Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6031

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_6029 and Pf1N1B4_6030 are separated by 33 nucleotidesPf1N1B4_6030 and Pf1N1B4_6031 overlap by 4 nucleotidesPf1N1B4_6031 and Pf1N1B4_6032 are separated by 56 nucleotides Pf1N1B4_6029 - uridine nucleosidase (EC 3.2.2.3) (from data), at 493,499 to 494,527 _6029 Pf1N1B4_6030 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 494,561 to 494,965 _6030 Pf1N1B4_6031 - Ribokinase (EC 2.7.1.15) (from data), at 494,962 to 495,879 _6031 Pf1N1B4_6032 - Ribose operon repressor, at 495,936 to 496,955 _6032 Position (kb) 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 494.118 kb on + strand, within Pf1N1B4_6029at 494.119 kb on - strand, within Pf1N1B4_6029at 494.119 kb on - strand, within Pf1N1B4_6029at 494.209 kb on - strand, within Pf1N1B4_6029at 494.209 kb on - strandat 494.209 kb on - strand, within Pf1N1B4_6029at 494.351 kb on - strand, within Pf1N1B4_6029at 494.517 kb on + strandat 494.518 kb on - strandat 494.518 kb on - strandat 494.563 kb on - strandat 494.563 kb on - strandat 494.563 kb on - strandat 494.571 kb on - strandat 494.571 kb on - strandat 494.599 kb on - strandat 494.792 kb on + strand, within Pf1N1B4_6030at 494.792 kb on + strand, within Pf1N1B4_6030at 494.792 kb on + strand, within Pf1N1B4_6030at 494.792 kb on + strand, within Pf1N1B4_6030at 494.793 kb on - strand, within Pf1N1B4_6030at 494.793 kb on - strand, within Pf1N1B4_6030at 494.806 kb on + strand, within Pf1N1B4_6030at 494.807 kb on - strand, within Pf1N1B4_6030at 494.807 kb on - strand, within Pf1N1B4_6030at 494.974 kb on - strandat 494.983 kb on + strandat 494.983 kb on + strandat 494.983 kb on + strandat 494.984 kb on - strandat 494.984 kb on - strandat 494.984 kb on - strandat 495.493 kb on + strand, within Pf1N1B4_6031at 495.494 kb on - strand, within Pf1N1B4_6031at 495.681 kb on - strand, within Pf1N1B4_6031at 495.857 kb on - strandat 495.857 kb on - strandat 495.857 kb on - strandat 495.860 kb on - strandat 495.879 kb on + strandat 495.879 kb on + strandat 495.879 kb on + strandat 495.879 kb on + strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.880 kb on - strandat 495.927 kb on - strandat 495.927 kb on - strandat 495.992 kb on + strandat 495.993 kb on - strandat 495.993 kb on - strandat 496.179 kb on - strand, within Pf1N1B4_6032at 496.179 kb on - strand, within Pf1N1B4_6032at 496.267 kb on - strand, within Pf1N1B4_6032at 496.471 kb on + strand, within Pf1N1B4_6032at 496.636 kb on + strand, within Pf1N1B4_6032at 496.636 kb on + strand, within Pf1N1B4_6032at 496.688 kb on - strand, within Pf1N1B4_6032at 496.706 kb on - strand, within Pf1N1B4_6032at 496.706 kb on - strand, within Pf1N1B4_6032at 496.822 kb on + strand, within Pf1N1B4_6032at 496.823 kb on - strand, within Pf1N1B4_6032at 496.860 kb on + strandat 496.861 kb on - strandat 496.861 kb on - strandat 496.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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494,118 + Pf1N1B4_6029 0.60 -2.0
494,119 - Pf1N1B4_6029 0.60 +0.8
494,119 - Pf1N1B4_6029 0.60 -0.4
494,209 - Pf1N1B4_6029 0.69 -0.5
494,209 - +0.5
494,209 - Pf1N1B4_6029 0.69 -0.2
494,351 - Pf1N1B4_6029 0.83 +0.8
494,517 + +1.8
494,518 - -1.8
494,518 - -0.2
494,563 - +0.1
494,563 - -1.8
494,563 - +1.0
494,571 - -0.2
494,571 - -1.6
494,599 - +0.4
494,792 + Pf1N1B4_6030 0.57 -1.2
494,792 + Pf1N1B4_6030 0.57 -0.6
494,792 + Pf1N1B4_6030 0.57 -0.6
494,792 + Pf1N1B4_6030 0.57 -0.2
494,793 - Pf1N1B4_6030 0.57 -1.2
494,793 - Pf1N1B4_6030 0.57 +1.1
494,806 + Pf1N1B4_6030 0.60 -0.8
494,807 - Pf1N1B4_6030 0.61 +0.4
494,807 - Pf1N1B4_6030 0.61 -0.2
494,974 - -0.4
494,983 + -0.2
494,983 + -1.2
494,983 + -2.2
494,984 - +2.1
494,984 - -1.5
494,984 - +0.8
495,493 + Pf1N1B4_6031 0.58 -2.5
495,494 - Pf1N1B4_6031 0.58 -0.8
495,681 - Pf1N1B4_6031 0.78 -1.8
495,857 - +0.8
495,857 - -0.9
495,857 - +0.6
495,860 - +0.2
495,879 + -1.2
495,879 + -0.2
495,879 + -0.2
495,879 + -0.2
495,880 - +1.1
495,880 - -0.4
495,880 - +1.1
495,880 - -0.2
495,880 - -0.6
495,880 - -0.5
495,880 - -2.5
495,880 - -0.9
495,880 - -0.8
495,880 - -0.8
495,880 - +0.8
495,880 - +0.1
495,880 - -1.2
495,880 - +1.8
495,880 - -0.6
495,880 - +1.1
495,880 - -0.0
495,880 - -0.8
495,880 - -1.2
495,880 - -0.2
495,927 - -1.2
495,927 - +0.8
495,992 + -1.2
495,993 - -1.2
495,993 - +0.2
496,179 - Pf1N1B4_6032 0.24 -0.2
496,179 - Pf1N1B4_6032 0.24 -2.8
496,267 - Pf1N1B4_6032 0.32 -0.9
496,471 + Pf1N1B4_6032 0.52 +1.8
496,636 + Pf1N1B4_6032 0.69 +0.8
496,636 + Pf1N1B4_6032 0.69 -0.5
496,688 - Pf1N1B4_6032 0.74 -1.2
496,706 - Pf1N1B4_6032 0.75 -2.5
496,706 - Pf1N1B4_6032 0.75 -0.5
496,822 + Pf1N1B4_6032 0.87 -0.2
496,823 - Pf1N1B4_6032 0.87 +1.4
496,860 + -0.7
496,861 - -1.2
496,861 - +0.5
496,861 - +0.7

Or see this region's nucleotide sequence