Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3708

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3707 and Ac3H11_3708 are separated by 257 nucleotidesAc3H11_3708 and Ac3H11_3709 are separated by 12 nucleotidesAc3H11_3709 and Ac3H11_3710 are separated by 113 nucleotides Ac3H11_3707 - Membrane-associated phospholipid phosphatase (EC 3.1.3.27), at 67,502 to 68,398 _3707 Ac3H11_3708 - Transcription regulator [contains diacylglycerol kinase catalytic domain], at 68,656 to 69,720 _3708 Ac3H11_3709 - Probable DNA repair exonuclease, at 69,733 to 70,527 _3709 Ac3H11_3710 - Outer membrane protein (porin), at 70,641 to 71,825 _3710 Position (kb) 68 69 70Strain fitness (log2 ratio) -1 0 1 2at 67.737 kb on + strand, within Ac3H11_3707at 67.752 kb on + strand, within Ac3H11_3707at 67.752 kb on + strand, within Ac3H11_3707at 67.752 kb on + strand, within Ac3H11_3707at 67.753 kb on - strand, within Ac3H11_3707at 67.753 kb on - strand, within Ac3H11_3707at 67.753 kb on - strand, within Ac3H11_3707at 67.794 kb on + strand, within Ac3H11_3707at 67.794 kb on + strand, within Ac3H11_3707at 67.795 kb on - strand, within Ac3H11_3707at 68.463 kb on + strandat 68.499 kb on + strandat 68.499 kb on + strandat 68.499 kb on + strandat 68.499 kb on + strandat 68.500 kb on - strandat 68.500 kb on - strandat 68.500 kb on - strandat 68.519 kb on + strandat 68.519 kb on + strandat 68.519 kb on + strandat 68.519 kb on + strandat 68.519 kb on + strandat 68.519 kb on + strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.520 kb on - strandat 68.977 kb on + strand, within Ac3H11_3708at 68.978 kb on - strand, within Ac3H11_3708at 68.978 kb on - strand, within Ac3H11_3708at 70.054 kb on + strand, within Ac3H11_3709at 70.054 kb on + strand, within Ac3H11_3709at 70.054 kb on + strand, within Ac3H11_3709at 70.054 kb on + strand, within Ac3H11_3709at 70.055 kb on - strand, within Ac3H11_3709at 70.055 kb on - strand, within Ac3H11_3709at 70.055 kb on - strand, within Ac3H11_3709at 70.055 kb on - strand, within Ac3H11_3709at 70.055 kb on - strand, within Ac3H11_3709at 70.055 kb on - strand, within Ac3H11_3709at 70.468 kb on + strandat 70.468 kb on + strandat 70.642 kb on + strandat 70.642 kb on + strandat 70.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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67,737 + Ac3H11_3707 0.26 +2.2
67,752 + Ac3H11_3707 0.28 -0.9
67,752 + Ac3H11_3707 0.28 -0.5
67,752 + Ac3H11_3707 0.28 +0.0
67,753 - Ac3H11_3707 0.28 +0.3
67,753 - Ac3H11_3707 0.28 +0.3
67,753 - Ac3H11_3707 0.28 +0.4
67,794 + Ac3H11_3707 0.33 -0.2
67,794 + Ac3H11_3707 0.33 +1.1
67,795 - Ac3H11_3707 0.33 -0.0
68,463 + +0.8
68,499 + +1.3
68,499 + +1.0
68,499 + -1.4
68,499 + -0.6
68,500 - -0.5
68,500 - +0.0
68,500 - +0.1
68,519 + -0.1
68,519 + +0.8
68,519 + +0.5
68,519 + +0.5
68,519 + +0.4
68,519 + -1.1
68,520 - -0.7
68,520 - +0.4
68,520 - -0.1
68,520 - +0.4
68,520 - -0.5
68,520 - -0.6
68,520 - +0.3
68,520 - -0.3
68,977 + Ac3H11_3708 0.30 -1.3
68,978 - Ac3H11_3708 0.30 -0.4
68,978 - Ac3H11_3708 0.30 -1.0
70,054 + Ac3H11_3709 0.40 +0.3
70,054 + Ac3H11_3709 0.40 +0.1
70,054 + Ac3H11_3709 0.40 -0.1
70,054 + Ac3H11_3709 0.40 +2.2
70,055 - Ac3H11_3709 0.41 -0.1
70,055 - Ac3H11_3709 0.41 -0.4
70,055 - Ac3H11_3709 0.41 +0.7
70,055 - Ac3H11_3709 0.41 -0.5
70,055 - Ac3H11_3709 0.41 -1.1
70,055 - Ac3H11_3709 0.41 +0.3
70,468 + +0.5
70,468 + +0.4
70,642 + +0.7
70,642 + -0.2
70,642 + -0.9

Or see this region's nucleotide sequence