Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24700

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24690 and AO353_24695 are separated by 103 nucleotidesAO353_24695 and AO353_24700 are separated by 215 nucleotidesAO353_24700 and AO353_24705 overlap by 4 nucleotides AO353_24690: AO353_24690 - serine 3-dehydrogenase, at 5,435,598 to 5,437,022 _24690 AO353_24695: AO353_24695 - hypothetical protein, at 5,437,126 to 5,437,512 _24695 AO353_24700: AO353_24700 - peptidase, at 5,437,728 to 5,439,521 _24700 AO353_24705: AO353_24705 - hemolysin D, at 5,439,518 to 5,440,852 _24705 Position (kb) 5437 5438 5439 5440Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5436.848 kb on + strand, within AO353_24690at 5436.849 kb on - strand, within AO353_24690at 5436.849 kb on - strand, within AO353_24690at 5436.964 kb on + strandat 5436.964 kb on + strandat 5437.001 kb on + strandat 5437.001 kb on + strandat 5437.001 kb on + strandat 5437.032 kb on + strandat 5437.033 kb on - strandat 5437.085 kb on - strandat 5437.085 kb on - strandat 5437.098 kb on + strandat 5437.099 kb on - strandat 5437.099 kb on - strandat 5437.103 kb on + strandat 5437.103 kb on + strandat 5437.103 kb on + strandat 5437.104 kb on - strandat 5437.104 kb on - strandat 5437.104 kb on - strandat 5437.104 kb on - strandat 5437.104 kb on - strandat 5437.104 kb on - strandat 5437.125 kb on + strandat 5437.125 kb on + strandat 5437.125 kb on + strandat 5437.125 kb on + strandat 5437.126 kb on - strandat 5437.126 kb on - strandat 5437.126 kb on - strandat 5437.144 kb on - strandat 5437.144 kb on - strandat 5437.147 kb on + strandat 5437.147 kb on + strandat 5437.148 kb on - strandat 5437.148 kb on - strandat 5437.148 kb on - strandat 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.199 kb on + strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strandat 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.200 kb on - strand, within AO353_24695at 5437.261 kb on + strand, within AO353_24695at 5437.262 kb on - strand, within AO353_24695at 5437.392 kb on + strand, within AO353_24695at 5437.392 kb on + strand, within AO353_24695at 5437.393 kb on - strand, within AO353_24695at 5437.393 kb on - strand, within AO353_24695at 5437.393 kb on - strand, within AO353_24695at 5437.425 kb on + strand, within AO353_24695at 5437.510 kb on + strandat 5437.600 kb on - strandat 5437.615 kb on - strandat 5437.615 kb on - strandat 5437.784 kb on + strandat 5437.831 kb on + strandat 5437.831 kb on + strandat 5437.831 kb on + strandat 5437.855 kb on - strandat 5437.855 kb on - strandat 5437.870 kb on - strandat 5437.870 kb on - strandat 5438.028 kb on + strand, within AO353_24700at 5438.029 kb on - strand, within AO353_24700at 5438.166 kb on + strand, within AO353_24700at 5438.181 kb on + strand, within AO353_24700at 5438.181 kb on + strand, within AO353_24700at 5438.643 kb on + strand, within AO353_24700at 5438.694 kb on - strand, within AO353_24700at 5438.866 kb on + strand, within AO353_24700at 5438.950 kb on - strand, within AO353_24700at 5439.099 kb on + strand, within AO353_24700at 5439.099 kb on + strand, within AO353_24700at 5439.517 kb on + strandat 5439.517 kb on + strandat 5439.518 kb on - strandat 5439.555 kb on - strandat 5440.157 kb on + strand, within AO353_24705at 5440.157 kb on + strand, within AO353_24705at 5440.157 kb on + strand, within AO353_24705at 5440.158 kb on - strand, within AO353_24705at 5440.314 kb on + strand, within AO353_24705at 5440.315 kb on - strand, within AO353_24705at 5440.315 kb on - strand, within AO353_24705

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,436,848 + AO353_24690 0.88 +0.3
5,436,849 - AO353_24690 0.88 -0.8
5,436,849 - AO353_24690 0.88 +1.4
5,436,964 + -0.4
5,436,964 + -0.9
5,437,001 + +0.1
5,437,001 + +0.6
5,437,001 + -0.3
5,437,032 + +0.2
5,437,033 - +0.8
5,437,085 - +0.6
5,437,085 - -0.2
5,437,098 + +1.0
5,437,099 - +0.9
5,437,099 - -0.0
5,437,103 + +0.6
5,437,103 + +1.9
5,437,103 + -0.0
5,437,104 - +0.4
5,437,104 - +1.2
5,437,104 - +1.6
5,437,104 - +3.0
5,437,104 - +0.1
5,437,104 - -0.1
5,437,125 + -0.9
5,437,125 + -0.9
5,437,125 + +1.1
5,437,125 + -1.4
5,437,126 - +0.2
5,437,126 - +0.1
5,437,126 - -1.2
5,437,144 - -0.4
5,437,144 - -0.7
5,437,147 + -0.2
5,437,147 + -0.4
5,437,148 - +0.2
5,437,148 - +0.1
5,437,148 - -0.7
5,437,199 + AO353_24695 0.19 -0.9
5,437,199 + AO353_24695 0.19 -0.6
5,437,199 + AO353_24695 0.19 -0.4
5,437,199 + AO353_24695 0.19 +1.1
5,437,199 + AO353_24695 0.19 +0.6
5,437,199 + AO353_24695 0.19 +0.6
5,437,199 + AO353_24695 0.19 -1.4
5,437,199 + AO353_24695 0.19 +2.4
5,437,199 + AO353_24695 0.19 +0.3
5,437,199 + AO353_24695 0.19 +1.5
5,437,199 + AO353_24695 0.19 +2.6
5,437,200 - AO353_24695 0.19 +0.9
5,437,200 - AO353_24695 0.19 -0.1
5,437,200 - AO353_24695 0.19 +0.1
5,437,200 - AO353_24695 0.19 -0.2
5,437,200 - AO353_24695 0.19 -0.7
5,437,200 - -1.4
5,437,200 - AO353_24695 0.19 +0.8
5,437,200 - AO353_24695 0.19 -0.7
5,437,200 - AO353_24695 0.19 -1.4
5,437,200 - AO353_24695 0.19 +0.3
5,437,200 - AO353_24695 0.19 +0.6
5,437,200 - AO353_24695 0.19 +0.4
5,437,200 - AO353_24695 0.19 -0.9
5,437,200 - AO353_24695 0.19 +2.4
5,437,200 - AO353_24695 0.19 -1.4
5,437,200 - AO353_24695 0.19 +1.1
5,437,200 - AO353_24695 0.19 -0.4
5,437,200 - AO353_24695 0.19 +0.8
5,437,261 + AO353_24695 0.35 +0.6
5,437,262 - AO353_24695 0.35 -0.4
5,437,392 + AO353_24695 0.69 +0.6
5,437,392 + AO353_24695 0.69 +1.6
5,437,393 - AO353_24695 0.69 +0.0
5,437,393 - AO353_24695 0.69 +0.6
5,437,393 - AO353_24695 0.69 -0.5
5,437,425 + AO353_24695 0.77 -1.5
5,437,510 + +1.2
5,437,600 - +0.1
5,437,615 - +0.6
5,437,615 - -0.4
5,437,784 + +0.4
5,437,831 + -2.4
5,437,831 + -0.9
5,437,831 + -0.2
5,437,855 - -0.9
5,437,855 - +1.4
5,437,870 - -1.7
5,437,870 - +1.2
5,438,028 + AO353_24700 0.17 -1.4
5,438,029 - AO353_24700 0.17 +2.0
5,438,166 + AO353_24700 0.24 +0.3
5,438,181 + AO353_24700 0.25 -0.4
5,438,181 + AO353_24700 0.25 +0.1
5,438,643 + AO353_24700 0.51 -1.3
5,438,694 - AO353_24700 0.54 +0.2
5,438,866 + AO353_24700 0.63 -2.2
5,438,950 - AO353_24700 0.68 -0.4
5,439,099 + AO353_24700 0.76 -1.9
5,439,099 + AO353_24700 0.76 +0.6
5,439,517 + +0.6
5,439,517 + +3.0
5,439,518 - -0.4
5,439,555 - +0.3
5,440,157 + AO353_24705 0.48 +0.9
5,440,157 + AO353_24705 0.48 +2.4
5,440,157 + AO353_24705 0.48 +0.9
5,440,158 - AO353_24705 0.48 -1.9
5,440,314 + AO353_24705 0.60 -1.7
5,440,315 - AO353_24705 0.60 +0.6
5,440,315 - AO353_24705 0.60 +1.1

Or see this region's nucleotide sequence