Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1625

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1624 and Ac3H11_1625 are separated by 84 nucleotidesAc3H11_1625 and Ac3H11_1626 overlap by 11 nucleotidesAc3H11_1626 and Ac3H11_1627 are separated by 40 nucleotidesAc3H11_1627 and Ac3H11_1628 are separated by 40 nucleotides Ac3H11_1624 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 207,013 to 209,295 _1624 Ac3H11_1625 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 209,380 to 211,749 _1625 Ac3H11_1626 - hypothetical protein, at 211,739 to 212,047 _1626 Ac3H11_1627 - hypothetical protein, at 212,088 to 212,468 _1627 Ac3H11_1628 - Large extracellular alpha-helical protein, at 212,509 to 218,493 _1628 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 208.451 kb on + strand, within Ac3H11_1624at 208.529 kb on + strand, within Ac3H11_1624at 208.529 kb on + strand, within Ac3H11_1624at 208.529 kb on + strand, within Ac3H11_1624at 208.530 kb on - strand, within Ac3H11_1624at 208.530 kb on - strand, within Ac3H11_1624at 208.530 kb on - strand, within Ac3H11_1624at 208.530 kb on - strand, within Ac3H11_1624at 208.647 kb on - strand, within Ac3H11_1624at 208.739 kb on + strand, within Ac3H11_1624at 208.739 kb on + strand, within Ac3H11_1624at 208.739 kb on + strand, within Ac3H11_1624at 208.739 kb on + strand, within Ac3H11_1624at 208.739 kb on + strand, within Ac3H11_1624at 208.740 kb on - strand, within Ac3H11_1624at 208.740 kb on - strand, within Ac3H11_1624at 208.740 kb on - strand, within Ac3H11_1624at 208.796 kb on + strand, within Ac3H11_1624at 208.796 kb on + strand, within Ac3H11_1624at 208.796 kb on + strand, within Ac3H11_1624at 208.796 kb on + strand, within Ac3H11_1624at 208.797 kb on - strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.859 kb on + strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.860 kb on - strand, within Ac3H11_1624at 208.898 kb on + strand, within Ac3H11_1624at 208.898 kb on + strand, within Ac3H11_1624at 208.898 kb on + strand, within Ac3H11_1624at 208.899 kb on - strand, within Ac3H11_1624at 208.899 kb on - strand, within Ac3H11_1624at 209.071 kb on + strandat 209.071 kb on + strandat 209.072 kb on - strandat 209.072 kb on - strandat 209.072 kb on - strandat 209.072 kb on - strandat 209.174 kb on + strandat 209.174 kb on + strandat 209.174 kb on + strandat 209.174 kb on + strandat 209.295 kb on + strandat 209.296 kb on - strandat 209.296 kb on - strandat 209.359 kb on + strandat 209.360 kb on - strandat 209.360 kb on - strandat 209.360 kb on - strandat 209.371 kb on + strandat 209.371 kb on + strandat 209.372 kb on - strandat 209.689 kb on + strand, within Ac3H11_1625at 209.689 kb on + strand, within Ac3H11_1625at 209.744 kb on + strand, within Ac3H11_1625at 209.745 kb on - strand, within Ac3H11_1625at 210.053 kb on + strand, within Ac3H11_1625at 210.054 kb on - strand, within Ac3H11_1625at 210.371 kb on + strand, within Ac3H11_1625at 210.372 kb on - strand, within Ac3H11_1625at 210.372 kb on - strand, within Ac3H11_1625at 210.524 kb on + strand, within Ac3H11_1625at 210.525 kb on - strand, within Ac3H11_1625at 210.525 kb on - strand, within Ac3H11_1625at 210.539 kb on + strand, within Ac3H11_1625at 210.539 kb on + strand, within Ac3H11_1625at 210.539 kb on + strand, within Ac3H11_1625at 210.539 kb on + strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.540 kb on - strand, within Ac3H11_1625at 210.615 kb on + strand, within Ac3H11_1625at 211.214 kb on + strand, within Ac3H11_1625at 211.214 kb on + strand, within Ac3H11_1625at 211.214 kb on + strand, within Ac3H11_1625at 211.215 kb on - strand, within Ac3H11_1625at 211.986 kb on + strand, within Ac3H11_1626at 211.986 kb on + strand, within Ac3H11_1626at 212.200 kb on + strand, within Ac3H11_1627at 212.200 kb on + strand, within Ac3H11_1627at 212.200 kb on + strand, within Ac3H11_1627at 212.200 kb on + strand, within Ac3H11_1627at 212.200 kb on + strand, within Ac3H11_1627at 212.200 kb on + strand, within Ac3H11_1627at 212.200 kb on + strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.201 kb on - strand, within Ac3H11_1627at 212.290 kb on + strand, within Ac3H11_1627at 212.290 kb on + strand, within Ac3H11_1627at 212.290 kb on + strand, within Ac3H11_1627at 212.290 kb on + strand, within Ac3H11_1627at 212.291 kb on - strand, within Ac3H11_1627at 212.291 kb on - strand, within Ac3H11_1627at 212.380 kb on + strand, within Ac3H11_1627at 212.380 kb on + strand, within Ac3H11_1627at 212.380 kb on + strand, within Ac3H11_1627at 212.380 kb on + strand, within Ac3H11_1627at 212.380 kb on + strand, within Ac3H11_1627at 212.381 kb on - strand, within Ac3H11_1627at 212.381 kb on - strand, within Ac3H11_1627at 212.570 kb on + strandat 212.570 kb on + strandat 212.570 kb on + strandat 212.571 kb on - strandat 212.571 kb on - strandat 212.571 kb on - strandat 212.633 kb on + strandat 212.633 kb on + strandat 212.633 kb on + strandat 212.634 kb on - strandat 212.634 kb on - strandat 212.634 kb on - strandat 212.634 kb on - strandat 212.663 kb on + strandat 212.663 kb on + strandat 212.664 kb on - strandat 212.664 kb on - strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.669 kb on + strandat 212.670 kb on - strandat 212.670 kb on - strandat 212.670 kb on - strandat 212.673 kb on - strandat 212.673 kb on - strandat 212.673 kb on - strandat 212.673 kb on - strandat 212.673 kb on - strandat 212.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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208,451 + Ac3H11_1624 0.63 +0.8
208,529 + Ac3H11_1624 0.66 +1.0
208,529 + Ac3H11_1624 0.66 -1.7
208,529 + Ac3H11_1624 0.66 -0.7
208,530 - Ac3H11_1624 0.66 +1.0
208,530 - Ac3H11_1624 0.66 +0.3
208,530 - Ac3H11_1624 0.66 +0.5
208,530 - Ac3H11_1624 0.66 +1.1
208,647 - Ac3H11_1624 0.72 -0.0
208,739 + Ac3H11_1624 0.76 -0.7
208,739 + Ac3H11_1624 0.76 -0.2
208,739 + Ac3H11_1624 0.76 +0.7
208,739 + Ac3H11_1624 0.76 +0.7
208,739 + Ac3H11_1624 0.76 +1.2
208,740 - Ac3H11_1624 0.76 +1.2
208,740 - Ac3H11_1624 0.76 +0.6
208,740 - Ac3H11_1624 0.76 +0.1
208,796 + Ac3H11_1624 0.78 +0.8
208,796 + Ac3H11_1624 0.78 +0.9
208,796 + Ac3H11_1624 0.78 -0.0
208,796 + Ac3H11_1624 0.78 +0.7
208,797 - Ac3H11_1624 0.78 +0.1
208,859 + Ac3H11_1624 0.81 +1.3
208,859 + Ac3H11_1624 0.81 +0.6
208,859 + Ac3H11_1624 0.81 -0.6
208,859 + Ac3H11_1624 0.81 +0.5
208,859 + Ac3H11_1624 0.81 +0.4
208,859 + Ac3H11_1624 0.81 +0.9
208,859 + Ac3H11_1624 0.81 -0.6
208,859 + Ac3H11_1624 0.81 +0.8
208,859 + Ac3H11_1624 0.81 +0.8
208,859 + Ac3H11_1624 0.81 -0.8
208,860 - Ac3H11_1624 0.81 +2.1
208,860 - Ac3H11_1624 0.81 +0.8
208,860 - Ac3H11_1624 0.81 +0.4
208,860 - Ac3H11_1624 0.81 +0.8
208,860 - Ac3H11_1624 0.81 +1.8
208,860 - Ac3H11_1624 0.81 -0.1
208,860 - Ac3H11_1624 0.81 +0.0
208,860 - Ac3H11_1624 0.81 +0.0
208,898 + Ac3H11_1624 0.83 +0.2
208,898 + Ac3H11_1624 0.83 +0.9
208,898 + Ac3H11_1624 0.83 +1.5
208,899 - Ac3H11_1624 0.83 +0.9
208,899 - Ac3H11_1624 0.83 +1.0
209,071 + +0.4
209,071 + +0.9
209,072 - +0.4
209,072 - +2.0
209,072 - +1.4
209,072 - +1.3
209,174 + +0.9
209,174 + +1.5
209,174 + +1.2
209,174 + +2.0
209,295 + +1.3
209,296 - +0.7
209,296 - -0.9
209,359 + +1.4
209,360 - -1.5
209,360 - +0.1
209,360 - -0.5
209,371 + -0.9
209,371 + +1.0
209,372 - -0.7
209,689 + Ac3H11_1625 0.13 +0.7
209,689 + Ac3H11_1625 0.13 +1.1
209,744 + Ac3H11_1625 0.15 +1.4
209,745 - Ac3H11_1625 0.15 +0.2
210,053 + Ac3H11_1625 0.28 -0.0
210,054 - Ac3H11_1625 0.28 +0.4
210,371 + Ac3H11_1625 0.42 +0.2
210,372 - Ac3H11_1625 0.42 +0.5
210,372 - Ac3H11_1625 0.42 -0.2
210,524 + Ac3H11_1625 0.48 +0.6
210,525 - Ac3H11_1625 0.48 -0.8
210,525 - Ac3H11_1625 0.48 -0.6
210,539 + Ac3H11_1625 0.49 +0.3
210,539 + Ac3H11_1625 0.49 +0.1
210,539 + Ac3H11_1625 0.49 -0.3
210,539 + Ac3H11_1625 0.49 +1.0
210,540 - Ac3H11_1625 0.49 +1.2
210,540 - Ac3H11_1625 0.49 +1.3
210,540 - Ac3H11_1625 0.49 -1.0
210,540 - Ac3H11_1625 0.49 +0.0
210,540 - Ac3H11_1625 0.49 +0.5
210,540 - Ac3H11_1625 0.49 +0.0
210,540 - Ac3H11_1625 0.49 +0.3
210,615 + Ac3H11_1625 0.52 +0.5
211,214 + Ac3H11_1625 0.77 -0.1
211,214 + Ac3H11_1625 0.77 -0.4
211,214 + Ac3H11_1625 0.77 +0.9
211,215 - Ac3H11_1625 0.77 +0.5
211,986 + Ac3H11_1626 0.80 +0.5
211,986 + Ac3H11_1626 0.80 +0.7
212,200 + Ac3H11_1627 0.29 -0.5
212,200 + Ac3H11_1627 0.29 +0.2
212,200 + Ac3H11_1627 0.29 +0.2
212,200 + Ac3H11_1627 0.29 +0.4
212,200 + Ac3H11_1627 0.29 +0.4
212,200 + Ac3H11_1627 0.29 -1.2
212,200 + Ac3H11_1627 0.29 -1.4
212,201 - Ac3H11_1627 0.30 -0.2
212,201 - Ac3H11_1627 0.30 -0.2
212,201 - Ac3H11_1627 0.30 +1.3
212,201 - Ac3H11_1627 0.30 -0.1
212,201 - Ac3H11_1627 0.30 +0.2
212,201 - Ac3H11_1627 0.30 +0.1
212,201 - Ac3H11_1627 0.30 +0.1
212,201 - Ac3H11_1627 0.30 -1.2
212,290 + Ac3H11_1627 0.53 +0.7
212,290 + Ac3H11_1627 0.53 -1.4
212,290 + Ac3H11_1627 0.53 +1.4
212,290 + Ac3H11_1627 0.53 -0.2
212,291 - Ac3H11_1627 0.53 -1.2
212,291 - Ac3H11_1627 0.53 +0.1
212,380 + Ac3H11_1627 0.77 +0.1
212,380 + Ac3H11_1627 0.77 +1.4
212,380 + Ac3H11_1627 0.77 -1.2
212,380 + Ac3H11_1627 0.77 +0.6
212,380 + Ac3H11_1627 0.77 +0.6
212,381 - Ac3H11_1627 0.77 +0.6
212,381 - Ac3H11_1627 0.77 +0.0
212,570 + +0.5
212,570 + +0.3
212,570 + -1.8
212,571 - -1.3
212,571 - -0.5
212,571 - +0.3
212,633 + -0.4
212,633 + +1.6
212,633 + -0.0
212,634 - +0.5
212,634 - -1.2
212,634 - +1.2
212,634 - +1.6
212,663 + +0.8
212,663 + -0.4
212,664 - +0.7
212,664 - -0.1
212,669 + +0.4
212,669 + +0.7
212,669 + -0.4
212,669 + -0.6
212,669 + -0.0
212,669 + +0.5
212,669 + -0.6
212,669 + +0.0
212,670 - +0.6
212,670 - -0.2
212,670 - -1.2
212,673 - -0.2
212,673 - -0.5
212,673 - +0.2
212,673 - -0.1
212,673 - -0.5
212,673 - +1.1

Or see this region's nucleotide sequence