Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1762

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1761 and Pf1N1B4_1762 are separated by 50 nucleotidesPf1N1B4_1762 and Pf1N1B4_1763 are separated by 142 nucleotides Pf1N1B4_1761 - Fibronectin type III domain protein, at 2,014,076 to 2,015,176 _1761 Pf1N1B4_1762 - FIG00957387: hypothetical protein, at 2,015,227 to 2,016,078 _1762 Pf1N1B4_1763 - putative membrane protein, at 2,016,221 to 2,017,786 _1763 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -2 -1 0 1 2at 2014.446 kb on + strand, within Pf1N1B4_1761at 2014.446 kb on + strand, within Pf1N1B4_1761at 2014.620 kb on + strand, within Pf1N1B4_1761at 2014.620 kb on + strand, within Pf1N1B4_1761at 2014.620 kb on + strand, within Pf1N1B4_1761at 2014.621 kb on - strand, within Pf1N1B4_1761at 2014.629 kb on + strand, within Pf1N1B4_1761at 2014.629 kb on + strand, within Pf1N1B4_1761at 2014.716 kb on + strand, within Pf1N1B4_1761at 2014.716 kb on + strand, within Pf1N1B4_1761at 2014.716 kb on + strand, within Pf1N1B4_1761at 2014.716 kb on + strand, within Pf1N1B4_1761at 2014.716 kb on + strand, within Pf1N1B4_1761at 2014.716 kb on + strandat 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.717 kb on - strand, within Pf1N1B4_1761at 2014.797 kb on + strand, within Pf1N1B4_1761at 2014.954 kb on + strand, within Pf1N1B4_1761at 2014.954 kb on + strand, within Pf1N1B4_1761at 2014.955 kb on - strand, within Pf1N1B4_1761at 2014.955 kb on - strand, within Pf1N1B4_1761at 2014.955 kb on - strand, within Pf1N1B4_1761at 2014.955 kb on - strand, within Pf1N1B4_1761at 2015.253 kb on + strandat 2015.254 kb on - strandat 2015.310 kb on - strandat 2015.376 kb on + strand, within Pf1N1B4_1762at 2015.376 kb on + strand, within Pf1N1B4_1762at 2015.376 kb on + strand, within Pf1N1B4_1762at 2015.424 kb on - strand, within Pf1N1B4_1762at 2015.558 kb on + strand, within Pf1N1B4_1762at 2015.559 kb on - strand, within Pf1N1B4_1762at 2015.559 kb on - strand, within Pf1N1B4_1762at 2015.559 kb on - strand, within Pf1N1B4_1762at 2015.629 kb on - strand, within Pf1N1B4_1762at 2015.630 kb on + strand, within Pf1N1B4_1762at 2015.630 kb on + strand, within Pf1N1B4_1762at 2015.631 kb on - strand, within Pf1N1B4_1762at 2015.631 kb on - strand, within Pf1N1B4_1762at 2015.631 kb on - strand, within Pf1N1B4_1762at 2015.631 kb on - strand, within Pf1N1B4_1762at 2015.631 kb on - strand, within Pf1N1B4_1762at 2016.045 kb on + strandat 2016.045 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.078 kb on + strandat 2016.079 kb on - strandat 2016.079 kb on - strandat 2016.079 kb on - strandat 2016.079 kb on - strandat 2016.079 kb on - strandat 2016.090 kb on + strandat 2016.090 kb on + strandat 2016.091 kb on - strandat 2016.091 kb on - strandat 2016.101 kb on + strandat 2016.101 kb on + strandat 2016.102 kb on - strandat 2016.102 kb on - strandat 2016.139 kb on - strandat 2016.152 kb on + strandat 2016.177 kb on + strandat 2016.177 kb on + strandat 2016.178 kb on - strandat 2016.178 kb on - strandat 2016.178 kb on - strandat 2016.178 kb on - strandat 2016.204 kb on - strandat 2016.223 kb on - strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.234 kb on + strandat 2016.235 kb on - strandat 2016.235 kb on - strandat 2016.235 kb on - strandat 2016.235 kb on - strandat 2016.235 kb on - strandat 2016.235 kb on - strandat 2016.381 kb on + strand, within Pf1N1B4_1763at 2016.381 kb on + strand, within Pf1N1B4_1763at 2016.381 kb on + strand, within Pf1N1B4_1763at 2016.382 kb on - strand, within Pf1N1B4_1763at 2016.382 kb on - strand, within Pf1N1B4_1763at 2016.415 kb on - strand, within Pf1N1B4_1763at 2016.459 kb on + strand, within Pf1N1B4_1763at 2016.459 kb on + strand, within Pf1N1B4_1763at 2016.460 kb on - strand, within Pf1N1B4_1763at 2016.460 kb on - strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strandat 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.489 kb on + strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.490 kb on - strand, within Pf1N1B4_1763at 2016.492 kb on + strand, within Pf1N1B4_1763at 2016.492 kb on + strand, within Pf1N1B4_1763at 2016.492 kb on + strand, within Pf1N1B4_1763at 2016.492 kb on + strand, within Pf1N1B4_1763at 2016.493 kb on - strand, within Pf1N1B4_1763at 2016.493 kb on - strand, within Pf1N1B4_1763at 2016.493 kb on - strand, within Pf1N1B4_1763at 2016.493 kb on - strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strandat 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.498 kb on + strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strand, within Pf1N1B4_1763at 2016.499 kb on - strandat 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.564 kb on + strand, within Pf1N1B4_1763at 2016.565 kb on - strand, within Pf1N1B4_1763at 2016.565 kb on - strand, within Pf1N1B4_1763at 2016.668 kb on + strand, within Pf1N1B4_1763at 2016.668 kb on + strand, within Pf1N1B4_1763at 2016.685 kb on - strand, within Pf1N1B4_1763at 2016.732 kb on + strand, within Pf1N1B4_1763at 2016.744 kb on + strand, within Pf1N1B4_1763at 2016.745 kb on - strandat 2016.785 kb on + strand, within Pf1N1B4_1763at 2016.786 kb on - strand, within Pf1N1B4_1763at 2016.786 kb on - strand, within Pf1N1B4_1763at 2016.901 kb on + strand, within Pf1N1B4_1763at 2017.062 kb on + strand, within Pf1N1B4_1763at 2017.062 kb on + strand, within Pf1N1B4_1763at 2017.062 kb on + strand, within Pf1N1B4_1763at 2017.063 kb on - strand, within Pf1N1B4_1763at 2017.063 kb on - strand, within Pf1N1B4_1763at 2017.063 kb on - strand, within Pf1N1B4_1763

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,014,446 + Pf1N1B4_1761 0.34 -1.7
2,014,446 + Pf1N1B4_1761 0.34 -1.1
2,014,620 + Pf1N1B4_1761 0.49 -0.6
2,014,620 + Pf1N1B4_1761 0.49 +0.0
2,014,620 + Pf1N1B4_1761 0.49 +0.3
2,014,621 - Pf1N1B4_1761 0.50 -1.0
2,014,629 + Pf1N1B4_1761 0.50 +0.9
2,014,629 + Pf1N1B4_1761 0.50 -0.7
2,014,716 + Pf1N1B4_1761 0.58 -1.3
2,014,716 + Pf1N1B4_1761 0.58 -0.3
2,014,716 + Pf1N1B4_1761 0.58 -1.0
2,014,716 + Pf1N1B4_1761 0.58 -1.3
2,014,716 + Pf1N1B4_1761 0.58 +0.3
2,014,716 + -0.7
2,014,717 - Pf1N1B4_1761 0.58 -0.2
2,014,717 - Pf1N1B4_1761 0.58 -1.7
2,014,717 - Pf1N1B4_1761 0.58 -1.3
2,014,717 - Pf1N1B4_1761 0.58 -0.7
2,014,717 - Pf1N1B4_1761 0.58 -0.1
2,014,717 - Pf1N1B4_1761 0.58 -0.3
2,014,717 - Pf1N1B4_1761 0.58 -1.3
2,014,797 + Pf1N1B4_1761 0.65 -0.3
2,014,954 + Pf1N1B4_1761 0.80 -1.3
2,014,954 + Pf1N1B4_1761 0.80 -0.1
2,014,955 - Pf1N1B4_1761 0.80 -0.1
2,014,955 - Pf1N1B4_1761 0.80 +1.1
2,014,955 - Pf1N1B4_1761 0.80 -0.7
2,014,955 - Pf1N1B4_1761 0.80 +1.3
2,015,253 + -1.7
2,015,254 - -1.3
2,015,310 - -0.7
2,015,376 + Pf1N1B4_1762 0.17 -1.0
2,015,376 + Pf1N1B4_1762 0.17 +0.3
2,015,376 + Pf1N1B4_1762 0.17 -1.3
2,015,424 - Pf1N1B4_1762 0.23 +0.3
2,015,558 + Pf1N1B4_1762 0.39 -0.5
2,015,559 - Pf1N1B4_1762 0.39 -1.0
2,015,559 - Pf1N1B4_1762 0.39 -0.7
2,015,559 - Pf1N1B4_1762 0.39 -0.7
2,015,629 - Pf1N1B4_1762 0.47 +0.3
2,015,630 + Pf1N1B4_1762 0.47 -0.7
2,015,630 + Pf1N1B4_1762 0.47 -0.3
2,015,631 - Pf1N1B4_1762 0.47 +1.6
2,015,631 - Pf1N1B4_1762 0.47 +0.3
2,015,631 - Pf1N1B4_1762 0.47 -1.0
2,015,631 - Pf1N1B4_1762 0.47 -2.1
2,015,631 - Pf1N1B4_1762 0.47 -0.7
2,016,045 + -1.3
2,016,045 + +0.9
2,016,078 + -0.2
2,016,078 + -0.3
2,016,078 + +1.0
2,016,078 + -0.6
2,016,078 + -1.3
2,016,078 + -0.7
2,016,078 + -1.6
2,016,078 + -1.6
2,016,078 + -0.3
2,016,078 + +1.3
2,016,079 - +0.3
2,016,079 - -1.3
2,016,079 - +0.3
2,016,079 - -1.3
2,016,079 - -0.7
2,016,090 + -0.5
2,016,090 + +0.6
2,016,091 - -1.3
2,016,091 - -0.7
2,016,101 + -1.0
2,016,101 + -0.4
2,016,102 - +1.3
2,016,102 - +0.3
2,016,139 - -1.3
2,016,152 + +1.3
2,016,177 + +0.3
2,016,177 + -0.1
2,016,178 - -0.3
2,016,178 - +0.7
2,016,178 - -1.2
2,016,178 - -1.1
2,016,204 - -2.3
2,016,223 - -2.1
2,016,234 + +1.3
2,016,234 + -1.7
2,016,234 + +0.3
2,016,234 + +0.3
2,016,234 + -0.2
2,016,234 + +0.3
2,016,234 + -0.3
2,016,234 + -0.7
2,016,234 + +0.3
2,016,234 + +0.3
2,016,234 + -0.6
2,016,234 + -0.7
2,016,234 + -1.3
2,016,234 + -1.1
2,016,235 - -0.3
2,016,235 - -0.7
2,016,235 - -0.1
2,016,235 - +2.6
2,016,235 - +0.3
2,016,235 - +1.3
2,016,381 + Pf1N1B4_1763 0.10 -0.7
2,016,381 + Pf1N1B4_1763 0.10 +0.3
2,016,381 + Pf1N1B4_1763 0.10 +0.1
2,016,382 - Pf1N1B4_1763 0.10 +0.1
2,016,382 - Pf1N1B4_1763 0.10 -0.6
2,016,415 - Pf1N1B4_1763 0.12 -1.7
2,016,459 + Pf1N1B4_1763 0.15 -0.2
2,016,459 + Pf1N1B4_1763 0.15 -0.1
2,016,460 - Pf1N1B4_1763 0.15 -1.1
2,016,460 - Pf1N1B4_1763 0.15 +0.3
2,016,489 + Pf1N1B4_1763 0.17 +1.3
2,016,489 + Pf1N1B4_1763 0.17 -0.1
2,016,489 + Pf1N1B4_1763 0.17 -0.7
2,016,489 + Pf1N1B4_1763 0.17 -0.7
2,016,489 + +1.3
2,016,489 + Pf1N1B4_1763 0.17 -0.3
2,016,489 + Pf1N1B4_1763 0.17 +0.3
2,016,489 + Pf1N1B4_1763 0.17 +0.9
2,016,489 + Pf1N1B4_1763 0.17 +1.9
2,016,489 + Pf1N1B4_1763 0.17 +0.3
2,016,490 - Pf1N1B4_1763 0.17 -0.3
2,016,490 - Pf1N1B4_1763 0.17 -0.1
2,016,490 - Pf1N1B4_1763 0.17 +0.3
2,016,490 - Pf1N1B4_1763 0.17 +0.9
2,016,490 - Pf1N1B4_1763 0.17 +0.3
2,016,490 - Pf1N1B4_1763 0.17 +0.9
2,016,490 - Pf1N1B4_1763 0.17 +1.3
2,016,490 - Pf1N1B4_1763 0.17 -1.7
2,016,492 + Pf1N1B4_1763 0.17 +1.6
2,016,492 + Pf1N1B4_1763 0.17 -1.1
2,016,492 + Pf1N1B4_1763 0.17 -1.7
2,016,492 + Pf1N1B4_1763 0.17 +0.7
2,016,493 - Pf1N1B4_1763 0.17 -0.5
2,016,493 - Pf1N1B4_1763 0.17 -0.3
2,016,493 - Pf1N1B4_1763 0.17 -0.7
2,016,493 - Pf1N1B4_1763 0.17 -0.1
2,016,498 + Pf1N1B4_1763 0.18 -1.7
2,016,498 + Pf1N1B4_1763 0.18 -1.0
2,016,498 + Pf1N1B4_1763 0.18 -1.1
2,016,498 + Pf1N1B4_1763 0.18 +0.3
2,016,498 + Pf1N1B4_1763 0.18 -1.3
2,016,498 + Pf1N1B4_1763 0.18 +0.1
2,016,498 + Pf1N1B4_1763 0.18 -0.7
2,016,498 + Pf1N1B4_1763 0.18 -0.7
2,016,498 + +0.3
2,016,498 + Pf1N1B4_1763 0.18 -1.1
2,016,498 + Pf1N1B4_1763 0.18 +0.3
2,016,498 + Pf1N1B4_1763 0.18 -1.3
2,016,498 + Pf1N1B4_1763 0.18 -0.1
2,016,499 - Pf1N1B4_1763 0.18 -0.1
2,016,499 - Pf1N1B4_1763 0.18 -0.7
2,016,499 - Pf1N1B4_1763 0.18 -1.7
2,016,499 - Pf1N1B4_1763 0.18 -1.9
2,016,499 - Pf1N1B4_1763 0.18 -1.7
2,016,499 - Pf1N1B4_1763 0.18 +1.5
2,016,499 - Pf1N1B4_1763 0.18 -1.0
2,016,499 - Pf1N1B4_1763 0.18 -1.3
2,016,499 - Pf1N1B4_1763 0.18 +0.9
2,016,499 - Pf1N1B4_1763 0.18 +0.3
2,016,499 - -0.3
2,016,564 + Pf1N1B4_1763 0.22 +0.7
2,016,564 + Pf1N1B4_1763 0.22 -0.2
2,016,564 + Pf1N1B4_1763 0.22 -1.5
2,016,564 + Pf1N1B4_1763 0.22 -0.1
2,016,564 + Pf1N1B4_1763 0.22 -2.1
2,016,564 + Pf1N1B4_1763 0.22 +0.1
2,016,564 + Pf1N1B4_1763 0.22 -1.0
2,016,564 + Pf1N1B4_1763 0.22 +0.7
2,016,565 - Pf1N1B4_1763 0.22 +0.3
2,016,565 - Pf1N1B4_1763 0.22 -0.1
2,016,668 + Pf1N1B4_1763 0.29 -1.3
2,016,668 + Pf1N1B4_1763 0.29 +0.3
2,016,685 - Pf1N1B4_1763 0.30 -0.3
2,016,732 + Pf1N1B4_1763 0.33 -1.7
2,016,744 + Pf1N1B4_1763 0.33 -0.8
2,016,745 - +0.3
2,016,785 + Pf1N1B4_1763 0.36 +0.9
2,016,786 - Pf1N1B4_1763 0.36 +0.7
2,016,786 - Pf1N1B4_1763 0.36 +2.4
2,016,901 + Pf1N1B4_1763 0.43 -1.7
2,017,062 + Pf1N1B4_1763 0.54 -0.4
2,017,062 + Pf1N1B4_1763 0.54 -1.1
2,017,062 + Pf1N1B4_1763 0.54 -0.1
2,017,063 - Pf1N1B4_1763 0.54 +0.7
2,017,063 - Pf1N1B4_1763 0.54 -1.9
2,017,063 - Pf1N1B4_1763 0.54 +0.9

Or see this region's nucleotide sequence