.2 2,664,145 - -1.9 2,664,152 - +0.8 2,664,193 + +0.6 2,664,220 + +0.4 2,664,227 + +0.7 2,664,235 - -0.3 2,664,333 - BWI76_RS12780 0.16 -1.3 2,664,409 + BWI76_RS12780 0.44 +0.3 2,664,665 - BWI76_RS12785 0.24 -0.9 2,664,706 + BWI76_RS12785 0.33 +0.5 2,664,915 + BWI76_RS12785 0.81 -0.0 2,664,923 - BWI76_RS12785 0.83 +0.6 2,664,923 - BWI76_RS12785 0.83 -0.4 2,664,928 - BWI76_RS12785 0.84 -0.2 2,665,775 + BWI76_RS12790 0.66 -1.0 2,666,276 + +1.7 2,666,481 - BWI76_RS12795 0.44 -0.2 2,666,612 - BWI76_RS12795 0.70 -0.2 2,666,640 - BWI76_RS12795 0.76 +0.7 2,666,640 - BWI76_RS12795 0.76 -1.0 2,666,640 - BWI76_RS12795 0.76 +0.9 2,666,640 - BWI76_RS12795 0.76 -0.9 2,666,640 - BWI76_RS12795 0.76 +0.1 2,666,794 - +0.6 2,666,968 + -0.3
Or see this region's nucleotide sequence