Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_941

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_940 and Ac3H11_941 are separated by 163 nucleotidesAc3H11_941 and Ac3H11_942 are separated by 36 nucleotidesAc3H11_942 and Ac3H11_943 are separated by 27 nucleotides Ac3H11_940 - Glutamate racemase (EC 5.1.1.3), at 59,602 to 60,495 _940 Ac3H11_941 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 60,659 to 62,236 _941 Ac3H11_942 - hypothetical protein, at 62,273 to 62,392 _942 Ac3H11_943 - Fumarate hydratase class II (EC 4.2.1.2), at 62,420 to 63,829 _943 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.537 kb on + strandat 60.537 kb on + strandat 60.538 kb on - strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 62.358 kb on + strand, within Ac3H11_942at 62.359 kb on - strand, within Ac3H11_942at 62.359 kb on - strand, within Ac3H11_942at 62.609 kb on + strand, within Ac3H11_943at 62.609 kb on + strand, within Ac3H11_943at 62.610 kb on - strand, within Ac3H11_943at 62.610 kb on - strand, within Ac3H11_943at 63.165 kb on - strand, within Ac3H11_943

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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60,537 + -0.6
60,537 + +0.8
60,538 - -0.9
60,626 + -0.0
60,626 + -0.4
60,626 + -0.2
60,626 + -0.6
60,626 + -0.2
60,626 + -2.2
60,626 + +1.3
60,626 + -0.1
60,626 + -0.6
60,627 - +0.5
60,627 - -0.2
60,627 - +0.1
60,627 - -2.2
60,627 - -0.7
60,627 - +0.4
62,358 + Ac3H11_942 0.71 -2.4
62,359 - Ac3H11_942 0.72 -0.5
62,359 - Ac3H11_942 0.72 +1.4
62,609 + Ac3H11_943 0.13 +1.0
62,609 + Ac3H11_943 0.13 +0.8
62,610 - Ac3H11_943 0.13 +0.0
62,610 - Ac3H11_943 0.13 -0.4
63,165 - Ac3H11_943 0.53 -1.3

Or see this region's nucleotide sequence