Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1799 and Pf1N1B4_1800 are separated by 147 nucleotides Pf1N1B4_1800 and Pf1N1B4_1801 are separated by 163 nucleotides Pf1N1B4_1801 and Pf1N1B4_1802 are separated by 321 nucleotides
Pf1N1B4_1799 - T1SS secreted agglutinin RTX, at 2,054,966 to 2,067,595
_1799
Pf1N1B4_1800 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 2,067,743 to 2,068,081
_1800
Pf1N1B4_1801 - hypothetical protein, at 2,068,245 to 2,068,358
_1801
Pf1N1B4_1802 - Membrane bound c-di-GMP receptor LapD, at 2,068,680 to 2,070,626
_1802
Position (kb)
2067
2068
2069 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2067.056 kb on + strand at 2067.057 kb on - strand at 2067.057 kb on - strand at 2067.057 kb on - strand at 2067.057 kb on - strand at 2067.071 kb on + strand at 2067.072 kb on - strand at 2067.072 kb on - strand at 2067.201 kb on + strand at 2067.201 kb on + strand at 2067.201 kb on + strand at 2067.202 kb on - strand at 2067.202 kb on - strand at 2067.394 kb on + strand at 2067.394 kb on + strand at 2067.394 kb on + strand at 2067.394 kb on + strand at 2067.395 kb on - strand at 2067.395 kb on - strand at 2067.697 kb on + strand at 2067.698 kb on - strand at 2067.698 kb on - strand at 2067.749 kb on + strand at 2067.750 kb on - strand at 2067.750 kb on - strand at 2067.778 kb on - strand, within Pf1N1B4_1800 at 2067.778 kb on - strand, within Pf1N1B4_1800 at 2067.800 kb on + strand, within Pf1N1B4_1800 at 2067.801 kb on - strand, within Pf1N1B4_1800 at 2068.080 kb on - strand at 2068.080 kb on - strand at 2068.236 kb on + strand at 2068.237 kb on - strand at 2068.406 kb on + strand at 2068.407 kb on - strand at 2068.460 kb on + strand at 2068.461 kb on - strand at 2068.522 kb on - strand at 2068.694 kb on + strand at 2068.694 kb on + strand at 2068.726 kb on + strand at 2068.726 kb on + strand at 2068.726 kb on + strand at 2068.726 kb on + strand at 2068.726 kb on + strand at 2068.726 kb on + strand at 2068.726 kb on + strand at 2068.727 kb on - strand at 2068.727 kb on - strand at 2068.727 kb on - strand at 2068.727 kb on - strand at 2068.727 kb on - strand at 2068.727 kb on - strand at 2068.802 kb on + strand at 2068.803 kb on - strand at 2068.870 kb on + strand at 2068.870 kb on + strand at 2068.871 kb on - strand at 2068.871 kb on - strand at 2068.871 kb on - strand at 2068.871 kb on - strand at 2068.871 kb on - strand at 2068.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 2,067,056 + +0.3 2,067,057 - -0.1 2,067,057 - -0.5 2,067,057 - -0.5 2,067,057 - +0.3 2,067,071 + +0.3 2,067,072 - -1.5 2,067,072 - +0.3 2,067,201 + -0.1 2,067,201 + +0.3 2,067,201 + +0.0 2,067,202 - +2.3 2,067,202 - -1.1 2,067,394 + -0.5 2,067,394 + -0.5 2,067,394 + -2.1 2,067,394 + -0.3 2,067,395 - +0.0 2,067,395 - +1.3 2,067,697 + +0.7 2,067,698 - +1.5 2,067,698 - -0.4 2,067,749 + +0.3 2,067,750 - +0.3 2,067,750 - -2.3 2,067,778 - Pf1N1B4_1800 0.10 -0.3 2,067,778 - Pf1N1B4_1800 0.10 +1.3 2,067,800 + Pf1N1B4_1800 0.17 +0.3 2,067,801 - Pf1N1B4_1800 0.17 -0.4 2,068,080 - +0.5 2,068,080 - -0.3 2,068,236 + +0.9 2,068,237 - -1.5 2,068,406 + -0.1 2,068,407 - -0.9 2,068,460 + -0.7 2,068,461 - +0.3 2,068,522 - +2.1 2,068,694 + +0.3 2,068,694 + +0.3 2,068,726 + +0.3 2,068,726 + -2.1 2,068,726 + +0.3 2,068,726 + +0.3 2,068,726 + -0.7 2,068,726 + +0.3 2,068,726 + -1.9 2,068,727 - -0.7 2,068,727 - -0.1 2,068,727 - -0.7 2,068,727 - -1.3 2,068,727 - +0.3 2,068,727 - -0.7 2,068,802 + -0.0 2,068,803 - +0.1 2,068,870 + +0.3 2,068,870 + -1.3 2,068,871 - -1.1 2,068,871 - +1.3 2,068,871 - -1.5 2,068,871 - +1.3 2,068,871 - +2.6 2,068,871 - -0.7
Or see this region's nucleotide sequence