Experiment: Formate deepwell acetate and vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04755 and MMP_RS04760 are separated by 63 nucleotides MMP_RS04760 and MMP_RS04765 are separated by 45 nucleotides MMP_RS04765 and MMP_RS04770 are separated by 97 nucleotides MMP_RS04770 and MMP_RS04775 are separated by 31 nucleotides
MMP_RS04755: MMP_RS04755 - PRC-barrel domain-containing protein, at 905,585 to 905,833
_RS04755
MMP_RS04760: MMP_RS04760 - diaminopimelate epimerase, at 905,897 to 906,730
_RS04760
MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317
_RS04765
MMP_RS04770: MMP_RS04770 - dihydroorotate dehydrogenase electron transfer subunit, at 908,415 to 909,182
_RS04770
MMP_RS04775: MMP_RS04775 - adenosylhomocysteinase, at 909,214 to 910,461
_RS04775
Position (kb) 906
907
908
909 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 905.786 kb on + strand at 905.800 kb on - strand at 905.831 kb on - strand at 905.874 kb on + strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.884 kb on - strand at 905.884 kb on - strand at 905.885 kb on + strand at 905.923 kb on + strand at 905.933 kb on - strand at 905.935 kb on - strand at 905.939 kb on - strand at 905.939 kb on - strand at 905.940 kb on + strand at 905.944 kb on + strand at 906.199 kb on + strand at 906.348 kb on + strand at 906.387 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.393 kb on + strand at 906.405 kb on - strand at 906.430 kb on + strand at 906.680 kb on - strand at 906.680 kb on - strand at 906.681 kb on + strand at 906.742 kb on + strand at 906.758 kb on - strand at 906.798 kb on + strand at 906.820 kb on - strand at 906.821 kb on + strand at 906.861 kb on - strand at 906.862 kb on + strand at 906.922 kb on + strand at 907.090 kb on - strand at 907.221 kb on + strand at 907.322 kb on - strand at 907.330 kb on + strand at 907.404 kb on - strand at 907.506 kb on - strand at 907.507 kb on + strand at 907.507 kb on + strand at 907.545 kb on + strand at 907.587 kb on + strand at 907.675 kb on - strand at 907.676 kb on + strand at 907.706 kb on + strand at 907.813 kb on + strand at 907.855 kb on - strand at 907.901 kb on - strand at 907.913 kb on - strand at 907.913 kb on - strand at 907.930 kb on - strand at 907.930 kb on - strand at 907.931 kb on + strand at 908.039 kb on + strand at 908.051 kb on + strand at 908.160 kb on - strand at 908.161 kb on + strand at 908.231 kb on - strand at 908.231 kb on - strand at 908.232 kb on + strand at 908.294 kb on - strand at 908.322 kb on + strand at 908.362 kb on - strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.381 kb on - strand at 908.381 kb on - strand at 908.382 kb on + strand at 908.418 kb on - strand at 908.418 kb on - strand at 908.463 kb on - strand at 908.570 kb on + strand at 908.654 kb on - strand at 908.658 kb on - strand at 908.659 kb on + strand at 908.864 kb on - strand at 909.183 kb on + strand at 909.185 kb on - strand at 909.243 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE remove 905,786 + -0.5 905,800 - -2.8 905,831 - +0.7 905,874 + +0.4 905,882 - -1.8 905,882 - -1.2 905,882 - -1.0 905,882 - -0.8 905,882 - -0.8 905,882 - -2.4 905,882 - -2.8 905,882 - -0.7 905,883 + -0.2 905,883 + -0.6 905,883 + -0.3 905,883 + -0.0 905,883 + -0.8 905,883 + -0.7 905,884 - -3.5 905,884 - -2.7 905,885 + -0.1 905,923 + -1.5 905,933 - -1.5 905,935 - -2.1 905,939 - -2.7 905,939 - -2.1 905,940 + -3.4 905,944 + +0.4 906,199 + -1.8 906,348 + -1.2 906,387 - -1.9 906,392 - -1.4 906,392 - -1.0 906,392 - -1.0 906,392 - -2.0 906,392 - -2.3 906,393 + -2.7 906,405 - -2.5 906,430 + -1.8 906,680 - -1.6 906,680 - -2.3 906,681 + -1.5 906,742 + -0.4 906,758 - +0.0 906,798 + +0.4 906,820 - -2.2 906,821 + -1.8 906,861 - -2.9 906,862 + -1.9 906,922 + -2.7 907,090 - -3.9 907,221 + -0.9 907,322 - -2.9 907,330 + -3.1 907,404 - -4.9 907,506 - -3.1 907,507 + -2.3 907,507 + -1.2 907,545 + -4.3 907,587 + -2.8 907,675 - -4.2 907,676 + -3.1 907,706 + -3.0 907,813 + -4.6 907,855 - -3.2 907,901 - -2.1 907,913 - -4.1 907,913 - -2.5 907,930 - -1.6 907,930 - -3.9 907,931 + -4.3 908,039 + -3.2 908,051 + -4.9 908,160 - -5.1 908,161 + -4.2 908,231 - -4.7 908,231 - -4.5 908,232 + -2.1 908,294 - -4.2 908,322 + -3.4 908,362 - -4.2 908,376 + -2.6 908,376 + -3.6 908,376 + -3.7 908,376 + -3.7 908,377 - -2.3 908,377 - -2.2 908,377 - -2.2 908,378 + -3.0 908,378 + -3.8 908,378 + -2.5 908,378 + -1.7 908,378 + -2.7 908,381 - +0.1 908,381 - -0.7 908,382 + -1.8 908,418 - +0.0 908,418 - +0.2 908,463 - -2.2 908,570 + -3.5 908,654 - -3.5 908,658 - -4.2 908,659 + -4.6 908,864 - -3.4 909,183 + -2.7 909,185 - -4.5 909,243 + -1.7
Or see this region's nucleotide sequence