Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_815 and Pf1N1B4_816 are separated by 161 nucleotides Pf1N1B4_816 and Pf1N1B4_817 are separated by 41 nucleotides Pf1N1B4_817 and Pf1N1B4_818 are separated by 161 nucleotides
Pf1N1B4_815 - iron-chelator utilization protein, at 932,869 to 933,666
_815
Pf1N1B4_816 - Integral membrane protein, at 933,828 to 934,433
_816
Pf1N1B4_817 - FIG00955104: hypothetical protein, at 934,475 to 934,705
_817
Pf1N1B4_818 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 934,867 to 936,255
_818
Position (kb) 934
935 Strain fitness (log2 ratio) -2
-1
0
1
2 at 933.535 kb on + strand, within Pf1N1B4_815 at 933.535 kb on + strand, within Pf1N1B4_815 at 933.536 kb on - strand, within Pf1N1B4_815 at 933.584 kb on + strand, within Pf1N1B4_815 at 933.664 kb on + strand at 933.694 kb on - strand at 933.958 kb on + strand, within Pf1N1B4_816 at 934.006 kb on + strand, within Pf1N1B4_816 at 934.007 kb on - strand, within Pf1N1B4_816 at 934.007 kb on - strand, within Pf1N1B4_816 at 934.007 kb on - strand at 934.007 kb on - strand, within Pf1N1B4_816 at 934.018 kb on + strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.055 kb on + strand, within Pf1N1B4_816 at 934.056 kb on - strand, within Pf1N1B4_816 at 934.082 kb on - strand, within Pf1N1B4_816 at 934.177 kb on + strand, within Pf1N1B4_816 at 934.178 kb on - strand, within Pf1N1B4_816 at 934.375 kb on - strand at 934.375 kb on - strand at 934.375 kb on - strand at 934.375 kb on - strand at 934.379 kb on - strand at 934.379 kb on - strand at 934.379 kb on - strand at 934.390 kb on + strand at 934.390 kb on + strand at 934.391 kb on - strand at 934.391 kb on - strand at 934.509 kb on + strand, within Pf1N1B4_817 at 934.510 kb on - strand, within Pf1N1B4_817 at 934.573 kb on + strand, within Pf1N1B4_817 at 934.574 kb on - strand at 934.632 kb on + strand, within Pf1N1B4_817 at 934.632 kb on + strand, within Pf1N1B4_817 at 934.632 kb on + strand, within Pf1N1B4_817 at 934.633 kb on - strand, within Pf1N1B4_817 at 934.808 kb on + strand at 934.808 kb on + strand at 934.808 kb on + strand at 934.809 kb on - strand at 934.814 kb on + strand at 934.855 kb on + strand at 934.855 kb on + strand at 934.855 kb on + strand at 934.871 kb on + strand at 934.986 kb on + strand at 934.987 kb on - strand at 935.097 kb on - strand, within Pf1N1B4_818 at 935.097 kb on - strand, within Pf1N1B4_818 at 935.097 kb on - strand, within Pf1N1B4_818 at 935.103 kb on - strand at 935.103 kb on - strand, within Pf1N1B4_818 at 935.182 kb on - strand, within Pf1N1B4_818 at 935.220 kb on + strand, within Pf1N1B4_818 at 935.220 kb on + strand, within Pf1N1B4_818 at 935.309 kb on + strand, within Pf1N1B4_818 at 935.309 kb on + strand, within Pf1N1B4_818 at 935.310 kb on - strand, within Pf1N1B4_818 at 935.310 kb on - strand, within Pf1N1B4_818 at 935.364 kb on - strand, within Pf1N1B4_818 at 935.429 kb on + strand, within Pf1N1B4_818 at 935.429 kb on + strand at 935.430 kb on - strand, within Pf1N1B4_818 at 935.430 kb on - strand, within Pf1N1B4_818 at 935.430 kb on - strand, within Pf1N1B4_818
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 933,535 + Pf1N1B4_815 0.83 -0.0 933,535 + Pf1N1B4_815 0.83 -0.6 933,536 - Pf1N1B4_815 0.84 -1.3 933,584 + Pf1N1B4_815 0.90 -0.6 933,664 + +0.7 933,694 - -1.3 933,958 + Pf1N1B4_816 0.21 -0.4 934,006 + Pf1N1B4_816 0.29 +1.0 934,007 - Pf1N1B4_816 0.30 +2.3 934,007 - Pf1N1B4_816 0.30 +0.5 934,007 - +1.6 934,007 - Pf1N1B4_816 0.30 +0.5 934,018 + Pf1N1B4_816 0.31 -0.3 934,019 - Pf1N1B4_816 0.32 +1.6 934,019 - Pf1N1B4_816 0.32 +0.8 934,019 - Pf1N1B4_816 0.32 +0.4 934,055 + Pf1N1B4_816 0.37 -0.3 934,056 - Pf1N1B4_816 0.38 -2.3 934,082 - Pf1N1B4_816 0.42 -0.6 934,177 + Pf1N1B4_816 0.58 -0.6 934,178 - Pf1N1B4_816 0.58 -0.0 934,375 - -1.0 934,375 - -0.0 934,375 - -1.2 934,375 - +0.2 934,379 - -0.0 934,379 - +1.0 934,379 - -0.0 934,390 + +1.6 934,390 + +0.8 934,391 - -0.3 934,391 - -0.0 934,509 + Pf1N1B4_817 0.15 -0.7 934,510 - Pf1N1B4_817 0.15 -0.9 934,573 + Pf1N1B4_817 0.42 -1.6 934,574 - -1.0 934,632 + Pf1N1B4_817 0.68 -1.0 934,632 + Pf1N1B4_817 0.68 -0.0 934,632 + Pf1N1B4_817 0.68 -2.6 934,633 - Pf1N1B4_817 0.68 -0.0 934,808 + +1.0 934,808 + +1.0 934,808 + -0.0 934,809 - -0.6 934,814 + -0.6 934,855 + -2.3 934,855 + -2.2 934,855 + -0.6 934,871 + -0.2 934,986 + -2.3 934,987 - -1.0 935,097 - Pf1N1B4_818 0.17 +1.2 935,097 - Pf1N1B4_818 0.17 -0.3 935,097 - Pf1N1B4_818 0.17 -0.7 935,103 - +0.6 935,103 - Pf1N1B4_818 0.17 -2.0 935,182 - Pf1N1B4_818 0.23 -1.0 935,220 + Pf1N1B4_818 0.25 +0.6 935,220 + Pf1N1B4_818 0.25 -1.0 935,309 + Pf1N1B4_818 0.32 -1.3 935,309 + Pf1N1B4_818 0.32 -1.0 935,310 - Pf1N1B4_818 0.32 +1.2 935,310 - Pf1N1B4_818 0.32 -0.6 935,364 - Pf1N1B4_818 0.36 -0.3 935,429 + Pf1N1B4_818 0.40 -1.0 935,429 + +1.0 935,430 - Pf1N1B4_818 0.41 -0.6 935,430 - Pf1N1B4_818 0.41 -1.6 935,430 - Pf1N1B4_818 0.41 -0.3
Or see this region's nucleotide sequence