Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1337

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1336 and Ac3H11_1337 overlap by 4 nucleotidesAc3H11_1337 and Ac3H11_1338 are separated by 864 nucleotides Ac3H11_1336 - Ferrous iron transport protein B, at 23,778 to 25,703 _1336 Ac3H11_1337 - Ferrous iron transport protein, at 25,700 to 26,038 _1337 Ac3H11_1338 - Mobile element protein, at 26,903 to 27,022 _1338 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 25.272 kb on + strand, within Ac3H11_1336at 25.272 kb on + strand, within Ac3H11_1336at 25.273 kb on - strand, within Ac3H11_1336at 25.273 kb on - strand, within Ac3H11_1336at 25.570 kb on + strandat 25.570 kb on + strandat 25.570 kb on + strandat 25.570 kb on + strandat 25.571 kb on - strandat 25.571 kb on - strandat 25.645 kb on - strandat 26.199 kb on + strandat 26.199 kb on + strandat 26.199 kb on + strandat 26.199 kb on + strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.304 kb on + strandat 26.370 kb on + strandat 26.370 kb on + strandat 26.371 kb on - strandat 26.468 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.478 kb on - strandat 26.478 kb on - strandat 26.520 kb on + strandat 26.520 kb on + strandat 26.521 kb on - strandat 26.521 kb on - strandat 26.527 kb on - strandat 26.538 kb on + strandat 26.538 kb on + strandat 26.538 kb on + strandat 26.538 kb on + strandat 26.539 kb on - strandat 26.700 kb on - strandat 26.731 kb on + strandat 26.731 kb on + strandat 26.731 kb on + strandat 26.732 kb on - strandat 26.742 kb on + strandat 26.742 kb on + strandat 26.743 kb on - strandat 26.755 kb on + strandat 26.756 kb on - strandat 26.826 kb on + strandat 26.826 kb on + strandat 26.826 kb on + strandat 26.827 kb on - strandat 26.827 kb on - strandat 26.827 kb on - strandat 26.827 kb on - strandat 26.828 kb on + strandat 26.828 kb on + strandat 26.828 kb on + strandat 26.829 kb on - strandat 26.829 kb on - strandat 26.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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25,272 + Ac3H11_1336 0.78 +0.3
25,272 + Ac3H11_1336 0.78 +0.4
25,273 - Ac3H11_1336 0.78 +0.3
25,273 - Ac3H11_1336 0.78 +0.8
25,570 + -0.2
25,570 + +1.0
25,570 + +0.9
25,570 + +0.4
25,571 - +0.5
25,571 - +2.0
25,645 - +3.0
26,199 + +0.4
26,199 + +0.7
26,199 + +0.6
26,199 + -0.6
26,200 - +0.0
26,200 - -0.5
26,200 - +0.1
26,200 - -0.2
26,200 - -0.0
26,304 + +0.0
26,370 + +0.0
26,370 + +1.5
26,371 - +1.2
26,468 + +0.1
26,477 + +0.7
26,477 + -0.6
26,477 + -0.0
26,477 + +0.1
26,477 + +0.6
26,477 + -1.8
26,477 + -0.8
26,477 + +0.7
26,478 - -0.9
26,478 - +0.1
26,520 + +0.4
26,520 + +0.3
26,521 - +0.2
26,521 - -3.1
26,527 - -0.0
26,538 + +0.2
26,538 + -0.1
26,538 + +0.3
26,538 + +1.0
26,539 - -1.5
26,700 - +0.0
26,731 + -0.8
26,731 + +1.0
26,731 + -0.2
26,732 - -0.0
26,742 + -0.3
26,742 + -0.0
26,743 - +0.8
26,755 + -0.5
26,756 - -0.6
26,826 + +0.8
26,826 + -0.8
26,826 + -1.4
26,827 - -0.5
26,827 - -0.4
26,827 - -0.2
26,827 - +1.1
26,828 + -1.5
26,828 + +1.5
26,828 + -0.6
26,829 - -1.2
26,829 - -1.3
26,829 - +1.0

Or see this region's nucleotide sequence