Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_10

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_9 and Pf1N1B4_10 are separated by 208 nucleotidesPf1N1B4_10 and Pf1N1B4_11 are separated by 280 nucleotides Pf1N1B4_9 - Probable type IV pilus assembly FimV-related transmembrane protein, at 7,960 to 10,593 _9 Pf1N1B4_10 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 10,802 to 11,812 _10 Pf1N1B4_11 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 12,093 to 13,205 _11 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.104 kb on - strand, within Pf1N1B4_9at 10.738 kb on + strandat 10.796 kb on + strandat 10.804 kb on - strandat 10.804 kb on - strandat 10.804 kb on - strandat 10.818 kb on - strandat 10.865 kb on + strandat 10.891 kb on + strandat 10.891 kb on + strandat 10.891 kb on + strandat 10.892 kb on - strandat 10.892 kb on - strandat 10.892 kb on - strandat 10.892 kb on - strandat 10.892 kb on - strandat 10.936 kb on - strand, within Pf1N1B4_10at 11.107 kb on + strand, within Pf1N1B4_10at 11.108 kb on - strand, within Pf1N1B4_10at 11.108 kb on - strand, within Pf1N1B4_10at 11.185 kb on + strand, within Pf1N1B4_10at 11.186 kb on - strand, within Pf1N1B4_10at 11.794 kb on + strandat 11.818 kb on + strandat 11.818 kb on + strandat 11.819 kb on - strandat 11.819 kb on - strandat 11.901 kb on - strandat 11.952 kb on + strandat 11.953 kb on - strandat 12.006 kb on + strandat 12.081 kb on + strandat 12.081 kb on + strandat 12.081 kb on + strandat 12.082 kb on - strandat 12.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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10,104 - Pf1N1B4_9 0.81 -2.2
10,738 + -0.2
10,796 + -0.6
10,804 - +0.8
10,804 - +0.1
10,804 - +2.1
10,818 - +0.8
10,865 + +1.4
10,891 + -0.2
10,891 + -1.3
10,891 + -0.2
10,892 - -0.2
10,892 - +0.4
10,892 - +1.4
10,892 - +0.1
10,892 - -0.7
10,936 - Pf1N1B4_10 0.13 -0.4
11,107 + Pf1N1B4_10 0.30 -1.4
11,108 - Pf1N1B4_10 0.30 -0.8
11,108 - Pf1N1B4_10 0.30 -1.2
11,185 + Pf1N1B4_10 0.38 -1.8
11,186 - Pf1N1B4_10 0.38 -1.8
11,794 + -0.2
11,818 + -0.2
11,818 + -0.2
11,819 - -0.2
11,819 - -0.8
11,901 - +0.6
11,952 + -1.8
11,953 - +0.2
12,006 + +2.6
12,081 + +0.3
12,081 + -0.4
12,081 + -1.2
12,082 - -0.7
12,082 - -0.2

Or see this region's nucleotide sequence