Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1723

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1721 and Ac3H11_1722 overlap by 47 nucleotidesAc3H11_1722 and Ac3H11_1723 overlap by 4 nucleotidesAc3H11_1723 and Ac3H11_1724 are separated by 468 nucleotides Ac3H11_1721 - Nucleoside-diphosphate-sugar epimerases, at 326,225 to 327,265 _1721 Ac3H11_1722 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 327,219 to 328,052 _1722 Ac3H11_1723 - Quinone oxidoreductase (EC 1.6.5.5), at 328,049 to 329,032 _1723 Ac3H11_1724 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 329,501 to 330,400 _1724 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1at 327.086 kb on + strand, within Ac3H11_1721at 327.086 kb on + strand, within Ac3H11_1721at 327.087 kb on - strand, within Ac3H11_1721at 327.087 kb on - strand, within Ac3H11_1721at 327.155 kb on - strand, within Ac3H11_1721at 327.233 kb on - strandat 327.400 kb on + strand, within Ac3H11_1722at 327.400 kb on + strand, within Ac3H11_1722at 327.400 kb on + strand, within Ac3H11_1722at 327.400 kb on + strand, within Ac3H11_1722at 327.401 kb on - strand, within Ac3H11_1722at 328.248 kb on + strand, within Ac3H11_1723at 328.248 kb on + strand, within Ac3H11_1723at 328.248 kb on + strand, within Ac3H11_1723at 328.249 kb on - strand, within Ac3H11_1723at 328.249 kb on - strand, within Ac3H11_1723at 328.249 kb on - strand, within Ac3H11_1723at 328.386 kb on + strand, within Ac3H11_1723at 328.386 kb on + strand, within Ac3H11_1723at 328.386 kb on + strand, within Ac3H11_1723at 328.386 kb on + strand, within Ac3H11_1723at 328.387 kb on - strand, within Ac3H11_1723at 328.452 kb on + strand, within Ac3H11_1723at 328.452 kb on + strand, within Ac3H11_1723at 328.452 kb on + strand, within Ac3H11_1723at 328.453 kb on - strand, within Ac3H11_1723at 328.453 kb on - strand, within Ac3H11_1723at 328.453 kb on - strand, within Ac3H11_1723at 328.453 kb on - strand, within Ac3H11_1723at 328.647 kb on + strand, within Ac3H11_1723at 328.647 kb on + strand, within Ac3H11_1723at 328.647 kb on + strand, within Ac3H11_1723at 328.648 kb on - strand, within Ac3H11_1723at 328.718 kb on + strand, within Ac3H11_1723at 328.718 kb on + strand, within Ac3H11_1723at 328.718 kb on + strand, within Ac3H11_1723at 328.718 kb on + strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.719 kb on - strand, within Ac3H11_1723at 328.752 kb on + strand, within Ac3H11_1723at 328.776 kb on + strandat 328.896 kb on + strand, within Ac3H11_1723at 328.896 kb on + strand, within Ac3H11_1723at 328.897 kb on - strand, within Ac3H11_1723at 329.045 kb on + strandat 329.045 kb on + strandat 329.046 kb on - strandat 329.079 kb on + strandat 329.079 kb on + strandat 329.080 kb on - strandat 329.080 kb on - strandat 329.080 kb on - strandat 329.080 kb on - strandat 329.080 kb on - strandat 329.080 kb on - strandat 329.080 kb on - strandat 329.208 kb on + strandat 329.208 kb on + strandat 329.208 kb on + strandat 329.208 kb on + strandat 329.208 kb on + strandat 329.208 kb on + strandat 329.208 kb on + strandat 329.209 kb on - strandat 329.209 kb on - strandat 329.209 kb on - strandat 329.209 kb on - strandat 329.229 kb on + strandat 329.229 kb on + strandat 329.230 kb on - strandat 329.230 kb on - strandat 329.444 kb on - strandat 329.487 kb on + strandat 329.487 kb on + strandat 329.715 kb on - strand, within Ac3H11_1724at 329.747 kb on + strand, within Ac3H11_1724at 329.747 kb on + strand, within Ac3H11_1724at 329.747 kb on + strand, within Ac3H11_1724at 329.747 kb on + strand, within Ac3H11_1724at 329.748 kb on - strand, within Ac3H11_1724at 329.748 kb on - strand, within Ac3H11_1724at 329.748 kb on - strand, within Ac3H11_1724at 329.748 kb on - strand, within Ac3H11_1724at 329.748 kb on - strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.762 kb on + strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 329.763 kb on - strand, within Ac3H11_1724at 330.011 kb on + strand, within Ac3H11_1724at 330.011 kb on + strand, within Ac3H11_1724at 330.011 kb on + strand, within Ac3H11_1724at 330.011 kb on + strand, within Ac3H11_1724at 330.012 kb on - strand, within Ac3H11_1724at 330.012 kb on - strand, within Ac3H11_1724at 330.012 kb on - strand, within Ac3H11_1724at 330.012 kb on - strand, within Ac3H11_1724

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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327,086 + Ac3H11_1721 0.83 +0.3
327,086 + Ac3H11_1721 0.83 -0.1
327,087 - Ac3H11_1721 0.83 -0.9
327,087 - Ac3H11_1721 0.83 +0.0
327,155 - Ac3H11_1721 0.89 +0.1
327,233 - +0.5
327,400 + Ac3H11_1722 0.22 +0.8
327,400 + Ac3H11_1722 0.22 -0.6
327,400 + Ac3H11_1722 0.22 +0.6
327,400 + Ac3H11_1722 0.22 -1.1
327,401 - Ac3H11_1722 0.22 -1.4
328,248 + Ac3H11_1723 0.20 +1.1
328,248 + Ac3H11_1723 0.20 +0.1
328,248 + Ac3H11_1723 0.20 +0.0
328,249 - Ac3H11_1723 0.20 -0.1
328,249 - Ac3H11_1723 0.20 +0.4
328,249 - Ac3H11_1723 0.20 +0.1
328,386 + Ac3H11_1723 0.34 -0.2
328,386 + Ac3H11_1723 0.34 +0.4
328,386 + Ac3H11_1723 0.34 -0.6
328,386 + Ac3H11_1723 0.34 +0.2
328,387 - Ac3H11_1723 0.34 -1.3
328,452 + Ac3H11_1723 0.41 -0.2
328,452 + Ac3H11_1723 0.41 +0.6
328,452 + Ac3H11_1723 0.41 -0.6
328,453 - Ac3H11_1723 0.41 -0.2
328,453 - Ac3H11_1723 0.41 -0.2
328,453 - Ac3H11_1723 0.41 +0.3
328,453 - Ac3H11_1723 0.41 +0.3
328,647 + Ac3H11_1723 0.61 +1.6
328,647 + Ac3H11_1723 0.61 +0.5
328,647 + Ac3H11_1723 0.61 +0.4
328,648 - Ac3H11_1723 0.61 -1.6
328,718 + Ac3H11_1723 0.68 -0.1
328,718 + Ac3H11_1723 0.68 +1.5
328,718 + Ac3H11_1723 0.68 +0.6
328,718 + Ac3H11_1723 0.68 -1.4
328,719 - Ac3H11_1723 0.68 -0.4
328,719 - Ac3H11_1723 0.68 -0.5
328,719 - Ac3H11_1723 0.68 -2.6
328,719 - Ac3H11_1723 0.68 +0.5
328,719 - Ac3H11_1723 0.68 +1.1
328,719 - Ac3H11_1723 0.68 +0.3
328,719 - Ac3H11_1723 0.68 +0.8
328,752 + Ac3H11_1723 0.71 -1.0
328,776 + +1.2
328,896 + Ac3H11_1723 0.86 +0.1
328,896 + Ac3H11_1723 0.86 +0.9
328,897 - Ac3H11_1723 0.86 +0.7
329,045 + +0.4
329,045 + -0.7
329,046 - -0.6
329,079 + +1.1
329,079 + +0.7
329,080 - -0.5
329,080 - -0.8
329,080 - -0.4
329,080 - +0.5
329,080 - -1.3
329,080 - -0.2
329,080 - -0.1
329,208 + -0.3
329,208 + -0.1
329,208 + +1.3
329,208 + -0.8
329,208 + -0.0
329,208 + +0.2
329,208 + -0.5
329,209 - -0.9
329,209 - -0.2
329,209 - +0.5
329,209 - +0.6
329,229 + +0.4
329,229 + -1.7
329,230 - -1.1
329,230 - +0.5
329,444 - +0.7
329,487 + -1.6
329,487 + -1.2
329,715 - Ac3H11_1724 0.24 -0.3
329,747 + Ac3H11_1724 0.27 +0.3
329,747 + Ac3H11_1724 0.27 -0.2
329,747 + Ac3H11_1724 0.27 -1.1
329,747 + Ac3H11_1724 0.27 -0.7
329,748 - Ac3H11_1724 0.27 -0.6
329,748 - Ac3H11_1724 0.27 -1.0
329,748 - Ac3H11_1724 0.27 -1.5
329,748 - Ac3H11_1724 0.27 -0.7
329,748 - Ac3H11_1724 0.27 -0.1
329,762 + Ac3H11_1724 0.29 -0.1
329,762 + Ac3H11_1724 0.29 +0.6
329,762 + Ac3H11_1724 0.29 -1.5
329,762 + Ac3H11_1724 0.29 -0.3
329,762 + Ac3H11_1724 0.29 +0.6
329,762 + Ac3H11_1724 0.29 +1.0
329,762 + Ac3H11_1724 0.29 -0.2
329,762 + Ac3H11_1724 0.29 -0.3
329,762 + Ac3H11_1724 0.29 -1.4
329,762 + Ac3H11_1724 0.29 +0.4
329,763 - Ac3H11_1724 0.29 +0.3
329,763 - Ac3H11_1724 0.29 -1.0
329,763 - Ac3H11_1724 0.29 -0.7
329,763 - Ac3H11_1724 0.29 -0.1
329,763 - Ac3H11_1724 0.29 -1.0
329,763 - Ac3H11_1724 0.29 +0.6
329,763 - Ac3H11_1724 0.29 -0.7
329,763 - Ac3H11_1724 0.29 +0.5
329,763 - Ac3H11_1724 0.29 +0.4
330,011 + Ac3H11_1724 0.57 +0.9
330,011 + Ac3H11_1724 0.57 +0.1
330,011 + Ac3H11_1724 0.57 -0.9
330,011 + Ac3H11_1724 0.57 -0.7
330,012 - Ac3H11_1724 0.57 +0.7
330,012 - Ac3H11_1724 0.57 +0.6
330,012 - Ac3H11_1724 0.57 +0.9
330,012 - Ac3H11_1724 0.57 -0.1

Or see this region's nucleotide sequence