Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1623

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1621 and Ac3H11_1622 are separated by 10 nucleotidesAc3H11_1622 and Ac3H11_1623 are separated by 149 nucleotidesAc3H11_1623 and Ac3H11_1624 are separated by 219 nucleotides Ac3H11_1621 - FIG111991: hypothetical protein, at 204,082 to 204,885 _1621 Ac3H11_1622 - RNA polymerase sigma factor, at 204,896 to 205,471 _1622 Ac3H11_1623 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data), at 205,621 to 206,793 _1623 Ac3H11_1624 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 207,013 to 209,295 _1624 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 204.836 kb on + strandat 204.836 kb on + strandat 204.836 kb on + strandat 204.836 kb on + strandat 204.837 kb on - strandat 205.269 kb on + strand, within Ac3H11_1622at 205.386 kb on + strand, within Ac3H11_1622at 205.386 kb on + strand, within Ac3H11_1622at 205.386 kb on + strand, within Ac3H11_1622at 205.531 kb on + strandat 205.531 kb on + strandat 205.531 kb on + strandat 205.531 kb on + strandat 205.531 kb on + strandat 205.532 kb on - strandat 205.532 kb on - strandat 205.532 kb on - strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.622 kb on + strandat 205.623 kb on - strandat 205.623 kb on - strandat 205.623 kb on - strandat 205.631 kb on + strandat 205.631 kb on + strandat 205.632 kb on - strandat 205.754 kb on + strand, within Ac3H11_1623at 205.755 kb on - strand, within Ac3H11_1623at 205.770 kb on - strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.393 kb on + strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.394 kb on - strand, within Ac3H11_1623at 206.678 kb on + strandat 206.679 kb on - strandat 206.693 kb on + strandat 206.694 kb on - strandat 206.711 kb on + strandat 206.712 kb on - strandat 206.717 kb on + strandat 206.717 kb on + strandat 206.717 kb on + strandat 206.717 kb on + strandat 206.717 kb on + strandat 206.718 kb on - strandat 206.718 kb on - strandat 206.718 kb on - strandat 206.718 kb on - strandat 206.718 kb on - strandat 206.828 kb on + strandat 206.829 kb on - strandat 206.959 kb on + strandat 206.960 kb on - strandat 206.960 kb on - strandat 206.960 kb on - strandat 206.960 kb on - strandat 206.960 kb on - strandat 206.970 kb on + strandat 206.971 kb on - strandat 206.974 kb on + strandat 207.116 kb on + strandat 207.116 kb on + strandat 207.116 kb on + strandat 207.116 kb on + strandat 207.116 kb on + strandat 207.116 kb on + strandat 207.117 kb on - strandat 207.117 kb on - strandat 207.117 kb on - strandat 207.117 kb on - strandat 207.117 kb on - strandat 207.117 kb on - strandat 207.452 kb on + strand, within Ac3H11_1624at 207.452 kb on + strand, within Ac3H11_1624at 207.452 kb on + strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.453 kb on - strand, within Ac3H11_1624at 207.554 kb on + strand, within Ac3H11_1624at 207.555 kb on - strand, within Ac3H11_1624at 207.555 kb on - strand, within Ac3H11_1624

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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204,836 + -0.8
204,836 + -0.4
204,836 + +0.3
204,836 + +0.8
204,837 - -1.2
205,269 + Ac3H11_1622 0.65 +1.1
205,386 + Ac3H11_1622 0.85 -0.7
205,386 + Ac3H11_1622 0.85 +1.3
205,386 + Ac3H11_1622 0.85 +0.6
205,531 + +1.3
205,531 + -0.1
205,531 + +0.6
205,531 + +0.0
205,531 + +0.4
205,532 - -0.9
205,532 - -0.1
205,532 - +2.2
205,622 + +0.7
205,622 + +1.0
205,622 + -0.6
205,622 + -0.0
205,622 + +0.8
205,622 + -0.2
205,622 + -0.3
205,622 + +0.9
205,623 - +0.6
205,623 - +0.1
205,623 - -0.6
205,631 + +0.2
205,631 + +0.1
205,632 - -0.3
205,754 + Ac3H11_1623 0.11 -0.8
205,755 - Ac3H11_1623 0.11 -1.2
205,770 - Ac3H11_1623 0.13 +0.3
206,393 + Ac3H11_1623 0.66 +2.0
206,393 + Ac3H11_1623 0.66 -1.2
206,393 + Ac3H11_1623 0.66 -0.2
206,393 + Ac3H11_1623 0.66 -0.7
206,393 + Ac3H11_1623 0.66 -0.6
206,393 + Ac3H11_1623 0.66 -1.2
206,393 + Ac3H11_1623 0.66 +0.4
206,393 + Ac3H11_1623 0.66 +0.3
206,393 + Ac3H11_1623 0.66 -1.1
206,393 + Ac3H11_1623 0.66 -1.1
206,393 + Ac3H11_1623 0.66 -0.0
206,393 + Ac3H11_1623 0.66 -0.7
206,394 - Ac3H11_1623 0.66 -1.0
206,394 - Ac3H11_1623 0.66 -1.6
206,394 - Ac3H11_1623 0.66 -0.1
206,394 - Ac3H11_1623 0.66 -2.6
206,394 - Ac3H11_1623 0.66 -0.3
206,394 - Ac3H11_1623 0.66 -1.2
206,394 - Ac3H11_1623 0.66 +0.1
206,394 - Ac3H11_1623 0.66 -0.4
206,394 - Ac3H11_1623 0.66 +0.2
206,394 - Ac3H11_1623 0.66 +0.3
206,678 + -1.4
206,679 - -0.1
206,693 + +0.2
206,694 - -1.4
206,711 + -1.5
206,712 - +0.1
206,717 + +0.6
206,717 + -0.1
206,717 + -0.3
206,717 + -1.4
206,717 + -1.5
206,718 - +0.0
206,718 - -1.0
206,718 - +3.2
206,718 - -1.6
206,718 - -2.4
206,828 + +0.1
206,829 - -0.2
206,959 + +1.0
206,960 - +0.6
206,960 - +0.6
206,960 - +0.4
206,960 - -0.5
206,960 - -0.7
206,970 + -0.4
206,971 - +0.8
206,974 + -0.1
207,116 + -0.7
207,116 + -0.1
207,116 + +0.9
207,116 + +1.0
207,116 + +0.4
207,116 + +0.5
207,117 - +0.1
207,117 - -0.9
207,117 - +0.3
207,117 - -0.7
207,117 - +1.5
207,117 - +0.5
207,452 + Ac3H11_1624 0.19 -0.3
207,452 + Ac3H11_1624 0.19 +0.2
207,452 + Ac3H11_1624 0.19 +0.8
207,453 - Ac3H11_1624 0.19 +0.4
207,453 - Ac3H11_1624 0.19 +0.4
207,453 - Ac3H11_1624 0.19 -0.3
207,453 - Ac3H11_1624 0.19 +1.2
207,453 - Ac3H11_1624 0.19 +4.4
207,453 - Ac3H11_1624 0.19 +1.3
207,453 - Ac3H11_1624 0.19 +1.7
207,453 - Ac3H11_1624 0.19 +0.8
207,453 - Ac3H11_1624 0.19 +1.1
207,453 - Ac3H11_1624 0.19 +0.4
207,453 - Ac3H11_1624 0.19 +0.3
207,554 + Ac3H11_1624 0.24 +0.0
207,555 - Ac3H11_1624 0.24 +0.6
207,555 - Ac3H11_1624 0.24 -0.2

Or see this region's nucleotide sequence