Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05890 and AO353_05895 are separated by 1 nucleotides AO353_05895 and AO353_05900 are separated by 16 nucleotides
AO353_05890: AO353_05890 - D-aminoacylase, at 1,308,992 to 1,310,449
_05890
AO353_05895: AO353_05895 - RpiR family transcriptional regulator, at 1,310,451 to 1,311,311
_05895
AO353_05900: AO353_05900 - permease DsdX, at 1,311,328 to 1,312,677
_05900
Position (kb)
1310
1311
1312 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1309.608 kb on + strand, within AO353_05890 at 1309.609 kb on - strand, within AO353_05890 at 1309.609 kb on - strand, within AO353_05890 at 1309.615 kb on - strand, within AO353_05890 at 1309.812 kb on + strand, within AO353_05890 at 1309.812 kb on + strand, within AO353_05890 at 1309.812 kb on + strand, within AO353_05890 at 1309.812 kb on + strand, within AO353_05890 at 1309.812 kb on + strand, within AO353_05890 at 1309.813 kb on - strand, within AO353_05890 at 1309.813 kb on - strand, within AO353_05890 at 1309.813 kb on - strand, within AO353_05890 at 1309.813 kb on - strand, within AO353_05890 at 1309.864 kb on + strand, within AO353_05890 at 1309.864 kb on + strand, within AO353_05890 at 1309.864 kb on + strand, within AO353_05890 at 1309.865 kb on - strand, within AO353_05890 at 1309.865 kb on - strand, within AO353_05890 at 1309.887 kb on + strand, within AO353_05890 at 1310.094 kb on + strand, within AO353_05890 at 1310.113 kb on + strand, within AO353_05890 at 1310.113 kb on + strand, within AO353_05890 at 1310.263 kb on + strand, within AO353_05890 at 1310.263 kb on + strand, within AO353_05890 at 1310.263 kb on + strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.264 kb on - strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.267 kb on + strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.268 kb on - strand, within AO353_05890 at 1310.442 kb on + strand at 1310.443 kb on - strand at 1310.443 kb on - strand at 1310.488 kb on + strand at 1310.614 kb on + strand, within AO353_05895 at 1310.614 kb on + strand, within AO353_05895 at 1310.614 kb on + strand, within AO353_05895 at 1310.615 kb on - strand, within AO353_05895 at 1310.615 kb on - strand, within AO353_05895 at 1310.615 kb on - strand, within AO353_05895 at 1310.713 kb on + strand, within AO353_05895 at 1310.713 kb on + strand, within AO353_05895 at 1310.713 kb on + strand, within AO353_05895 at 1310.889 kb on - strand, within AO353_05895 at 1311.225 kb on + strand, within AO353_05895 at 1311.225 kb on + strand, within AO353_05895 at 1311.225 kb on + strand, within AO353_05895 at 1311.225 kb on + strand, within AO353_05895 at 1311.226 kb on - strand at 1311.226 kb on - strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.338 kb on + strand at 1311.339 kb on - strand at 1311.339 kb on - strand at 1311.339 kb on - strand at 1311.339 kb on - strand at 1311.426 kb on + strand at 1311.426 kb on + strand at 1311.426 kb on + strand at 1311.426 kb on + strand at 1311.426 kb on + strand at 1311.427 kb on - strand at 1311.427 kb on - strand at 1311.427 kb on - strand at 1311.434 kb on + strand at 1311.435 kb on - strand at 1311.481 kb on - strand, within AO353_05900 at 1311.742 kb on - strand, within AO353_05900 at 1311.742 kb on - strand, within AO353_05900 at 1312.080 kb on - strand, within AO353_05900 at 1312.080 kb on - strand, within AO353_05900 at 1312.080 kb on - strand, within AO353_05900 at 1312.080 kb on - strand, within AO353_05900 at 1312.127 kb on + strand, within AO353_05900 at 1312.157 kb on + strand, within AO353_05900 at 1312.157 kb on + strand, within AO353_05900 at 1312.158 kb on - strand, within AO353_05900 at 1312.158 kb on - strand, within AO353_05900 at 1312.262 kb on - strand, within AO353_05900
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,309,608 + AO353_05890 0.42 +0.2 1,309,609 - AO353_05890 0.42 +0.1 1,309,609 - AO353_05890 0.42 +0.9 1,309,615 - AO353_05890 0.43 +1.4 1,309,812 + AO353_05890 0.56 -0.4 1,309,812 + AO353_05890 0.56 -0.1 1,309,812 + AO353_05890 0.56 -0.4 1,309,812 + AO353_05890 0.56 -0.2 1,309,812 + AO353_05890 0.56 +1.2 1,309,813 - AO353_05890 0.56 -1.7 1,309,813 - AO353_05890 0.56 -0.2 1,309,813 - AO353_05890 0.56 +2.0 1,309,813 - AO353_05890 0.56 +0.5 1,309,864 + AO353_05890 0.60 +0.8 1,309,864 + AO353_05890 0.60 +1.4 1,309,864 + AO353_05890 0.60 +1.2 1,309,865 - AO353_05890 0.60 -1.7 1,309,865 - AO353_05890 0.60 -0.4 1,309,887 + AO353_05890 0.61 +0.5 1,310,094 + AO353_05890 0.76 +0.6 1,310,113 + AO353_05890 0.77 -0.4 1,310,113 + AO353_05890 0.77 +0.2 1,310,263 + AO353_05890 0.87 -1.1 1,310,263 + AO353_05890 0.87 -0.2 1,310,263 + AO353_05890 0.87 +0.4 1,310,264 - AO353_05890 0.87 +0.0 1,310,264 - AO353_05890 0.87 -0.4 1,310,264 - AO353_05890 0.87 -0.6 1,310,264 - AO353_05890 0.87 +0.2 1,310,264 - AO353_05890 0.87 +2.8 1,310,264 - AO353_05890 0.87 +1.2 1,310,264 - AO353_05890 0.87 -0.1 1,310,264 - AO353_05890 0.87 +1.6 1,310,267 + AO353_05890 0.87 +0.5 1,310,267 + AO353_05890 0.87 -0.2 1,310,267 + AO353_05890 0.87 -0.1 1,310,267 + AO353_05890 0.87 +0.4 1,310,267 + AO353_05890 0.87 -1.1 1,310,267 + AO353_05890 0.87 +1.0 1,310,267 + AO353_05890 0.87 -0.1 1,310,267 + AO353_05890 0.87 -1.4 1,310,267 + AO353_05890 0.87 -0.0 1,310,267 + AO353_05890 0.87 +0.2 1,310,267 + AO353_05890 0.87 +1.0 1,310,267 + AO353_05890 0.87 +0.2 1,310,267 + AO353_05890 0.87 -1.1 1,310,267 + AO353_05890 0.87 +0.7 1,310,267 + AO353_05890 0.87 -0.2 1,310,267 + AO353_05890 0.87 +0.6 1,310,267 + AO353_05890 0.87 +3.0 1,310,267 + AO353_05890 0.87 -0.2 1,310,267 + AO353_05890 0.87 -1.8 1,310,267 + AO353_05890 0.87 -0.5 1,310,267 + AO353_05890 0.87 +1.5 1,310,268 - AO353_05890 0.88 -0.4 1,310,268 - AO353_05890 0.88 +1.8 1,310,268 - AO353_05890 0.88 -0.2 1,310,268 - AO353_05890 0.88 -1.3 1,310,268 - AO353_05890 0.88 -0.1 1,310,268 - AO353_05890 0.88 -0.8 1,310,268 - AO353_05890 0.88 +1.2 1,310,268 - AO353_05890 0.88 -0.0 1,310,268 - AO353_05890 0.88 +0.1 1,310,268 - AO353_05890 0.88 +0.4 1,310,268 - AO353_05890 0.88 +1.5 1,310,268 - AO353_05890 0.88 +0.4 1,310,268 - AO353_05890 0.88 +1.6 1,310,268 - AO353_05890 0.88 +1.6 1,310,268 - AO353_05890 0.88 +0.4 1,310,268 - AO353_05890 0.88 -1.0 1,310,268 - AO353_05890 0.88 +0.3 1,310,268 - AO353_05890 0.88 +0.8 1,310,268 - AO353_05890 0.88 -1.1 1,310,442 + +0.4 1,310,443 - +0.8 1,310,443 - -1.3 1,310,488 + -1.4 1,310,614 + AO353_05895 0.19 +0.9 1,310,614 + AO353_05895 0.19 -1.0 1,310,614 + AO353_05895 0.19 +1.0 1,310,615 - AO353_05895 0.19 +1.6 1,310,615 - AO353_05895 0.19 +0.8 1,310,615 - AO353_05895 0.19 +1.2 1,310,713 + AO353_05895 0.30 +1.2 1,310,713 + AO353_05895 0.30 +0.1 1,310,713 + AO353_05895 0.30 +1.1 1,310,889 - AO353_05895 0.51 +1.2 1,311,225 + AO353_05895 0.90 +0.1 1,311,225 + AO353_05895 0.90 +0.7 1,311,225 + AO353_05895 0.90 +0.9 1,311,225 + AO353_05895 0.90 -1.1 1,311,226 - -2.1 1,311,226 - +0.2 1,311,338 + +0.5 1,311,338 + +0.5 1,311,338 + -0.8 1,311,338 + -0.4 1,311,338 + -0.0 1,311,338 + +0.5 1,311,338 + -1.0 1,311,338 + -0.7 1,311,338 + -1.9 1,311,338 + +1.5 1,311,338 + +0.9 1,311,338 + -0.0 1,311,339 - -0.4 1,311,339 - +2.8 1,311,339 - +0.9 1,311,339 - +0.0 1,311,426 + +0.2 1,311,426 + -0.2 1,311,426 + -0.3 1,311,426 + -1.1 1,311,426 + +1.2 1,311,427 - -1.5 1,311,427 - -0.5 1,311,427 - +0.0 1,311,434 + +0.8 1,311,435 - -0.1 1,311,481 - AO353_05900 0.11 -1.0 1,311,742 - AO353_05900 0.31 -0.8 1,311,742 - AO353_05900 0.31 -1.1 1,312,080 - AO353_05900 0.56 +0.7 1,312,080 - AO353_05900 0.56 -2.3 1,312,080 - AO353_05900 0.56 -1.5 1,312,080 - AO353_05900 0.56 -1.7 1,312,127 + AO353_05900 0.59 -1.2 1,312,157 + AO353_05900 0.61 -0.0 1,312,157 + AO353_05900 0.61 +0.6 1,312,158 - AO353_05900 0.61 -0.6 1,312,158 - AO353_05900 0.61 +1.2 1,312,262 - AO353_05900 0.69 +0.2
Or see this region's nucleotide sequence