Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27325 and AO353_27330 overlap by 8 nucleotides AO353_27330 and AO353_27335 overlap by 4 nucleotides AO353_27335 and AO353_27340 are separated by 2 nucleotides AO353_27340 and AO353_27345 are separated by 1 nucleotides
AO353_27325: AO353_27325 - hypothetical protein, at 5,973,161 to 5,973,673
_27325
AO353_27330: AO353_27330 - hypothetical protein, at 5,973,666 to 5,974,331
_27330
AO353_27335: AO353_27335 - hypothetical protein, at 5,974,328 to 5,974,642
_27335
AO353_27340: AO353_27340 - hypothetical protein, at 5,974,645 to 5,974,869
_27340
AO353_27345: AO353_27345 - capsid protein, at 5,974,871 to 5,975,899
_27345
Position (kb) 5974
5975 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5973.341 kb on + strand, within AO353_27325 at 5973.341 kb on + strand, within AO353_27325 at 5973.341 kb on + strand, within AO353_27325 at 5973.341 kb on + strand, within AO353_27325 at 5973.342 kb on - strand, within AO353_27325 at 5973.692 kb on - strand at 5973.946 kb on + strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.952 kb on + strand, within AO353_27330 at 5973.958 kb on + strand, within AO353_27330 at 5973.959 kb on - strand, within AO353_27330 at 5973.974 kb on - strand, within AO353_27330 at 5973.993 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.113 kb on + strand, within AO353_27330 at 5974.114 kb on - strand, within AO353_27330 at 5974.114 kb on - strand, within AO353_27330 at 5974.166 kb on + strand, within AO353_27330 at 5974.167 kb on - strand, within AO353_27330 at 5974.347 kb on - strand at 5974.379 kb on + strand, within AO353_27335 at 5974.379 kb on + strand, within AO353_27335 at 5974.380 kb on - strand, within AO353_27335 at 5974.380 kb on - strand, within AO353_27335 at 5974.395 kb on + strand, within AO353_27335 at 5974.646 kb on + strand at 5974.647 kb on - strand at 5974.791 kb on - strand, within AO353_27340 at 5974.791 kb on - strand, within AO353_27340 at 5974.887 kb on + strand at 5974.887 kb on + strand at 5974.888 kb on - strand at 5974.888 kb on - strand at 5974.888 kb on - strand at 5975.040 kb on + strand, within AO353_27345 at 5975.040 kb on + strand, within AO353_27345 at 5975.041 kb on - strand, within AO353_27345 at 5975.047 kb on + strand, within AO353_27345 at 5975.047 kb on + strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.127 kb on + strand, within AO353_27345 at 5975.128 kb on - strand, within AO353_27345 at 5975.139 kb on + strand, within AO353_27345 at 5975.140 kb on - strand, within AO353_27345 at 5975.145 kb on + strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.252 kb on + strand, within AO353_27345 at 5975.253 kb on - strand, within AO353_27345
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,973,341 + AO353_27325 0.35 +1.6 5,973,341 + AO353_27325 0.35 -1.7 5,973,341 + AO353_27325 0.35 +0.5 5,973,341 + AO353_27325 0.35 +0.4 5,973,342 - AO353_27325 0.35 -0.3 5,973,692 - -0.8 5,973,946 + AO353_27330 0.42 +1.3 5,973,947 - AO353_27330 0.42 +0.6 5,973,947 - AO353_27330 0.42 -0.3 5,973,947 - AO353_27330 0.42 -0.1 5,973,952 + AO353_27330 0.43 +0.4 5,973,958 + AO353_27330 0.44 -0.9 5,973,959 - AO353_27330 0.44 +0.1 5,973,974 - AO353_27330 0.46 -1.0 5,973,993 + AO353_27330 0.49 -3.0 5,974,109 + AO353_27330 0.67 +1.5 5,974,109 + AO353_27330 0.67 +0.1 5,974,109 + AO353_27330 0.67 +0.5 5,974,113 + AO353_27330 0.67 -1.0 5,974,114 - AO353_27330 0.67 +0.3 5,974,114 - AO353_27330 0.67 +0.1 5,974,166 + AO353_27330 0.75 -1.0 5,974,167 - AO353_27330 0.75 +0.2 5,974,347 - +0.0 5,974,379 + AO353_27335 0.16 -0.5 5,974,379 + AO353_27335 0.16 -1.5 5,974,380 - AO353_27335 0.17 -0.1 5,974,380 - AO353_27335 0.17 -0.2 5,974,395 + AO353_27335 0.21 -1.3 5,974,646 + +0.3 5,974,647 - +2.7 5,974,791 - AO353_27340 0.65 -2.5 5,974,791 - AO353_27340 0.65 -1.9 5,974,887 + +1.0 5,974,887 + +1.1 5,974,888 - -0.7 5,974,888 - +0.4 5,974,888 - +1.3 5,975,040 + AO353_27345 0.16 +0.1 5,975,040 + AO353_27345 0.16 -0.8 5,975,041 - AO353_27345 0.17 -1.6 5,975,047 + AO353_27345 0.17 -0.3 5,975,047 + AO353_27345 0.17 -1.3 5,975,048 - AO353_27345 0.17 +0.5 5,975,048 - AO353_27345 0.17 -0.6 5,975,048 - AO353_27345 0.17 -0.2 5,975,048 - AO353_27345 0.17 +1.7 5,975,048 - AO353_27345 0.17 +1.5 5,975,048 - AO353_27345 0.17 -0.7 5,975,127 + AO353_27345 0.25 +2.3 5,975,128 - AO353_27345 0.25 -1.1 5,975,139 + AO353_27345 0.26 +0.6 5,975,140 - AO353_27345 0.26 +0.4 5,975,145 + AO353_27345 0.27 -1.0 5,975,182 - AO353_27345 0.30 -0.4 5,975,182 - AO353_27345 0.30 +0.1 5,975,182 - AO353_27345 0.30 -0.1 5,975,252 + AO353_27345 0.37 +0.4 5,975,253 - AO353_27345 0.37 +0.4
Or see this region's nucleotide sequence