Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24425

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24415 and AO353_24420 overlap by 17 nucleotidesAO353_24420 and AO353_24425 are separated by 10 nucleotidesAO353_24425 and AO353_24430 are separated by 77 nucleotides AO353_24415: AO353_24415 - glutamine ABC transporter ATP-binding protein, at 5,367,553 to 5,368,356 _24415 AO353_24420: AO353_24420 - amino acid ABC transporter permease, at 5,368,340 to 5,369,008 _24420 AO353_24425: AO353_24425 - amino acid ABC transporter permease, at 5,369,019 to 5,369,684 _24425 AO353_24430: AO353_24430 - amino acid oxidase, at 5,369,762 to 5,371,066 _24430 Position (kb) 5369 5370Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5368.044 kb on - strand, within AO353_24415at 5368.081 kb on - strand, within AO353_24415at 5368.128 kb on + strand, within AO353_24415at 5368.164 kb on - strand, within AO353_24415at 5368.298 kb on + strandat 5368.298 kb on + strandat 5368.347 kb on - strandat 5368.440 kb on + strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.537 kb on + strand, within AO353_24420at 5368.537 kb on + strand, within AO353_24420at 5368.578 kb on + strand, within AO353_24420at 5368.579 kb on - strand, within AO353_24420at 5368.598 kb on + strand, within AO353_24420at 5368.598 kb on + strand, within AO353_24420at 5368.599 kb on - strand, within AO353_24420at 5368.599 kb on - strand, within AO353_24420at 5368.603 kb on - strand, within AO353_24420at 5368.639 kb on + strand, within AO353_24420at 5368.667 kb on + strand, within AO353_24420at 5368.667 kb on + strand, within AO353_24420at 5368.697 kb on - strand, within AO353_24420at 5368.751 kb on + strand, within AO353_24420at 5368.752 kb on - strand, within AO353_24420at 5368.752 kb on - strand, within AO353_24420at 5368.755 kb on + strand, within AO353_24420at 5368.755 kb on + strand, within AO353_24420at 5368.861 kb on + strand, within AO353_24420at 5368.861 kb on + strand, within AO353_24420at 5368.861 kb on + strand, within AO353_24420at 5368.862 kb on - strand, within AO353_24420at 5368.865 kb on + strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.866 kb on - strand, within AO353_24420at 5368.896 kb on - strand, within AO353_24420at 5368.896 kb on - strand, within AO353_24420at 5368.934 kb on + strand, within AO353_24420at 5368.974 kb on - strandat 5368.977 kb on + strandat 5368.977 kb on + strandat 5368.978 kb on - strandat 5369.050 kb on - strandat 5369.063 kb on - strandat 5369.190 kb on + strand, within AO353_24425at 5369.191 kb on - strand, within AO353_24425at 5369.314 kb on - strand, within AO353_24425at 5369.434 kb on + strand, within AO353_24425at 5369.534 kb on - strand, within AO353_24425at 5369.682 kb on + strandat 5369.727 kb on - strandat 5369.752 kb on + strandat 5369.950 kb on + strand, within AO353_24430at 5369.958 kb on + strand, within AO353_24430at 5369.959 kb on - strand, within AO353_24430at 5369.959 kb on - strand, within AO353_24430at 5370.015 kb on + strand, within AO353_24430at 5370.129 kb on + strand, within AO353_24430at 5370.137 kb on + strandat 5370.137 kb on + strand, within AO353_24430at 5370.137 kb on + strand, within AO353_24430at 5370.169 kb on + strand, within AO353_24430at 5370.169 kb on + strand, within AO353_24430at 5370.169 kb on + strand, within AO353_24430at 5370.169 kb on + strand, within AO353_24430at 5370.170 kb on - strand, within AO353_24430at 5370.170 kb on - strand, within AO353_24430at 5370.263 kb on + strand, within AO353_24430at 5370.263 kb on + strand, within AO353_24430at 5370.304 kb on + strand, within AO353_24430at 5370.304 kb on + strand, within AO353_24430at 5370.304 kb on + strand, within AO353_24430at 5370.304 kb on + strand, within AO353_24430at 5370.305 kb on - strand, within AO353_24430at 5370.305 kb on - strand, within AO353_24430at 5370.305 kb on - strand, within AO353_24430at 5370.305 kb on - strandat 5370.305 kb on - strand, within AO353_24430at 5370.335 kb on - strand, within AO353_24430at 5370.335 kb on - strand, within AO353_24430at 5370.335 kb on - strand, within AO353_24430at 5370.353 kb on + strand, within AO353_24430at 5370.354 kb on - strand, within AO353_24430at 5370.394 kb on + strand, within AO353_24430at 5370.394 kb on + strand, within AO353_24430at 5370.395 kb on - strand, within AO353_24430at 5370.412 kb on + strand, within AO353_24430at 5370.467 kb on - strand, within AO353_24430at 5370.474 kb on + strand, within AO353_24430at 5370.474 kb on + strand, within AO353_24430at 5370.475 kb on - strand, within AO353_24430at 5370.475 kb on - strand, within AO353_24430at 5370.509 kb on + strand, within AO353_24430at 5370.510 kb on - strand, within AO353_24430at 5370.510 kb on - strand, within AO353_24430at 5370.546 kb on + strand, within AO353_24430at 5370.546 kb on + strand, within AO353_24430at 5370.546 kb on + strandat 5370.546 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.623 kb on + strand, within AO353_24430at 5370.624 kb on - strand, within AO353_24430at 5370.624 kb on - strand, within AO353_24430at 5370.624 kb on - strand, within AO353_24430at 5370.627 kb on + strand, within AO353_24430at 5370.627 kb on + strand, within AO353_24430at 5370.627 kb on + strand, within AO353_24430at 5370.627 kb on + strand, within AO353_24430at 5370.627 kb on + strand, within AO353_24430at 5370.628 kb on - strandat 5370.628 kb on - strand, within AO353_24430at 5370.647 kb on - strand, within AO353_24430at 5370.647 kb on - strand, within AO353_24430at 5370.647 kb on - strand, within AO353_24430at 5370.665 kb on - strand, within AO353_24430at 5370.665 kb on - strand, within AO353_24430at 5370.665 kb on - strand, within AO353_24430at 5370.669 kb on - strand, within AO353_24430at 5370.669 kb on - strand, within AO353_24430at 5370.669 kb on - strand, within AO353_24430

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,368,044 - AO353_24415 0.61 +0.7
5,368,081 - AO353_24415 0.66 -0.9
5,368,128 + AO353_24415 0.72 -0.7
5,368,164 - AO353_24415 0.76 -1.3
5,368,298 + -0.3
5,368,298 + -0.2
5,368,347 - +2.1
5,368,440 + AO353_24420 0.15 +0.3
5,368,441 - AO353_24420 0.15 +0.1
5,368,441 - AO353_24420 0.15 +1.1
5,368,441 - AO353_24420 0.15 +0.0
5,368,537 + AO353_24420 0.29 -1.3
5,368,537 + AO353_24420 0.29 +0.1
5,368,578 + AO353_24420 0.36 -0.2
5,368,579 - AO353_24420 0.36 -0.3
5,368,598 + AO353_24420 0.39 +0.0
5,368,598 + AO353_24420 0.39 -0.7
5,368,599 - AO353_24420 0.39 +0.5
5,368,599 - AO353_24420 0.39 +0.7
5,368,603 - AO353_24420 0.39 -1.2
5,368,639 + AO353_24420 0.45 +0.1
5,368,667 + AO353_24420 0.49 +0.0
5,368,667 + AO353_24420 0.49 +0.1
5,368,697 - AO353_24420 0.53 -1.2
5,368,751 + AO353_24420 0.61 +0.2
5,368,752 - AO353_24420 0.62 -0.7
5,368,752 - AO353_24420 0.62 -1.6
5,368,755 + AO353_24420 0.62 +0.7
5,368,755 + AO353_24420 0.62 +0.4
5,368,861 + AO353_24420 0.78 +0.7
5,368,861 + AO353_24420 0.78 +1.7
5,368,861 + AO353_24420 0.78 +0.7
5,368,862 - AO353_24420 0.78 -0.7
5,368,865 + AO353_24420 0.78 +0.3
5,368,866 - AO353_24420 0.79 +2.2
5,368,866 - AO353_24420 0.79 -1.3
5,368,866 - AO353_24420 0.79 +0.7
5,368,866 - AO353_24420 0.79 -1.2
5,368,896 - AO353_24420 0.83 -0.8
5,368,896 - AO353_24420 0.83 +1.7
5,368,934 + AO353_24420 0.89 -0.2
5,368,974 - -0.7
5,368,977 + +0.4
5,368,977 + +0.1
5,368,978 - +0.7
5,369,050 - +0.0
5,369,063 - -0.9
5,369,190 + AO353_24425 0.26 +0.5
5,369,191 - AO353_24425 0.26 -2.3
5,369,314 - AO353_24425 0.44 -0.9
5,369,434 + AO353_24425 0.62 -0.7
5,369,534 - AO353_24425 0.77 -2.7
5,369,682 + +0.9
5,369,727 - +2.2
5,369,752 + +0.7
5,369,950 + AO353_24430 0.14 +0.3
5,369,958 + AO353_24430 0.15 +1.0
5,369,959 - AO353_24430 0.15 +3.0
5,369,959 - AO353_24430 0.15 +2.1
5,370,015 + AO353_24430 0.19 +0.8
5,370,129 + AO353_24430 0.28 -1.1
5,370,137 + +0.7
5,370,137 + AO353_24430 0.29 -0.8
5,370,137 + AO353_24430 0.29 -0.9
5,370,169 + AO353_24430 0.31 -0.9
5,370,169 + AO353_24430 0.31 -0.0
5,370,169 + AO353_24430 0.31 +0.7
5,370,169 + AO353_24430 0.31 +0.4
5,370,170 - AO353_24430 0.31 +0.1
5,370,170 - AO353_24430 0.31 -0.6
5,370,263 + AO353_24430 0.38 +1.9
5,370,263 + AO353_24430 0.38 +0.2
5,370,304 + AO353_24430 0.42 +0.2
5,370,304 + AO353_24430 0.42 +0.7
5,370,304 + AO353_24430 0.42 +0.7
5,370,304 + AO353_24430 0.42 +0.7
5,370,305 - AO353_24430 0.42 -0.5
5,370,305 - AO353_24430 0.42 +0.3
5,370,305 - AO353_24430 0.42 +0.4
5,370,305 - -1.3
5,370,305 - AO353_24430 0.42 -0.2
5,370,335 - AO353_24430 0.44 +0.7
5,370,335 - AO353_24430 0.44 -0.3
5,370,335 - AO353_24430 0.44 +0.2
5,370,353 + AO353_24430 0.45 -0.1
5,370,354 - AO353_24430 0.45 +0.4
5,370,394 + AO353_24430 0.48 +0.9
5,370,394 + AO353_24430 0.48 +0.5
5,370,395 - AO353_24430 0.49 -0.3
5,370,412 + AO353_24430 0.50 -0.3
5,370,467 - AO353_24430 0.54 -1.5
5,370,474 + AO353_24430 0.55 +0.1
5,370,474 + AO353_24430 0.55 -0.2
5,370,475 - AO353_24430 0.55 -0.3
5,370,475 - AO353_24430 0.55 +0.7
5,370,509 + AO353_24430 0.57 -0.7
5,370,510 - AO353_24430 0.57 +0.2
5,370,510 - AO353_24430 0.57 -0.2
5,370,546 + AO353_24430 0.60 -0.8
5,370,546 + AO353_24430 0.60 -0.3
5,370,546 + -0.9
5,370,546 + AO353_24430 0.60 +0.3
5,370,623 + AO353_24430 0.66 -0.9
5,370,623 + AO353_24430 0.66 -1.2
5,370,623 + AO353_24430 0.66 +1.7
5,370,623 + AO353_24430 0.66 -1.3
5,370,623 + AO353_24430 0.66 -0.3
5,370,623 + AO353_24430 0.66 +0.5
5,370,623 + AO353_24430 0.66 +0.2
5,370,624 - AO353_24430 0.66 +2.5
5,370,624 - AO353_24430 0.66 +0.4
5,370,624 - AO353_24430 0.66 -0.2
5,370,627 + AO353_24430 0.66 +1.7
5,370,627 + AO353_24430 0.66 +1.4
5,370,627 + AO353_24430 0.66 -1.9
5,370,627 + AO353_24430 0.66 +1.7
5,370,627 + AO353_24430 0.66 +1.0
5,370,628 - -0.9
5,370,628 - AO353_24430 0.66 +2.0
5,370,647 - AO353_24430 0.68 +0.7
5,370,647 - AO353_24430 0.68 -0.1
5,370,647 - AO353_24430 0.68 -1.6
5,370,665 - AO353_24430 0.69 +0.8
5,370,665 - AO353_24430 0.69 -0.9
5,370,665 - AO353_24430 0.69 +1.1
5,370,669 - AO353_24430 0.70 -0.9
5,370,669 - AO353_24430 0.70 +1.7
5,370,669 - AO353_24430 0.70 +0.2

Or see this region's nucleotide sequence