Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4043 and Ac3H11_4044 are separated by 121 nucleotides Ac3H11_4044 and Ac3H11_4045 are separated by 18 nucleotides Ac3H11_4045 and Ac3H11_4046 are separated by 377 nucleotides
Ac3H11_4043 - TonB, C-terminal precursor, at 287,772 to 288,632
_4043
Ac3H11_4044 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 288,754 to 289,608
_4044
Ac3H11_4045 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 289,627 to 290,361
_4045
Ac3H11_4046 - cytochrome P450, at 290,739 to 292,187
_4046
Position (kb) 289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 288.630 kb on + strand at 288.631 kb on - strand at 288.631 kb on - strand at 288.784 kb on + strand at 288.785 kb on - strand at 288.872 kb on - strand, within Ac3H11_4044 at 288.872 kb on - strand, within Ac3H11_4044 at 289.063 kb on + strand, within Ac3H11_4044 at 289.064 kb on - strand, within Ac3H11_4044 at 289.064 kb on - strand, within Ac3H11_4044 at 289.064 kb on - strand, within Ac3H11_4044 at 289.298 kb on + strand, within Ac3H11_4044 at 289.423 kb on + strand, within Ac3H11_4044 at 289.423 kb on + strand, within Ac3H11_4044 at 289.423 kb on + strand, within Ac3H11_4044 at 289.424 kb on - strand, within Ac3H11_4044 at 289.424 kb on - strand, within Ac3H11_4044 at 289.424 kb on - strand, within Ac3H11_4044 at 289.435 kb on + strand, within Ac3H11_4044 at 289.435 kb on + strand, within Ac3H11_4044 at 289.435 kb on + strand, within Ac3H11_4044 at 289.435 kb on + strand, within Ac3H11_4044 at 289.435 kb on + strand, within Ac3H11_4044 at 289.435 kb on + strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.436 kb on - strand, within Ac3H11_4044 at 289.814 kb on - strand, within Ac3H11_4045 at 290.140 kb on + strand, within Ac3H11_4045 at 290.140 kb on + strand, within Ac3H11_4045 at 290.140 kb on + strand, within Ac3H11_4045 at 290.140 kb on + strand, within Ac3H11_4045 at 290.141 kb on - strand, within Ac3H11_4045 at 290.141 kb on - strand, within Ac3H11_4045 at 290.200 kb on + strand, within Ac3H11_4045 at 290.201 kb on - strand, within Ac3H11_4045 at 290.201 kb on - strand, within Ac3H11_4045 at 290.201 kb on - strand, within Ac3H11_4045 at 290.201 kb on - strand, within Ac3H11_4045 at 290.302 kb on + strand at 290.354 kb on + strand at 290.354 kb on + strand at 290.354 kb on + strand at 290.354 kb on + strand at 290.354 kb on + strand at 290.354 kb on + strand at 290.355 kb on - strand at 290.355 kb on - strand at 290.355 kb on - strand at 290.355 kb on - strand at 290.355 kb on - strand at 290.402 kb on + strand at 290.402 kb on + strand at 290.402 kb on + strand at 290.402 kb on + strand at 290.403 kb on - strand at 290.403 kb on - strand at 290.423 kb on + strand at 290.423 kb on + strand at 290.448 kb on + strand at 290.448 kb on + strand at 290.448 kb on + strand at 290.449 kb on - strand at 290.490 kb on + strand at 290.490 kb on + strand at 290.490 kb on + strand at 290.491 kb on - strand at 290.491 kb on - strand at 290.491 kb on - strand at 290.491 kb on - strand at 290.491 kb on - strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.494 kb on + strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.495 kb on - strand at 290.560 kb on + strand at 290.560 kb on + strand at 290.640 kb on + strand at 290.640 kb on + strand at 290.640 kb on + strand at 290.640 kb on + strand at 290.640 kb on + strand at 290.640 kb on + strand at 290.640 kb on + strand at 290.641 kb on - strand at 290.641 kb on - strand at 290.641 kb on - strand at 290.641 kb on - strand at 290.641 kb on - strand at 290.641 kb on - strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.650 kb on + strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.651 kb on - strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.652 kb on + strand at 290.653 kb on - strand at 290.653 kb on - strand at 290.740 kb on + strand at 290.741 kb on - strand at 290.766 kb on + strand at 290.766 kb on + strand at 290.767 kb on - strand at 290.767 kb on - strand at 290.767 kb on - strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.840 kb on + strand at 290.841 kb on - strand at 290.841 kb on - strand at 290.841 kb on - strand at 290.841 kb on - strand at 290.842 kb on + strand at 290.842 kb on + strand at 290.843 kb on - strand at 290.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 288,630 + -0.2 288,631 - +0.3 288,631 - +0.3 288,784 + -1.7 288,785 - -3.8 288,872 - Ac3H11_4044 0.14 -0.7 288,872 - Ac3H11_4044 0.14 -3.1 289,063 + Ac3H11_4044 0.36 -2.8 289,064 - Ac3H11_4044 0.36 -3.1 289,064 - Ac3H11_4044 0.36 -1.9 289,064 - Ac3H11_4044 0.36 -2.5 289,298 + Ac3H11_4044 0.64 -4.0 289,423 + Ac3H11_4044 0.78 -0.2 289,423 + Ac3H11_4044 0.78 -1.9 289,423 + Ac3H11_4044 0.78 -1.5 289,424 - Ac3H11_4044 0.78 -3.0 289,424 - Ac3H11_4044 0.78 -3.0 289,424 - Ac3H11_4044 0.78 -3.0 289,435 + Ac3H11_4044 0.80 -3.0 289,435 + Ac3H11_4044 0.80 -3.3 289,435 + Ac3H11_4044 0.80 -2.7 289,435 + Ac3H11_4044 0.80 -2.7 289,435 + Ac3H11_4044 0.80 -3.2 289,435 + Ac3H11_4044 0.80 -2.7 289,436 - Ac3H11_4044 0.80 -3.8 289,436 - Ac3H11_4044 0.80 -3.0 289,436 - Ac3H11_4044 0.80 -3.0 289,436 - Ac3H11_4044 0.80 -1.7 289,436 - Ac3H11_4044 0.80 +0.1 289,436 - Ac3H11_4044 0.80 -2.4 289,436 - Ac3H11_4044 0.80 -3.4 289,436 - Ac3H11_4044 0.80 -2.5 289,436 - Ac3H11_4044 0.80 -1.7 289,436 - Ac3H11_4044 0.80 -3.9 289,814 - Ac3H11_4045 0.25 -1.2 290,140 + Ac3H11_4045 0.70 +0.2 290,140 + Ac3H11_4045 0.70 -0.3 290,140 + Ac3H11_4045 0.70 -0.1 290,140 + Ac3H11_4045 0.70 +0.2 290,141 - Ac3H11_4045 0.70 -0.7 290,141 - Ac3H11_4045 0.70 +0.4 290,200 + Ac3H11_4045 0.78 -0.3 290,201 - Ac3H11_4045 0.78 +0.2 290,201 - Ac3H11_4045 0.78 +0.1 290,201 - Ac3H11_4045 0.78 -0.7 290,201 - Ac3H11_4045 0.78 +0.2 290,302 + -0.1 290,354 + -0.3 290,354 + +0.1 290,354 + -0.3 290,354 + -0.2 290,354 + -1.5 290,354 + -0.1 290,355 - +0.4 290,355 - -1.6 290,355 - +0.6 290,355 - -0.1 290,355 - +1.5 290,402 + +0.2 290,402 + +0.1 290,402 + +0.3 290,402 + -1.1 290,403 - -1.6 290,403 - -0.2 290,423 + -0.1 290,423 + +0.7 290,448 + -1.9 290,448 + +0.1 290,448 + -1.3 290,449 - +0.4 290,490 + -0.5 290,490 + +0.1 290,490 + +0.4 290,491 - -0.1 290,491 - -0.2 290,491 - -0.8 290,491 - -0.4 290,491 - -1.0 290,494 + +1.7 290,494 + +0.5 290,494 + +1.0 290,494 + +0.8 290,494 + -1.0 290,494 + +0.3 290,494 + -0.8 290,494 + +0.3 290,494 + -0.3 290,495 - -1.0 290,495 - +0.0 290,495 - -0.2 290,495 - -0.6 290,495 - -0.2 290,495 - -0.7 290,495 - +0.6 290,495 - -1.0 290,495 - +0.7 290,560 + +0.6 290,560 + +0.3 290,640 + -0.2 290,640 + -0.3 290,640 + -0.3 290,640 + +1.0 290,640 + -0.0 290,640 + +1.8 290,640 + -0.5 290,641 - +0.3 290,641 - -0.1 290,641 - +0.4 290,641 - +0.3 290,641 - +0.4 290,641 - -0.8 290,650 + -0.3 290,650 + -0.1 290,650 + +0.0 290,650 + -2.5 290,650 + -0.5 290,650 + -0.5 290,650 + -0.1 290,650 + -0.1 290,650 + +0.7 290,651 - -0.7 290,651 - +0.4 290,651 - -0.1 290,651 - +0.8 290,651 - +2.0 290,651 - -0.7 290,651 - +0.5 290,651 - +0.7 290,651 - -0.6 290,651 - +0.2 290,651 - +0.0 290,652 + -0.3 290,652 + -1.5 290,652 + -0.3 290,652 + -2.1 290,652 + -0.8 290,652 + -0.2 290,652 + +1.8 290,652 + +0.3 290,652 + +0.8 290,653 - -1.5 290,653 - -1.5 290,740 + -0.5 290,741 - -3.0 290,766 + -2.1 290,766 + -1.4 290,767 - +0.5 290,767 - +0.4 290,767 - -0.7 290,840 + -3.0 290,840 + +0.1 290,840 + -0.6 290,840 + +0.6 290,840 + -1.6 290,840 + -1.5 290,840 + +0.9 290,841 - -0.3 290,841 - -0.0 290,841 - +0.0 290,841 - -0.3 290,842 + -0.2 290,842 + -0.5 290,843 - -0.5 290,843 - +0.2
Or see this region's nucleotide sequence