Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3702

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3701 and Pf1N1B4_3702 are separated by 301 nucleotidesPf1N1B4_3702 and Pf1N1B4_3703 are separated by 165 nucleotidesPf1N1B4_3703 and Pf1N1B4_3704 are separated by 164 nucleotides Pf1N1B4_3701 - Chromosomal replication initiator protein DnaA, at 4,110,152 to 4,110,856 _3701 Pf1N1B4_3702 - NLP/P60 family protein, at 4,111,158 to 4,111,721 _3702 Pf1N1B4_3703 - NLP/P60 family protein, at 4,111,887 to 4,112,423 _3703 Pf1N1B4_3704 - L-sorbosone dehydrogenase, at 4,112,588 to 4,113,901 _3704 Position (kb) 4111 4112Strain fitness (log2 ratio) -2 -1 0 1at 4110.896 kb on - strandat 4110.976 kb on + strandat 4110.977 kb on - strandat 4111.000 kb on + strandat 4111.000 kb on + strandat 4111.000 kb on + strandat 4111.635 kb on + strand, within Pf1N1B4_3702at 4111.719 kb on + strandat 4111.734 kb on + strandat 4111.746 kb on - strandat 4111.753 kb on + strandat 4111.915 kb on + strandat 4111.916 kb on - strandat 4112.280 kb on + strand, within Pf1N1B4_3703at 4112.280 kb on + strand, within Pf1N1B4_3703at 4112.280 kb on + strand, within Pf1N1B4_3703at 4112.280 kb on + strandat 4112.280 kb on + strand, within Pf1N1B4_3703at 4112.280 kb on + strand, within Pf1N1B4_3703at 4112.281 kb on - strand, within Pf1N1B4_3703at 4112.281 kb on - strandat 4112.281 kb on - strand, within Pf1N1B4_3703at 4112.356 kb on - strand, within Pf1N1B4_3703at 4112.356 kb on - strand, within Pf1N1B4_3703at 4112.370 kb on + strandat 4112.414 kb on + strandat 4112.414 kb on + strandat 4112.414 kb on + strandat 4112.522 kb on + strandat 4112.589 kb on + strandat 4112.589 kb on + strandat 4112.590 kb on - strandat 4112.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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4,110,896 - -1.1
4,110,976 + +0.5
4,110,977 - +0.2
4,111,000 + +0.1
4,111,000 + -0.1
4,111,000 + +0.5
4,111,635 + Pf1N1B4_3702 0.85 -0.7
4,111,719 + -0.9
4,111,734 + -1.4
4,111,746 - -1.0
4,111,753 + -0.1
4,111,915 + +0.3
4,111,916 - -2.4
4,112,280 + Pf1N1B4_3703 0.73 -1.4
4,112,280 + Pf1N1B4_3703 0.73 -0.1
4,112,280 + Pf1N1B4_3703 0.73 -0.1
4,112,280 + -0.1
4,112,280 + Pf1N1B4_3703 0.73 -1.7
4,112,280 + Pf1N1B4_3703 0.73 -0.4
4,112,281 - Pf1N1B4_3703 0.73 -1.7
4,112,281 - -0.1
4,112,281 - Pf1N1B4_3703 0.73 -2.4
4,112,356 - Pf1N1B4_3703 0.87 -1.1
4,112,356 - Pf1N1B4_3703 0.87 +0.9
4,112,370 + +0.2
4,112,414 + -0.6
4,112,414 + -1.1
4,112,414 + -0.5
4,112,522 + +0.9
4,112,589 + +0.0
4,112,589 + +0.6
4,112,590 - -1.1
4,112,590 - -0.7

Or see this region's nucleotide sequence