Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2988 and Ac3H11_2989 are separated by 107 nucleotides Ac3H11_2989 and Ac3H11_2990 are separated by 165 nucleotides Ac3H11_2990 and Ac3H11_2991 are separated by 38 nucleotides
Ac3H11_2988 - SoxH protein, homolog, at 5,768 to 6,886
_2988
Ac3H11_2989 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 6,994 to 7,407
_2989
Ac3H11_2990 - Phenylacetic acid degradation protein PaaD, thioesterase, at 7,573 to 7,911
_2990
Ac3H11_2991 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) <small>(from data)</small>, at 7,950 to 9,140
_2991
Position (kb) 7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 6.760 kb on + strand, within Ac3H11_2988 at 6.760 kb on + strand, within Ac3H11_2988 at 6.761 kb on - strand, within Ac3H11_2988 at 6.761 kb on - strand, within Ac3H11_2988 at 6.761 kb on - strand, within Ac3H11_2988 at 6.761 kb on - strand, within Ac3H11_2988 at 6.761 kb on - strand, within Ac3H11_2988 at 6.898 kb on + strand at 6.899 kb on - strand at 6.906 kb on - strand at 6.922 kb on + strand at 6.922 kb on + strand at 6.922 kb on + strand at 6.922 kb on + strand at 6.922 kb on + strand at 6.922 kb on + strand at 6.923 kb on - strand at 6.947 kb on + strand at 6.947 kb on + strand at 6.947 kb on + strand at 6.947 kb on + strand at 6.947 kb on + strand at 6.947 kb on + strand at 6.948 kb on - strand at 6.948 kb on - strand at 6.948 kb on - strand at 6.948 kb on - strand at 6.948 kb on - strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.020 kb on + strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.021 kb on - strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.024 kb on + strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.025 kb on - strand at 7.081 kb on + strand, within Ac3H11_2989 at 7.081 kb on + strand, within Ac3H11_2989 at 7.081 kb on + strand, within Ac3H11_2989 at 7.082 kb on - strand, within Ac3H11_2989 at 7.082 kb on - strand, within Ac3H11_2989 at 7.082 kb on - strand, within Ac3H11_2989 at 7.082 kb on - strand, within Ac3H11_2989 at 7.141 kb on + strand, within Ac3H11_2989 at 7.141 kb on + strand, within Ac3H11_2989 at 7.141 kb on + strand, within Ac3H11_2989 at 7.141 kb on + strand, within Ac3H11_2989 at 7.141 kb on + strand, within Ac3H11_2989 at 7.142 kb on - strand, within Ac3H11_2989 at 7.142 kb on - strand, within Ac3H11_2989 at 7.173 kb on + strand, within Ac3H11_2989 at 7.173 kb on + strand, within Ac3H11_2989 at 7.173 kb on + strand, within Ac3H11_2989 at 7.173 kb on + strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.174 kb on - strand, within Ac3H11_2989 at 7.234 kb on + strand, within Ac3H11_2989 at 7.234 kb on + strand, within Ac3H11_2989 at 7.234 kb on + strand, within Ac3H11_2989 at 7.235 kb on - strand, within Ac3H11_2989 at 7.235 kb on - strand, within Ac3H11_2989 at 7.235 kb on - strand, within Ac3H11_2989 at 7.235 kb on - strand, within Ac3H11_2989 at 7.283 kb on + strand, within Ac3H11_2989 at 7.283 kb on + strand, within Ac3H11_2989 at 7.283 kb on + strand, within Ac3H11_2989 at 7.284 kb on - strand, within Ac3H11_2989 at 7.284 kb on - strand, within Ac3H11_2989 at 7.284 kb on - strand, within Ac3H11_2989 at 7.284 kb on - strand, within Ac3H11_2989 at 7.412 kb on + strand at 7.423 kb on + strand at 7.423 kb on + strand at 7.424 kb on - strand at 7.434 kb on - strand at 7.434 kb on - strand at 7.486 kb on + strand at 7.486 kb on + strand at 7.487 kb on - strand at 7.487 kb on - strand at 7.487 kb on - strand at 7.487 kb on - strand at 7.487 kb on - strand at 7.550 kb on + strand at 7.550 kb on + strand at 7.550 kb on + strand at 7.550 kb on + strand at 7.550 kb on + strand at 7.551 kb on - strand at 7.551 kb on - strand at 7.670 kb on - strand, within Ac3H11_2990 at 7.680 kb on + strand, within Ac3H11_2990 at 7.681 kb on - strand, within Ac3H11_2990 at 7.681 kb on - strand, within Ac3H11_2990 at 7.885 kb on - strand at 8.066 kb on + strand at 8.066 kb on + strand at 8.066 kb on + strand at 8.151 kb on + strand, within Ac3H11_2991 at 8.235 kb on + strand, within Ac3H11_2991 at 8.235 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.304 kb on + strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.305 kb on - strand, within Ac3H11_2991 at 8.415 kb on + strand, within Ac3H11_2991 at 8.415 kb on + strand, within Ac3H11_2991 at 8.416 kb on - strand, within Ac3H11_2991 at 8.416 kb on - strand, within Ac3H11_2991 at 8.416 kb on - strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.418 kb on + strand, within Ac3H11_2991 at 8.419 kb on - strand, within Ac3H11_2991 at 8.419 kb on - strand, within Ac3H11_2991 at 8.419 kb on - strand, within Ac3H11_2991 at 8.481 kb on + strand, within Ac3H11_2991 at 8.482 kb on - strand, within Ac3H11_2991 at 8.697 kb on + strand, within Ac3H11_2991 at 8.697 kb on + strand, within Ac3H11_2991 at 8.697 kb on + strand, within Ac3H11_2991 at 8.697 kb on + strand, within Ac3H11_2991 at 8.698 kb on - strand, within Ac3H11_2991 at 8.698 kb on - strand, within Ac3H11_2991 at 8.698 kb on - strand, within Ac3H11_2991 at 8.766 kb on + strand, within Ac3H11_2991 at 8.766 kb on + strand, within Ac3H11_2991 at 8.766 kb on + strand, within Ac3H11_2991 at 8.766 kb on + strand, within Ac3H11_2991 at 8.767 kb on - strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.841 kb on + strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.842 kb on - strand, within Ac3H11_2991 at 8.874 kb on + strand, within Ac3H11_2991 at 8.874 kb on + strand, within Ac3H11_2991 at 8.874 kb on + strand, within Ac3H11_2991 at 8.874 kb on + strand, within Ac3H11_2991 at 8.874 kb on + strand, within Ac3H11_2991 at 8.875 kb on - strand, within Ac3H11_2991 at 8.875 kb on - strand, within Ac3H11_2991
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 6,760 + Ac3H11_2988 0.89 -0.2 6,760 + Ac3H11_2988 0.89 -2.0 6,761 - Ac3H11_2988 0.89 +0.6 6,761 - Ac3H11_2988 0.89 +1.1 6,761 - Ac3H11_2988 0.89 +0.1 6,761 - Ac3H11_2988 0.89 -2.3 6,761 - Ac3H11_2988 0.89 +0.3 6,898 + -0.7 6,899 - +0.2 6,906 - -0.5 6,922 + -0.6 6,922 + -0.3 6,922 + +1.8 6,922 + +0.4 6,922 + +1.6 6,922 + -1.6 6,923 - +1.5 6,947 + -0.6 6,947 + +0.3 6,947 + +0.0 6,947 + -0.8 6,947 + -2.2 6,947 + -2.1 6,948 - +0.2 6,948 - +1.9 6,948 - -0.4 6,948 - +0.3 6,948 - -1.4 7,020 + -0.1 7,020 + +0.1 7,020 + -0.3 7,020 + +0.2 7,020 + +1.6 7,020 + -0.2 7,020 + -0.3 7,020 + -0.8 7,020 + -0.1 7,021 - -0.3 7,021 - -1.1 7,021 - -0.9 7,021 - +1.1 7,021 - -0.2 7,021 - +0.2 7,021 - -0.6 7,021 - -0.2 7,021 - +0.0 7,021 - -0.1 7,024 + -1.2 7,024 + -0.6 7,024 + -0.3 7,024 + -1.1 7,024 + +0.3 7,024 + +0.1 7,024 + -0.3 7,024 + +1.3 7,024 + -0.3 7,024 + -1.0 7,024 + -2.0 7,024 + -0.3 7,025 - +0.9 7,025 - -0.2 7,025 - -1.1 7,025 - -0.4 7,025 - -1.1 7,025 - -0.5 7,025 - -0.5 7,025 - -0.3 7,025 - -2.1 7,025 - -0.1 7,025 - -1.3 7,025 - -1.0 7,081 + Ac3H11_2989 0.21 -3.5 7,081 + Ac3H11_2989 0.21 -1.3 7,081 + Ac3H11_2989 0.21 -2.5 7,082 - Ac3H11_2989 0.21 +0.7 7,082 - Ac3H11_2989 0.21 +0.2 7,082 - Ac3H11_2989 0.21 -1.0 7,082 - Ac3H11_2989 0.21 -1.1 7,141 + Ac3H11_2989 0.36 -0.8 7,141 + Ac3H11_2989 0.36 -1.5 7,141 + Ac3H11_2989 0.36 +0.2 7,141 + Ac3H11_2989 0.36 -0.8 7,141 + Ac3H11_2989 0.36 -1.7 7,142 - Ac3H11_2989 0.36 -1.5 7,142 - Ac3H11_2989 0.36 -0.0 7,173 + Ac3H11_2989 0.43 -0.7 7,173 + Ac3H11_2989 0.43 +0.5 7,173 + Ac3H11_2989 0.43 -0.2 7,173 + Ac3H11_2989 0.43 +1.0 7,174 - Ac3H11_2989 0.43 +2.0 7,174 - Ac3H11_2989 0.43 +0.0 7,174 - Ac3H11_2989 0.43 +0.1 7,174 - Ac3H11_2989 0.43 +0.0 7,174 - Ac3H11_2989 0.43 +0.3 7,174 - Ac3H11_2989 0.43 -0.6 7,174 - Ac3H11_2989 0.43 -1.8 7,174 - Ac3H11_2989 0.43 -1.6 7,174 - Ac3H11_2989 0.43 -2.1 7,234 + Ac3H11_2989 0.58 -0.2 7,234 + Ac3H11_2989 0.58 +0.8 7,234 + Ac3H11_2989 0.58 -0.5 7,235 - Ac3H11_2989 0.58 +0.3 7,235 - Ac3H11_2989 0.58 -1.1 7,235 - Ac3H11_2989 0.58 +0.3 7,235 - Ac3H11_2989 0.58 +0.0 7,283 + Ac3H11_2989 0.70 -0.7 7,283 + Ac3H11_2989 0.70 +0.1 7,283 + Ac3H11_2989 0.70 -1.1 7,284 - Ac3H11_2989 0.70 -0.1 7,284 - Ac3H11_2989 0.70 -2.3 7,284 - Ac3H11_2989 0.70 -0.6 7,284 - Ac3H11_2989 0.70 -0.4 7,412 + -0.1 7,423 + +0.2 7,423 + -1.0 7,424 - -0.0 7,434 - +0.6 7,434 - +0.5 7,486 + -0.9 7,486 + -0.3 7,487 - +0.5 7,487 - +1.4 7,487 - +1.2 7,487 - -0.9 7,487 - -0.1 7,550 + +0.8 7,550 + +0.1 7,550 + +1.1 7,550 + +0.2 7,550 + -2.1 7,551 - +0.2 7,551 - +0.8 7,670 - Ac3H11_2990 0.29 +0.5 7,680 + Ac3H11_2990 0.32 +0.9 7,681 - Ac3H11_2990 0.32 +0.4 7,681 - Ac3H11_2990 0.32 +0.2 7,885 - -0.2 8,066 + +0.4 8,066 + +0.5 8,066 + +0.5 8,151 + Ac3H11_2991 0.17 +0.6 8,235 + Ac3H11_2991 0.24 +0.7 8,235 + Ac3H11_2991 0.24 +0.5 8,304 + Ac3H11_2991 0.30 +0.3 8,304 + Ac3H11_2991 0.30 +1.2 8,304 + Ac3H11_2991 0.30 +0.9 8,304 + Ac3H11_2991 0.30 +0.6 8,304 + Ac3H11_2991 0.30 +1.0 8,304 + Ac3H11_2991 0.30 +0.5 8,304 + Ac3H11_2991 0.30 +0.2 8,304 + Ac3H11_2991 0.30 +1.3 8,305 - Ac3H11_2991 0.30 +0.4 8,305 - Ac3H11_2991 0.30 -0.1 8,305 - Ac3H11_2991 0.30 +0.2 8,305 - Ac3H11_2991 0.30 +0.4 8,305 - Ac3H11_2991 0.30 +0.7 8,305 - Ac3H11_2991 0.30 +0.1 8,305 - Ac3H11_2991 0.30 +0.5 8,305 - Ac3H11_2991 0.30 +1.1 8,305 - Ac3H11_2991 0.30 +0.4 8,415 + Ac3H11_2991 0.39 +0.6 8,415 + Ac3H11_2991 0.39 -0.6 8,416 - Ac3H11_2991 0.39 +0.7 8,416 - Ac3H11_2991 0.39 +0.2 8,416 - Ac3H11_2991 0.39 -0.2 8,418 + Ac3H11_2991 0.39 +0.7 8,418 + Ac3H11_2991 0.39 +0.2 8,418 + Ac3H11_2991 0.39 +0.4 8,418 + Ac3H11_2991 0.39 +0.5 8,418 + Ac3H11_2991 0.39 -1.5 8,418 + Ac3H11_2991 0.39 +0.9 8,418 + Ac3H11_2991 0.39 +0.0 8,418 + Ac3H11_2991 0.39 +0.7 8,418 + Ac3H11_2991 0.39 +1.2 8,418 + Ac3H11_2991 0.39 -0.3 8,419 - Ac3H11_2991 0.39 +0.8 8,419 - Ac3H11_2991 0.39 +0.1 8,419 - Ac3H11_2991 0.39 -0.8 8,481 + Ac3H11_2991 0.45 +0.5 8,482 - Ac3H11_2991 0.45 +0.3 8,697 + Ac3H11_2991 0.63 +0.1 8,697 + Ac3H11_2991 0.63 -1.2 8,697 + Ac3H11_2991 0.63 +0.6 8,697 + Ac3H11_2991 0.63 +1.2 8,698 - Ac3H11_2991 0.63 +0.5 8,698 - Ac3H11_2991 0.63 -1.1 8,698 - Ac3H11_2991 0.63 +0.5 8,766 + Ac3H11_2991 0.69 +0.6 8,766 + Ac3H11_2991 0.69 +1.0 8,766 + Ac3H11_2991 0.69 +0.0 8,766 + Ac3H11_2991 0.69 +1.5 8,767 - Ac3H11_2991 0.69 +0.5 8,841 + Ac3H11_2991 0.75 +0.3 8,841 + Ac3H11_2991 0.75 +0.3 8,841 + Ac3H11_2991 0.75 +0.1 8,841 + Ac3H11_2991 0.75 +1.0 8,841 + Ac3H11_2991 0.75 +0.6 8,841 + Ac3H11_2991 0.75 -0.7 8,841 + Ac3H11_2991 0.75 +0.4 8,841 + Ac3H11_2991 0.75 -0.2 8,841 + Ac3H11_2991 0.75 +0.8 8,841 + Ac3H11_2991 0.75 +0.1 8,841 + Ac3H11_2991 0.75 +0.1 8,841 + Ac3H11_2991 0.75 +0.4 8,842 - Ac3H11_2991 0.75 +0.7 8,842 - Ac3H11_2991 0.75 -1.0 8,842 - Ac3H11_2991 0.75 -0.0 8,842 - Ac3H11_2991 0.75 +0.3 8,842 - Ac3H11_2991 0.75 +1.0 8,842 - Ac3H11_2991 0.75 +0.1 8,842 - Ac3H11_2991 0.75 -0.2 8,842 - Ac3H11_2991 0.75 +0.4 8,842 - Ac3H11_2991 0.75 -0.0 8,842 - Ac3H11_2991 0.75 +0.4 8,842 - Ac3H11_2991 0.75 -0.6 8,842 - Ac3H11_2991 0.75 +1.1 8,842 - Ac3H11_2991 0.75 -0.6 8,842 - Ac3H11_2991 0.75 +0.3 8,842 - Ac3H11_2991 0.75 +1.3 8,842 - Ac3H11_2991 0.75 +0.3 8,842 - Ac3H11_2991 0.75 +0.4 8,842 - Ac3H11_2991 0.75 +0.3 8,874 + Ac3H11_2991 0.78 +1.0 8,874 + Ac3H11_2991 0.78 +0.5 8,874 + Ac3H11_2991 0.78 +1.4 8,874 + Ac3H11_2991 0.78 +0.5 8,874 + Ac3H11_2991 0.78 +0.4 8,875 - Ac3H11_2991 0.78 -0.8 8,875 - Ac3H11_2991 0.78 +0.2
Or see this region's nucleotide sequence