Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1800

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1799 and Pf1N1B4_1800 are separated by 147 nucleotidesPf1N1B4_1800 and Pf1N1B4_1801 are separated by 163 nucleotidesPf1N1B4_1801 and Pf1N1B4_1802 are separated by 321 nucleotides Pf1N1B4_1799 - T1SS secreted agglutinin RTX, at 2,054,966 to 2,067,595 _1799 Pf1N1B4_1800 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 2,067,743 to 2,068,081 _1800 Pf1N1B4_1801 - hypothetical protein, at 2,068,245 to 2,068,358 _1801 Pf1N1B4_1802 - Membrane bound c-di-GMP receptor LapD, at 2,068,680 to 2,070,626 _1802 Position (kb) 2067 2068 2069Strain fitness (log2 ratio) -2 -1 0 1 2at 2067.056 kb on + strandat 2067.057 kb on - strandat 2067.057 kb on - strandat 2067.057 kb on - strandat 2067.057 kb on - strandat 2067.071 kb on + strandat 2067.072 kb on - strandat 2067.072 kb on - strandat 2067.201 kb on + strandat 2067.201 kb on + strandat 2067.201 kb on + strandat 2067.202 kb on - strandat 2067.202 kb on - strandat 2067.394 kb on + strandat 2067.394 kb on + strandat 2067.394 kb on + strandat 2067.394 kb on + strandat 2067.395 kb on - strandat 2067.395 kb on - strandat 2067.697 kb on + strandat 2067.698 kb on - strandat 2067.698 kb on - strandat 2067.749 kb on + strandat 2067.750 kb on - strandat 2067.750 kb on - strandat 2067.778 kb on - strand, within Pf1N1B4_1800at 2067.778 kb on - strand, within Pf1N1B4_1800at 2067.800 kb on + strand, within Pf1N1B4_1800at 2067.801 kb on - strand, within Pf1N1B4_1800at 2068.080 kb on - strandat 2068.080 kb on - strandat 2068.236 kb on + strandat 2068.237 kb on - strandat 2068.406 kb on + strandat 2068.407 kb on - strandat 2068.460 kb on + strandat 2068.461 kb on - strandat 2068.522 kb on - strandat 2068.694 kb on + strandat 2068.694 kb on + strandat 2068.726 kb on + strandat 2068.726 kb on + strandat 2068.726 kb on + strandat 2068.726 kb on + strandat 2068.726 kb on + strandat 2068.726 kb on + strandat 2068.726 kb on + strandat 2068.727 kb on - strandat 2068.727 kb on - strandat 2068.727 kb on - strandat 2068.727 kb on - strandat 2068.727 kb on - strandat 2068.727 kb on - strandat 2068.802 kb on + strandat 2068.803 kb on - strandat 2068.870 kb on + strandat 2068.870 kb on + strandat 2068.871 kb on - strandat 2068.871 kb on - strandat 2068.871 kb on - strandat 2068.871 kb on - strandat 2068.871 kb on - strandat 2068.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,067,056 + +0.3
2,067,057 - -0.1
2,067,057 - -0.5
2,067,057 - -0.5
2,067,057 - +0.3
2,067,071 + +0.3
2,067,072 - -1.5
2,067,072 - +0.3
2,067,201 + -0.1
2,067,201 + +0.3
2,067,201 + +0.0
2,067,202 - +2.3
2,067,202 - -1.1
2,067,394 + -0.5
2,067,394 + -0.5
2,067,394 + -2.1
2,067,394 + -0.3
2,067,395 - +0.0
2,067,395 - +1.3
2,067,697 + +0.7
2,067,698 - +1.5
2,067,698 - -0.4
2,067,749 + +0.3
2,067,750 - +0.3
2,067,750 - -2.3
2,067,778 - Pf1N1B4_1800 0.10 -0.3
2,067,778 - Pf1N1B4_1800 0.10 +1.3
2,067,800 + Pf1N1B4_1800 0.17 +0.3
2,067,801 - Pf1N1B4_1800 0.17 -0.4
2,068,080 - +0.5
2,068,080 - -0.3
2,068,236 + +0.9
2,068,237 - -1.5
2,068,406 + -0.1
2,068,407 - -0.9
2,068,460 + -0.7
2,068,461 - +0.3
2,068,522 - +2.1
2,068,694 + +0.3
2,068,694 + +0.3
2,068,726 + +0.3
2,068,726 + -2.1
2,068,726 + +0.3
2,068,726 + +0.3
2,068,726 + -0.7
2,068,726 + +0.3
2,068,726 + -1.9
2,068,727 - -0.7
2,068,727 - -0.1
2,068,727 - -0.7
2,068,727 - -1.3
2,068,727 - +0.3
2,068,727 - -0.7
2,068,802 + -0.0
2,068,803 - +0.1
2,068,870 + +0.3
2,068,870 + -1.3
2,068,871 - -1.1
2,068,871 - +1.3
2,068,871 - -1.5
2,068,871 - +1.3
2,068,871 - +2.6
2,068,871 - -0.7

Or see this region's nucleotide sequence