Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00670 and BWI76_RS00675 are separated by 137 nucleotides BWI76_RS00675 and BWI76_RS00680 overlap by 4 nucleotides
BWI76_RS00670: BWI76_RS00670 - Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) <small>(from data)</small>, at 136,978 to 137,808
_RS00670
BWI76_RS00675: BWI76_RS00675 - L-rhamnose isomerase (EC 5.3.1.14) <small>(from data)</small>, at 137,946 to 139,205
_RS00675
BWI76_RS00680: BWI76_RS00680 - Rhamnulokinase (EC 2.7.1.5) <small>(from data)</small>, at 139,202 to 140,668
_RS00680
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 136.997 kb on - strand at 136.997 kb on - strand at 137.015 kb on - strand at 137.016 kb on + strand at 137.072 kb on - strand, within BWI76_RS00670 at 137.148 kb on + strand, within BWI76_RS00670 at 137.324 kb on - strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.364 kb on - strand, within BWI76_RS00670 at 137.378 kb on - strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.535 kb on + strand, within BWI76_RS00670 at 137.640 kb on - strand, within BWI76_RS00670 at 137.770 kb on - strand at 137.778 kb on + strand at 137.808 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand at 137.950 kb on - strand at 138.134 kb on - strand, within BWI76_RS00675 at 138.184 kb on + strand, within BWI76_RS00675 at 138.193 kb on - strand, within BWI76_RS00675 at 138.211 kb on + strand, within BWI76_RS00675 at 138.225 kb on - strand, within BWI76_RS00675 at 138.375 kb on - strand, within BWI76_RS00675 at 138.501 kb on - strand, within BWI76_RS00675 at 138.501 kb on - strand, within BWI76_RS00675 at 138.530 kb on + strand, within BWI76_RS00675 at 138.543 kb on - strand, within BWI76_RS00675 at 138.543 kb on - strand, within BWI76_RS00675 at 138.563 kb on - strand, within BWI76_RS00675 at 138.715 kb on + strand, within BWI76_RS00675 at 138.723 kb on - strand, within BWI76_RS00675 at 138.738 kb on - strand, within BWI76_RS00675 at 138.757 kb on + strand, within BWI76_RS00675 at 138.767 kb on + strand, within BWI76_RS00675 at 138.767 kb on + strand at 138.775 kb on - strand, within BWI76_RS00675 at 138.775 kb on - strand, within BWI76_RS00675 at 138.775 kb on - strand, within BWI76_RS00675 at 138.821 kb on + strand, within BWI76_RS00675 at 138.973 kb on - strand, within BWI76_RS00675 at 138.973 kb on - strand, within BWI76_RS00675 at 138.998 kb on - strand, within BWI76_RS00675 at 139.031 kb on - strand, within BWI76_RS00675 at 139.130 kb on - strand at 139.186 kb on + strand at 139.228 kb on - strand at 139.238 kb on - strand at 139.276 kb on + strand at 139.385 kb on + strand, within BWI76_RS00680 at 139.436 kb on - strand, within BWI76_RS00680 at 139.438 kb on + strand, within BWI76_RS00680 at 139.530 kb on + strand, within BWI76_RS00680 at 139.540 kb on + strand, within BWI76_RS00680 at 139.565 kb on + strand, within BWI76_RS00680 at 139.836 kb on - strand, within BWI76_RS00680 at 140.084 kb on + strand, within BWI76_RS00680 at 140.181 kb on - strand, within BWI76_RS00680 at 140.190 kb on - strand, within BWI76_RS00680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 136,997 - -3.3 136,997 - -4.0 137,015 - -3.4 137,016 + -3.3 137,072 - BWI76_RS00670 0.11 -1.6 137,148 + BWI76_RS00670 0.20 -3.5 137,324 - BWI76_RS00670 0.42 -3.9 137,356 + BWI76_RS00670 0.45 -3.6 137,356 + BWI76_RS00670 0.45 -4.8 137,364 - BWI76_RS00670 0.46 -3.8 137,378 - BWI76_RS00670 0.48 -4.3 137,457 + BWI76_RS00670 0.58 -5.4 137,457 + BWI76_RS00670 0.58 -0.2 137,535 + BWI76_RS00670 0.67 -4.5 137,640 - BWI76_RS00670 0.80 -3.6 137,770 - -0.8 137,778 + -3.2 137,808 - -4.1 137,846 - -2.9 137,846 - +1.2 137,846 - -0.4 137,950 - -3.2 138,134 - BWI76_RS00675 0.15 -1.6 138,184 + BWI76_RS00675 0.19 -2.8 138,193 - BWI76_RS00675 0.20 -2.1 138,211 + BWI76_RS00675 0.21 -1.8 138,225 - BWI76_RS00675 0.22 -0.7 138,375 - BWI76_RS00675 0.34 -1.0 138,501 - BWI76_RS00675 0.44 -3.5 138,501 - BWI76_RS00675 0.44 -3.2 138,530 + BWI76_RS00675 0.46 -2.8 138,543 - BWI76_RS00675 0.47 -1.8 138,543 - BWI76_RS00675 0.47 -3.5 138,563 - BWI76_RS00675 0.49 -0.4 138,715 + BWI76_RS00675 0.61 -2.6 138,723 - BWI76_RS00675 0.62 -1.4 138,738 - BWI76_RS00675 0.63 -1.6 138,757 + BWI76_RS00675 0.64 -0.1 138,767 + BWI76_RS00675 0.65 -0.9 138,767 + +1.2 138,775 - BWI76_RS00675 0.66 -2.0 138,775 - BWI76_RS00675 0.66 -1.8 138,775 - BWI76_RS00675 0.66 -2.8 138,821 + BWI76_RS00675 0.69 -3.0 138,973 - BWI76_RS00675 0.82 -2.2 138,973 - BWI76_RS00675 0.82 -2.1 138,998 - BWI76_RS00675 0.83 -0.8 139,031 - BWI76_RS00675 0.86 -0.9 139,130 - -3.3 139,186 + -1.2 139,228 - -0.9 139,238 - -0.8 139,276 + -1.7 139,385 + BWI76_RS00680 0.12 -1.4 139,436 - BWI76_RS00680 0.16 -2.9 139,438 + BWI76_RS00680 0.16 -2.6 139,530 + BWI76_RS00680 0.22 -3.9 139,540 + BWI76_RS00680 0.23 -3.4 139,565 + BWI76_RS00680 0.25 -0.4 139,836 - BWI76_RS00680 0.43 -3.7 140,084 + BWI76_RS00680 0.60 -1.4 140,181 - BWI76_RS00680 0.67 -3.2 140,190 - BWI76_RS00680 0.67 -1.2
Or see this region's nucleotide sequence