Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2800

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2799 and Pf1N1B4_2800 are separated by 123 nucleotidesPf1N1B4_2800 and Pf1N1B4_2801 are separated by 12 nucleotidesPf1N1B4_2801 and Pf1N1B4_2802 are separated by 184 nucleotides Pf1N1B4_2799 - GTP-binding protein Obg, at 3,141,980 to 3,143,203 _2799 Pf1N1B4_2800 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 3,143,327 to 3,144,445 _2800 Pf1N1B4_2801 - Conserved uncharacterized protein CreA, at 3,144,458 to 3,144,922 _2801 Pf1N1B4_2802 - SSU ribosomal protein S20p, at 3,145,107 to 3,145,385 _2802 Position (kb) 3143 3144 3145Strain fitness (log2 ratio) -2 -1 0 1 2at 3143.189 kb on + strandat 3143.189 kb on + strandat 3143.189 kb on + strandat 3143.189 kb on + strandat 3143.189 kb on + strandat 3143.220 kb on + strandat 3143.220 kb on + strandat 3143.220 kb on + strandat 3143.234 kb on + strandat 3143.247 kb on + strandat 3143.247 kb on + strandat 3143.247 kb on + strandat 3143.247 kb on + strandat 3143.247 kb on + strandat 3143.247 kb on + strandat 3143.247 kb on + strandat 3143.250 kb on + strandat 3143.250 kb on + strandat 3144.451 kb on + strandat 3144.477 kb on + strandat 3144.620 kb on + strand, within Pf1N1B4_2801at 3144.620 kb on + strand, within Pf1N1B4_2801at 3144.620 kb on + strand, within Pf1N1B4_2801at 3144.620 kb on + strand, within Pf1N1B4_2801at 3144.621 kb on - strand, within Pf1N1B4_2801at 3144.648 kb on + strand, within Pf1N1B4_2801at 3144.660 kb on + strand, within Pf1N1B4_2801at 3144.660 kb on + strand, within Pf1N1B4_2801at 3144.661 kb on - strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.691 kb on + strand, within Pf1N1B4_2801at 3144.823 kb on + strand, within Pf1N1B4_2801at 3144.823 kb on + strand, within Pf1N1B4_2801at 3144.824 kb on - strand, within Pf1N1B4_2801at 3144.833 kb on + strand, within Pf1N1B4_2801at 3144.833 kb on + strand, within Pf1N1B4_2801at 3144.833 kb on + strand, within Pf1N1B4_2801at 3144.833 kb on + strand, within Pf1N1B4_2801at 3144.834 kb on - strand, within Pf1N1B4_2801at 3144.834 kb on - strand, within Pf1N1B4_2801at 3144.842 kb on + strand, within Pf1N1B4_2801at 3144.842 kb on + strand, within Pf1N1B4_2801at 3144.842 kb on + strand, within Pf1N1B4_2801at 3144.925 kb on + strandat 3144.925 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.985 kb on + strandat 3144.986 kb on - strandat 3144.986 kb on - strandat 3144.986 kb on - strandat 3145.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,143,189 + +0.7
3,143,189 + -1.2
3,143,189 + -0.9
3,143,189 + -0.5
3,143,189 + -0.5
3,143,220 + -0.5
3,143,220 + -0.9
3,143,220 + -0.5
3,143,234 + +0.1
3,143,247 + -1.5
3,143,247 + +1.7
3,143,247 + -0.2
3,143,247 + +0.4
3,143,247 + +0.6
3,143,247 + +1.1
3,143,247 + +1.7
3,143,250 + -0.5
3,143,250 + -0.4
3,144,451 + -1.5
3,144,477 + -1.9
3,144,620 + Pf1N1B4_2801 0.35 +0.1
3,144,620 + Pf1N1B4_2801 0.35 +1.1
3,144,620 + Pf1N1B4_2801 0.35 -0.5
3,144,620 + Pf1N1B4_2801 0.35 +0.5
3,144,621 - Pf1N1B4_2801 0.35 -0.7
3,144,648 + Pf1N1B4_2801 0.41 +0.7
3,144,660 + Pf1N1B4_2801 0.43 -0.5
3,144,660 + Pf1N1B4_2801 0.43 +1.1
3,144,661 - Pf1N1B4_2801 0.44 +1.7
3,144,691 + Pf1N1B4_2801 0.50 +0.1
3,144,691 + Pf1N1B4_2801 0.50 -1.5
3,144,691 + Pf1N1B4_2801 0.50 -1.0
3,144,691 + Pf1N1B4_2801 0.50 +0.7
3,144,691 + Pf1N1B4_2801 0.50 +0.5
3,144,691 + Pf1N1B4_2801 0.50 +0.1
3,144,691 + Pf1N1B4_2801 0.50 -1.9
3,144,691 + Pf1N1B4_2801 0.50 +0.4
3,144,691 + Pf1N1B4_2801 0.50 -0.5
3,144,691 + Pf1N1B4_2801 0.50 +0.1
3,144,823 + Pf1N1B4_2801 0.78 +0.1
3,144,823 + Pf1N1B4_2801 0.78 -0.5
3,144,824 - Pf1N1B4_2801 0.79 -1.7
3,144,833 + Pf1N1B4_2801 0.81 -0.4
3,144,833 + Pf1N1B4_2801 0.81 -0.2
3,144,833 + Pf1N1B4_2801 0.81 +1.1
3,144,833 + Pf1N1B4_2801 0.81 -0.5
3,144,834 - Pf1N1B4_2801 0.81 +0.4
3,144,834 - Pf1N1B4_2801 0.81 +0.1
3,144,842 + Pf1N1B4_2801 0.83 +2.1
3,144,842 + Pf1N1B4_2801 0.83 +0.8
3,144,842 + Pf1N1B4_2801 0.83 +0.2
3,144,925 + -1.2
3,144,925 + +0.5
3,144,985 + +0.1
3,144,985 + -0.9
3,144,985 + -0.5
3,144,985 + -1.7
3,144,985 + +0.1
3,144,985 + +0.1
3,144,985 + -0.7
3,144,985 + +1.4
3,144,985 + -0.1
3,144,985 + -0.9
3,144,985 + -0.0
3,144,985 + -0.9
3,144,985 + +1.1
3,144,985 + -2.2
3,144,985 + +0.1
3,144,985 + -1.9
3,144,985 + -0.9
3,144,985 + +0.5
3,144,985 + -0.2
3,144,985 + -2.2
3,144,985 + -1.1
3,144,985 + -0.1
3,144,986 - -1.5
3,144,986 - -1.5
3,144,986 - +1.1
3,145,015 - -0.6

Or see this region's nucleotide sequence