Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3169

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3168 and Ac3H11_3169 are separated by 196 nucleotidesAc3H11_3169 and Ac3H11_3170 are separated by 3 nucleotides Ac3H11_3168 - Response regulator, at 71,446 to 72,759 _3168 Ac3H11_3169 - hypothetical protein, at 72,956 to 73,075 _3169 Ac3H11_3170 - membrane protein, putative, at 73,079 to 74,716 _3170 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.998 kb on + strand, within Ac3H11_3168at 72.125 kb on + strand, within Ac3H11_3168at 72.126 kb on - strand, within Ac3H11_3168at 72.126 kb on - strand, within Ac3H11_3168at 72.238 kb on + strand, within Ac3H11_3168at 72.239 kb on - strand, within Ac3H11_3168at 72.239 kb on - strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.375 kb on + strand, within Ac3H11_3168at 72.412 kb on + strand, within Ac3H11_3168at 72.474 kb on + strand, within Ac3H11_3168at 72.626 kb on + strand, within Ac3H11_3168at 72.627 kb on - strand, within Ac3H11_3168at 72.665 kb on + strandat 72.666 kb on - strandat 72.666 kb on - strandat 72.666 kb on - strandat 72.757 kb on + strandat 72.757 kb on + strandat 72.758 kb on - strandat 72.758 kb on - strandat 72.766 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.900 kb on + strandat 72.901 kb on - strandat 72.901 kb on - strandat 72.901 kb on - strandat 72.957 kb on + strandat 72.958 kb on - strandat 72.958 kb on - strandat 72.968 kb on + strand, within Ac3H11_3169at 73.208 kb on - strandat 73.311 kb on - strand, within Ac3H11_3170at 73.607 kb on + strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.725 kb on - strand, within Ac3H11_3170at 73.910 kb on + strand, within Ac3H11_3170at 73.910 kb on + strand, within Ac3H11_3170at 73.910 kb on + strand, within Ac3H11_3170at 73.911 kb on - strand, within Ac3H11_3170at 73.911 kb on - strand, within Ac3H11_3170at 73.911 kb on - strand, within Ac3H11_3170at 73.955 kb on + strand, within Ac3H11_3170at 73.955 kb on + strand, within Ac3H11_3170at 73.955 kb on + strand, within Ac3H11_3170at 73.956 kb on - strand, within Ac3H11_3170

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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71,998 + Ac3H11_3168 0.42 -0.0
72,125 + Ac3H11_3168 0.52 +1.0
72,126 - Ac3H11_3168 0.52 +0.7
72,126 - Ac3H11_3168 0.52 -3.4
72,238 + Ac3H11_3168 0.60 -1.2
72,239 - Ac3H11_3168 0.60 +0.3
72,239 - Ac3H11_3168 0.60 +1.4
72,375 + Ac3H11_3168 0.71 +0.2
72,375 + Ac3H11_3168 0.71 -0.5
72,375 + Ac3H11_3168 0.71 +0.3
72,412 + Ac3H11_3168 0.74 +0.3
72,474 + Ac3H11_3168 0.78 -1.5
72,626 + Ac3H11_3168 0.90 -1.4
72,627 - Ac3H11_3168 0.90 -0.4
72,665 + +0.7
72,666 - -0.1
72,666 - +1.2
72,666 - +0.4
72,757 + -1.1
72,757 + +0.3
72,758 - -1.3
72,758 - -0.6
72,766 + +0.9
72,900 + -0.3
72,900 + +1.0
72,900 + +0.5
72,900 + -1.0
72,900 + -0.9
72,900 + +0.7
72,901 - +0.9
72,901 - -0.5
72,901 - -0.1
72,957 + -2.6
72,958 - -0.1
72,958 - -0.0
72,968 + Ac3H11_3169 0.10 -1.2
73,208 - -1.6
73,311 - Ac3H11_3170 0.14 +0.4
73,607 + Ac3H11_3170 0.32 -0.8
73,725 - Ac3H11_3170 0.39 +0.8
73,725 - Ac3H11_3170 0.39 +2.4
73,725 - Ac3H11_3170 0.39 +0.6
73,910 + Ac3H11_3170 0.51 +0.6
73,910 + Ac3H11_3170 0.51 +0.7
73,910 + Ac3H11_3170 0.51 +0.3
73,911 - Ac3H11_3170 0.51 +0.9
73,911 - Ac3H11_3170 0.51 +1.0
73,911 - Ac3H11_3170 0.51 +0.2
73,955 + Ac3H11_3170 0.53 +0.7
73,955 + Ac3H11_3170 0.53 +0.1
73,955 + Ac3H11_3170 0.53 +1.2
73,956 - Ac3H11_3170 0.54 -0.4

Or see this region's nucleotide sequence