Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3701

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3700 and Pf1N1B4_3701 are separated by 230 nucleotidesPf1N1B4_3701 and Pf1N1B4_3702 are separated by 301 nucleotides Pf1N1B4_3700 - Putative permease often clustered with de novo purine synthesis, at 4,108,848 to 4,109,921 _3700 Pf1N1B4_3701 - Chromosomal replication initiator protein DnaA, at 4,110,152 to 4,110,856 _3701 Pf1N1B4_3702 - NLP/P60 family protein, at 4,111,158 to 4,111,721 _3702 Position (kb) 4110 4111Strain fitness (log2 ratio) -1 0 1 2 3at 4109.505 kb on + strand, within Pf1N1B4_3700at 4109.506 kb on - strand, within Pf1N1B4_3700at 4109.506 kb on - strandat 4109.586 kb on + strand, within Pf1N1B4_3700at 4109.587 kb on - strand, within Pf1N1B4_3700at 4109.587 kb on - strand, within Pf1N1B4_3700at 4109.656 kb on - strand, within Pf1N1B4_3700at 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.875 kb on - strandat 4109.893 kb on - strandat 4109.893 kb on - strandat 4109.893 kb on - strandat 4109.893 kb on - strandat 4109.919 kb on + strandat 4110.896 kb on - strandat 4110.976 kb on + strandat 4110.977 kb on - strandat 4111.000 kb on + strandat 4111.000 kb on + strandat 4111.000 kb on + strandat 4111.635 kb on + strand, within Pf1N1B4_3702at 4111.719 kb on + strandat 4111.734 kb on + strandat 4111.746 kb on - strandat 4111.753 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
4,109,505 + Pf1N1B4_3700 0.61 -1.4
4,109,506 - Pf1N1B4_3700 0.61 -0.7
4,109,506 - -1.1
4,109,586 + Pf1N1B4_3700 0.69 -1.1
4,109,587 - Pf1N1B4_3700 0.69 +2.2
4,109,587 - Pf1N1B4_3700 0.69 -0.1
4,109,656 - Pf1N1B4_3700 0.75 +0.3
4,109,875 - +0.9
4,109,875 - -0.1
4,109,875 - +0.7
4,109,875 - -0.7
4,109,875 - +0.6
4,109,875 - -0.7
4,109,875 - -1.7
4,109,875 - +0.1
4,109,893 - +3.0
4,109,893 - -0.1
4,109,893 - -1.1
4,109,893 - -1.1
4,109,919 + -0.1
4,110,896 - -1.1
4,110,976 + +0.5
4,110,977 - +0.2
4,111,000 + +0.1
4,111,000 + -0.1
4,111,000 + +0.5
4,111,635 + Pf1N1B4_3702 0.85 -0.7
4,111,719 + -0.9
4,111,734 + -1.4
4,111,746 - -1.0
4,111,753 + -0.1

Or see this region's nucleotide sequence