Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_28225 and AO353_28230 are separated by 26 nucleotides AO353_28230 and AO353_28235 are separated by 270 nucleotides
AO353_28225: AO353_28225 - tartrate dehydrogenase, at 6,151,815 to 6,152,894
_28225
AO353_28230: AO353_28230 - succinate-semialdehyde dehydrogenase, at 6,152,921 to 6,154,378
_28230
AO353_28235: AO353_28235 - acetylornithine deacetylase, at 6,154,649 to 6,155,806
_28235
Position (kb)
6152
6153
6154
6155 Strain fitness (log2 ratio)
-2
-1
0
1 at 6152.026 kb on + strand, within AO353_28225 at 6152.026 kb on + strand, within AO353_28225 at 6152.026 kb on + strand, within AO353_28225 at 6152.026 kb on + strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.027 kb on - strand, within AO353_28225 at 6152.294 kb on - strand, within AO353_28225 at 6152.476 kb on + strand, within AO353_28225 at 6152.476 kb on + strand, within AO353_28225 at 6152.476 kb on + strand, within AO353_28225 at 6152.477 kb on - strand, within AO353_28225 at 6152.477 kb on - strand, within AO353_28225 at 6152.587 kb on + strand, within AO353_28225 at 6152.678 kb on - strand, within AO353_28225 at 6152.678 kb on - strand, within AO353_28225 at 6152.743 kb on + strand, within AO353_28225 at 6152.744 kb on - strand, within AO353_28225 at 6152.744 kb on - strand, within AO353_28225 at 6152.744 kb on - strand, within AO353_28225 at 6152.747 kb on - strand, within AO353_28225 at 6152.923 kb on - strand at 6152.958 kb on + strand at 6152.958 kb on + strand at 6152.959 kb on - strand at 6152.959 kb on - strand at 6152.973 kb on + strand at 6153.120 kb on + strand, within AO353_28230 at 6153.120 kb on + strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.121 kb on - strand, within AO353_28230 at 6153.123 kb on + strand, within AO353_28230 at 6153.182 kb on - strand, within AO353_28230 at 6153.465 kb on + strand, within AO353_28230 at 6153.465 kb on + strand, within AO353_28230 at 6153.465 kb on + strand, within AO353_28230 at 6153.465 kb on + strand, within AO353_28230 at 6153.465 kb on + strand, within AO353_28230 at 6153.465 kb on + strand, within AO353_28230 at 6153.466 kb on - strand, within AO353_28230 at 6153.466 kb on - strand, within AO353_28230 at 6153.466 kb on - strand, within AO353_28230 at 6153.583 kb on + strand, within AO353_28230 at 6153.583 kb on + strand, within AO353_28230 at 6153.584 kb on - strand, within AO353_28230 at 6153.584 kb on - strand, within AO353_28230 at 6153.584 kb on - strand, within AO353_28230 at 6153.584 kb on - strand, within AO353_28230 at 6153.991 kb on - strand, within AO353_28230 at 6154.329 kb on + strand at 6154.412 kb on + strand at 6154.413 kb on - strand at 6154.970 kb on + strand, within AO353_28235 at 6154.970 kb on + strand, within AO353_28235 at 6154.970 kb on + strand, within AO353_28235 at 6155.034 kb on - strand, within AO353_28235 at 6155.034 kb on - strand, within AO353_28235 at 6155.034 kb on - strand, within AO353_28235 at 6155.115 kb on + strand, within AO353_28235 at 6155.115 kb on + strand, within AO353_28235 at 6155.116 kb on - strand, within AO353_28235 at 6155.116 kb on - strand, within AO353_28235 at 6155.116 kb on - strand, within AO353_28235 at 6155.127 kb on + strand, within AO353_28235 at 6155.127 kb on + strand, within AO353_28235 at 6155.127 kb on + strand, within AO353_28235 at 6155.128 kb on - strand, within AO353_28235 at 6155.128 kb on - strand, within AO353_28235 at 6155.262 kb on + strand, within AO353_28235 at 6155.262 kb on + strand, within AO353_28235 at 6155.262 kb on + strand, within AO353_28235 at 6155.262 kb on + strand at 6155.263 kb on - strand at 6155.263 kb on - strand, within AO353_28235
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,152,026 + AO353_28225 0.20 +1.0 6,152,026 + AO353_28225 0.20 -1.1 6,152,026 + AO353_28225 0.20 +0.9 6,152,026 + AO353_28225 0.20 -1.4 6,152,027 - AO353_28225 0.20 +0.1 6,152,027 - AO353_28225 0.20 +0.7 6,152,027 - AO353_28225 0.20 -0.5 6,152,027 - AO353_28225 0.20 +0.0 6,152,027 - AO353_28225 0.20 -0.7 6,152,294 - AO353_28225 0.44 +0.5 6,152,476 + AO353_28225 0.61 +1.6 6,152,476 + AO353_28225 0.61 +0.7 6,152,476 + AO353_28225 0.61 -1.3 6,152,477 - AO353_28225 0.61 +0.7 6,152,477 - AO353_28225 0.61 -0.5 6,152,587 + AO353_28225 0.71 +0.2 6,152,678 - AO353_28225 0.80 -0.9 6,152,678 - AO353_28225 0.80 -0.1 6,152,743 + AO353_28225 0.86 -2.1 6,152,744 - AO353_28225 0.86 -0.3 6,152,744 - AO353_28225 0.86 -0.9 6,152,744 - AO353_28225 0.86 -1.1 6,152,747 - AO353_28225 0.86 +1.7 6,152,923 - +0.6 6,152,958 + -0.9 6,152,958 + -0.3 6,152,959 - +1.4 6,152,959 - -0.4 6,152,973 + +0.4 6,153,120 + AO353_28230 0.14 +0.7 6,153,120 + AO353_28230 0.14 +0.7 6,153,121 - AO353_28230 0.14 -0.5 6,153,121 - AO353_28230 0.14 -0.6 6,153,121 - AO353_28230 0.14 -0.8 6,153,121 - AO353_28230 0.14 -0.6 6,153,121 - AO353_28230 0.14 +1.4 6,153,121 - AO353_28230 0.14 -0.4 6,153,121 - AO353_28230 0.14 -0.1 6,153,121 - AO353_28230 0.14 +0.2 6,153,123 + AO353_28230 0.14 -1.6 6,153,182 - AO353_28230 0.18 -0.4 6,153,465 + AO353_28230 0.37 -1.3 6,153,465 + AO353_28230 0.37 -0.0 6,153,465 + AO353_28230 0.37 +0.3 6,153,465 + AO353_28230 0.37 +0.2 6,153,465 + AO353_28230 0.37 -0.6 6,153,465 + AO353_28230 0.37 -0.9 6,153,466 - AO353_28230 0.37 +0.3 6,153,466 - AO353_28230 0.37 -1.3 6,153,466 - AO353_28230 0.37 +0.6 6,153,583 + AO353_28230 0.45 -2.5 6,153,583 + AO353_28230 0.45 -0.9 6,153,584 - AO353_28230 0.45 -0.9 6,153,584 - AO353_28230 0.45 +0.5 6,153,584 - AO353_28230 0.45 -0.9 6,153,584 - AO353_28230 0.45 -1.5 6,153,991 - AO353_28230 0.73 -0.3 6,154,329 + +0.0 6,154,412 + -1.0 6,154,413 - +0.3 6,154,970 + AO353_28235 0.28 -1.2 6,154,970 + AO353_28235 0.28 +0.7 6,154,970 + AO353_28235 0.28 -0.3 6,155,034 - AO353_28235 0.33 -0.1 6,155,034 - AO353_28235 0.33 +0.4 6,155,034 - AO353_28235 0.33 +1.1 6,155,115 + AO353_28235 0.40 +0.5 6,155,115 + AO353_28235 0.40 +0.7 6,155,116 - AO353_28235 0.40 -1.6 6,155,116 - AO353_28235 0.40 -0.5 6,155,116 - AO353_28235 0.40 +1.2 6,155,127 + AO353_28235 0.41 -1.6 6,155,127 + AO353_28235 0.41 +1.1 6,155,127 + AO353_28235 0.41 +1.3 6,155,128 - AO353_28235 0.41 -0.9 6,155,128 - AO353_28235 0.41 -1.0 6,155,262 + AO353_28235 0.53 -0.9 6,155,262 + AO353_28235 0.53 -0.3 6,155,262 + AO353_28235 0.53 -0.3 6,155,262 + -0.3 6,155,263 - +0.7 6,155,263 - AO353_28235 0.53 -0.6
Or see this region's nucleotide sequence