Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19175 and BWI76_RS19180 are separated by 234 nucleotides BWI76_RS19180 and BWI76_RS19185 overlap by 20 nucleotides
BWI76_RS19175: BWI76_RS19175 - dicarboxylate/amino acid:cation symporter, at 3,990,445 to 3,991,719
_RS19175
BWI76_RS19180: BWI76_RS19180 - diguanylate cyclase, at 3,991,954 to 3,993,468
_RS19180
BWI76_RS19185: BWI76_RS19185 - ABC transporter ATP-binding protein, at 3,993,449 to 3,994,483
_RS19185
Position (kb)
3991
3992
3993
3994 Strain fitness (log2 ratio)
-1
0
1
2 at 3990.978 kb on + strand, within BWI76_RS19175 at 3990.986 kb on - strand, within BWI76_RS19175 at 3991.052 kb on + strand, within BWI76_RS19175 at 3991.254 kb on - strand, within BWI76_RS19175 at 3991.401 kb on + strand, within BWI76_RS19175 at 3991.409 kb on - strand, within BWI76_RS19175 at 3991.420 kb on - strand, within BWI76_RS19175 at 3991.542 kb on - strand, within BWI76_RS19175 at 3991.542 kb on - strand, within BWI76_RS19175 at 3991.642 kb on - strand at 3991.642 kb on - strand at 3991.664 kb on + strand at 3991.668 kb on - strand at 3991.674 kb on - strand at 3991.685 kb on + strand at 3992.030 kb on + strand at 3992.045 kb on + strand at 3992.069 kb on + strand at 3992.099 kb on + strand at 3992.099 kb on + strand at 3992.107 kb on - strand, within BWI76_RS19180 at 3992.107 kb on - strand, within BWI76_RS19180 at 3992.164 kb on - strand, within BWI76_RS19180 at 3992.263 kb on - strand, within BWI76_RS19180 at 3992.263 kb on - strand, within BWI76_RS19180 at 3992.348 kb on + strand, within BWI76_RS19180 at 3992.414 kb on + strand, within BWI76_RS19180 at 3992.459 kb on + strand, within BWI76_RS19180 at 3992.599 kb on + strand, within BWI76_RS19180 at 3992.624 kb on - strand, within BWI76_RS19180 at 3992.758 kb on - strand, within BWI76_RS19180 at 3993.039 kb on + strand, within BWI76_RS19180 at 3993.240 kb on - strand, within BWI76_RS19180 at 3993.296 kb on - strand, within BWI76_RS19180 at 3993.597 kb on + strand, within BWI76_RS19185 at 3993.731 kb on - strand, within BWI76_RS19185 at 3993.743 kb on + strand, within BWI76_RS19185 at 3993.890 kb on + strand, within BWI76_RS19185 at 3993.915 kb on - strand, within BWI76_RS19185 at 3994.031 kb on + strand, within BWI76_RS19185 at 3994.236 kb on + strand, within BWI76_RS19185 at 3994.294 kb on + strand, within BWI76_RS19185 at 3994.373 kb on + strand, within BWI76_RS19185 at 3994.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 3,990,978 + BWI76_RS19175 0.42 +0.7 3,990,986 - BWI76_RS19175 0.42 -0.3 3,991,052 + BWI76_RS19175 0.48 +0.6 3,991,254 - BWI76_RS19175 0.63 -0.5 3,991,401 + BWI76_RS19175 0.75 +2.0 3,991,409 - BWI76_RS19175 0.76 +1.0 3,991,420 - BWI76_RS19175 0.76 -0.3 3,991,542 - BWI76_RS19175 0.86 +0.3 3,991,542 - BWI76_RS19175 0.86 -0.1 3,991,642 - -0.5 3,991,642 - -0.0 3,991,664 + -0.2 3,991,668 - +0.2 3,991,674 - +1.5 3,991,685 + -0.1 3,992,030 + +1.0 3,992,045 + +0.8 3,992,069 + -0.5 3,992,099 + +1.9 3,992,099 + -0.1 3,992,107 - BWI76_RS19180 0.10 +1.2 3,992,107 - BWI76_RS19180 0.10 +1.8 3,992,164 - BWI76_RS19180 0.14 +0.2 3,992,263 - BWI76_RS19180 0.20 +0.4 3,992,263 - BWI76_RS19180 0.20 +0.3 3,992,348 + BWI76_RS19180 0.26 +0.3 3,992,414 + BWI76_RS19180 0.30 +0.1 3,992,459 + BWI76_RS19180 0.33 -1.4 3,992,599 + BWI76_RS19180 0.43 +0.6 3,992,624 - BWI76_RS19180 0.44 +0.3 3,992,758 - BWI76_RS19180 0.53 +0.2 3,993,039 + BWI76_RS19180 0.72 -0.0 3,993,240 - BWI76_RS19180 0.85 +0.2 3,993,296 - BWI76_RS19180 0.89 +1.1 3,993,597 + BWI76_RS19185 0.14 +1.8 3,993,731 - BWI76_RS19185 0.27 -0.5 3,993,743 + BWI76_RS19185 0.28 -0.1 3,993,890 + BWI76_RS19185 0.43 -0.1 3,993,915 - BWI76_RS19185 0.45 +0.1 3,994,031 + BWI76_RS19185 0.56 +0.6 3,994,236 + BWI76_RS19185 0.76 +0.3 3,994,294 + BWI76_RS19185 0.82 -0.5 3,994,373 + BWI76_RS19185 0.89 -0.0 3,994,438 + +1.3
Or see this region's nucleotide sequence