Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19285 and AO353_19290 are separated by 101 nucleotides AO353_19290 and AO353_19295 are separated by 69 nucleotides AO353_19295 and AO353_19300 are separated by 80 nucleotides AO353_19300 and AO353_19305 are separated by 70 nucleotides
AO353_19285: AO353_19285 - chemotaxis protein CheW, at 4,227,190 to 4,228,125
_19285
AO353_19290: AO353_19290 - molybdenum cofactor sulfurase, at 4,228,227 to 4,229,033
_19290
AO353_19295: AO353_19295 - hypothetical protein, at 4,229,103 to 4,229,387
_19295
AO353_19300: AO353_19300 - exonuclease, at 4,229,468 to 4,230,010
_19300
AO353_19305: AO353_19305 - 3-methylcrotonyl-CoA carboxylase, at 4,230,081 to 4,232,042
_19305
Position (kb)
4229
4230 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4228.150 kb on - strand at 4228.150 kb on - strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.191 kb on + strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.192 kb on - strand at 4228.193 kb on + strand at 4228.194 kb on - strand at 4228.248 kb on + strand at 4228.415 kb on + strand, within AO353_19290 at 4228.415 kb on + strand, within AO353_19290 at 4228.415 kb on + strand, within AO353_19290 at 4228.416 kb on - strand, within AO353_19290 at 4228.518 kb on - strand at 4228.652 kb on + strand, within AO353_19290 at 4228.935 kb on + strand, within AO353_19290 at 4228.936 kb on - strand, within AO353_19290 at 4228.936 kb on - strand, within AO353_19290 at 4229.039 kb on + strand at 4229.039 kb on + strand at 4229.113 kb on + strand at 4229.125 kb on + strand at 4229.125 kb on + strand at 4229.126 kb on - strand at 4229.126 kb on - strand at 4229.126 kb on - strand at 4229.173 kb on - strand, within AO353_19295 at 4229.288 kb on - strand, within AO353_19295 at 4229.288 kb on - strand, within AO353_19295 at 4229.368 kb on + strand at 4229.368 kb on + strand at 4229.369 kb on - strand at 4229.369 kb on - strand at 4229.369 kb on - strand at 4229.381 kb on + strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.382 kb on - strand at 4229.426 kb on - strand at 4229.503 kb on + strand at 4229.503 kb on + strand at 4229.504 kb on - strand at 4229.504 kb on - strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.506 kb on + strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.507 kb on - strand at 4229.543 kb on - strand, within AO353_19300 at 4229.737 kb on + strand, within AO353_19300 at 4229.738 kb on - strand, within AO353_19300 at 4229.738 kb on - strand, within AO353_19300 at 4229.738 kb on - strand, within AO353_19300 at 4229.804 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.817 kb on - strand, within AO353_19300 at 4229.886 kb on + strand, within AO353_19300 at 4229.886 kb on + strand, within AO353_19300 at 4229.886 kb on + strand, within AO353_19300 at 4229.887 kb on - strand, within AO353_19300 at 4229.993 kb on + strand at 4230.051 kb on + strand at 4230.051 kb on + strand at 4230.083 kb on - strand at 4230.083 kb on - strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.249 kb on + strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.250 kb on - strand at 4230.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,228,150 - +1.2 4,228,150 - +1.5 4,228,191 + +1.8 4,228,191 + -0.2 4,228,191 + -0.5 4,228,191 + -0.5 4,228,191 + +2.8 4,228,191 + -1.2 4,228,191 + +0.7 4,228,191 + +0.8 4,228,191 + -0.0 4,228,191 + -1.3 4,228,191 + -0.3 4,228,191 + +1.3 4,228,192 - -0.7 4,228,192 - -0.2 4,228,192 - +0.8 4,228,192 - -0.2 4,228,192 - +2.4 4,228,192 - -0.2 4,228,192 - +0.6 4,228,192 - +2.8 4,228,192 - +2.4 4,228,193 + +0.8 4,228,194 - +1.3 4,228,248 + -0.6 4,228,415 + AO353_19290 0.23 -0.7 4,228,415 + AO353_19290 0.23 -0.2 4,228,415 + AO353_19290 0.23 -0.2 4,228,416 - AO353_19290 0.23 +0.5 4,228,518 - +1.8 4,228,652 + AO353_19290 0.53 +0.6 4,228,935 + AO353_19290 0.88 -0.2 4,228,936 - AO353_19290 0.88 +0.2 4,228,936 - AO353_19290 0.88 +0.8 4,229,039 + +1.8 4,229,039 + -0.7 4,229,113 + +0.3 4,229,125 + -0.2 4,229,125 + +0.1 4,229,126 - -2.2 4,229,126 - -1.2 4,229,126 - +0.1 4,229,173 - AO353_19295 0.25 +0.3 4,229,288 - AO353_19295 0.65 -0.1 4,229,288 - AO353_19295 0.65 -1.7 4,229,368 + -0.6 4,229,368 + -0.7 4,229,369 - +1.3 4,229,369 - -0.0 4,229,369 - +0.0 4,229,381 + +2.4 4,229,382 - -0.2 4,229,382 - -0.5 4,229,382 - +0.6 4,229,382 - -1.5 4,229,382 - +0.8 4,229,426 - -0.2 4,229,503 + +0.3 4,229,503 + +0.3 4,229,504 - +0.3 4,229,504 - -0.7 4,229,506 + -1.0 4,229,506 + +0.5 4,229,506 + +0.4 4,229,506 + -0.4 4,229,506 + +0.3 4,229,506 + -0.7 4,229,506 + +0.8 4,229,507 - -1.5 4,229,507 - +0.4 4,229,507 - +1.8 4,229,507 - +0.8 4,229,507 - -1.3 4,229,507 - +0.8 4,229,543 - AO353_19300 0.14 +0.8 4,229,737 + AO353_19300 0.50 -0.2 4,229,738 - AO353_19300 0.50 -1.5 4,229,738 - AO353_19300 0.50 +0.3 4,229,738 - AO353_19300 0.50 -0.5 4,229,804 - AO353_19300 0.62 -0.3 4,229,817 - AO353_19300 0.64 +0.0 4,229,817 - AO353_19300 0.64 +0.5 4,229,817 - AO353_19300 0.64 -0.3 4,229,817 - AO353_19300 0.64 -0.2 4,229,886 + AO353_19300 0.77 +1.1 4,229,886 + AO353_19300 0.77 -0.9 4,229,886 + AO353_19300 0.77 -1.2 4,229,887 - AO353_19300 0.77 -0.7 4,229,993 + +0.6 4,230,051 + +1.1 4,230,051 + +0.4 4,230,083 - +1.2 4,230,083 - +0.8 4,230,249 + +1.0 4,230,249 + +1.2 4,230,249 + -1.0 4,230,249 + -0.5 4,230,249 + +0.8 4,230,250 - -1.3 4,230,250 - -0.3 4,230,250 - +0.4 4,230,250 - -0.4 4,230,250 - +0.0
Or see this region's nucleotide sequence